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All interfaces > All interologs > Interface groups > group135 > 2YKG_A_C,D

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

2YKG_A
2YKG_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:298 [ASN] D:18 [C] 3.24 C:3 [G] 81.47
A:298 [ASN] D:19 [G] 3.27 C:2 [C] 81.47
A:299 [GLN] D:18 [C] 3.63 C:3 [G] 76.35
A:299 [GLN] D:19 [G] 3.6 C:2 [C] 76.35
A:300 [ILE] D:18 [C] 4.57 C:3 [G] 78.26
A:300 [ILE] D:19 [G] 2.75 C:2 [C] 78.26
A:300 [ILE] D:20 [C] 3.81 C:1 [G] 78.26
A:301 [PRO] D:19 [G] 4.14 C:2 [C] 71.21
A:325 [SER] D:20 [C] 3.61 C:1 [G] 82.4
A:326 [GLY] D:19 [G] 4.99 C:2 [C] 90.8
A:326 [GLY] D:20 [C] 2.77 C:1 [G] 90.8
A:347 [THR] D:19 [G] 3.97 C:2 [C] 98.76
A:347 [THR] D:20 [C] 2.77 C:1 [G] 98.76
A:349 [GLN] C:3 [G] 4.73 D:18 [C] 93.8
A:349 [GLN] D:19 [G] 3.66 C:2 [C] 93.8
A:349 [GLN] D:20 [C] 3.83 C:1 [G] 93.8
A:350 [ILE] D:20 [C] 3.72 C:1 [G] 88.96
A:353 [ASN] D:20 [C] 3.36 C:1 [G] 94.1
A:376 [ASN] C:5 [G] 4.33 D:16 [C] 92.85
A:378 [SER] C:5 [G] 4.84 D:16 [C] 45.2
A:379 [LYS] C:5 [G] 3.19 D:16 [C] 74.83
A:379 [LYS] C:6 [C] 2.89 D:15 [G] 74.83
A:380 [GLN] C:4 [C] 3.44 D:17 [G] 57.04
A:380 [GLN] C:5 [G] 2.93 D:16 [C] 57.04
A:381 [HIS] C:4 [C] 3.44 D:17 [G] 79.34
A:381 [HIS] C:5 [G] 4.13 D:16 [C] 79.34
A:382 [PRO] C:4 [C] 3.71 D:17 [G] 83.61
A:498 [GLN] D:13 [G] 4.82 C:8 [C] 36.14
A:498 [GLN] D:14 [C] 3.08 C:7 [G] 36.14
A:499 [ILE] D:14 [C] 3.3 C:7 [G] 52.09
A:499 [ILE] D:15 [G] 3.67 C:6 [C] 52.09
A:500 [GLN] D:14 [C] 4.95 C:7 [G] 4.72
A:508 [LYS] D:14 [C] 4.4 C:7 [G] 24.06
A:511 [GLN] D:15 [G] 3.27 C:6 [C] sugar:SC 83.3
A:511 [GLN] D:16 [C] 4.23 C:5 [G] 83.3
A:515 [THR] D:15 [G] 4.0 C:6 [C] 24.09
A:750 [LYS] C:8 [C] 3.3 D:13 [G] 82.0
A:829 [CYS] C:1 [G] 4.59 D:20 [C] 57.73
A:829 [CYS] C:2 [C] 3.35 D:19 [G] 57.73
A:830 [HIS] C:1 [G] 2.92 D:20 [C] sugar:SC 86.88
A:830 [HIS] C:2 [C] 3.36 D:19 [G] 86.88
A:831 [TYR] C:1 [G] 4.88 D:20 [C] 87.09
A:853 [PHE] C:1 [G] 3.27 D:20 [C] base/AA stacks 2.02
A:853 [PHE] D:20 [C] 3.35 C:1 [G] base/AA stacks 2.02
A:854 [SER] D:20 [C] 2.43 C:1 [G] sugar:SC 46.45
A:856 [PHE] C:1 [G] 3.59 D:20 [C] 37.5
A:858 [LYS] C:1 [G] 4.61 D:20 [C] 46.34
A:874 [GLY] C:1 [G] 3.58 D:20 [C] 95.2
A:875 [ILE] C:1 [G] 3.3 D:20 [C] 69.17
A:886 [VAL] C:1 [G] 3.34 D:20 [C] 68.43
A:887 [ILE] C:1 [G] 3.82 D:20 [C] 72.63
A:887 [ILE] C:2 [C] 4.39 D:19 [G] 72.63
A:888 [LYS] C:1 [G] 3.87 D:20 [C] 79.08
A:888 [LYS] C:2 [C] 3.69 D:19 [G] 79.08
A:889 [ILE] C:2 [C] 4.22 D:19 [G] 87.03
A:890 [GLU] D:14 [C] 4.84 C:7 [G] 44.76
A:906 [SER] D:13 [G] 3.15 C:8 [C] 67.48
A:907 [LYS] C:3 [G] 4.5 D:18 [C] 82.89
A:907 [LYS] C:4 [C] 4.71 D:17 [G] 82.89
A:908 [TRP] C:1 [G] 4.71 D:20 [C] 94.13
A:908 [TRP] C:2 [C] 3.3 D:19 [G] 94.13
A:909 [LYS] C:3 [G] 3.83 D:18 [C] 72.14
A:910 [ASP] D:12 [C] 4.91 C:9 [G] 64.76

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 2YKG_A_C,D A: Probable atp-dependent RNA helicase ddx58, Homo sapiens (natural) C: Homo sapiens (natural) D: Homo sapiens (natural) O95786 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2YKG_A_C,D 3OG8_A_C,D 0.81 0.82 0.73 0.3 Mss4-like compare
2YKG_A_C,D 5JB2_A_X,Y 0.60 0.72 2.5 0.33 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
2YKG_A_C,D 5JAJ_A_X,Y 0.60 0.71 2.58 0.33 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
2YKG_A_C,D 3ZD7_A_C,D 0.82 0.91 2.9 0.73 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
2YKG_A_C,D 5JBG_A_X 0.54 0.71 3.07 0.31 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare