RNAprotDB

All interfaces > All interologs > Interface groups > group135 > 3I5X_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

3I5X_A
3I5X_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:188 [PRO] B:5 [U] 2.72 sugar:BB 92.08
A:188 [PRO] B:6 [U] 3.26 92.08
A:189 [THR] B:5 [U] 3.71 94.38
A:189 [THR] B:6 [U] 3.56 94.38
A:190 [ARG] B:5 [U] 4.81 87.91
A:190 [ARG] B:6 [U] 2.9 87.91
A:190 [ARG] B:7 [U] 2.76 87.91
A:190 [ARG] B:8 [U] 3.65 87.91
A:191 [ASP] B:6 [U] 4.63 90.73
A:219 [VAL] B:7 [U] 4.13 75.12
A:220 [GLY] B:7 [U] 3.17 84.05
A:220 [GLY] B:8 [U] 3.87 84.05
A:221 [GLY] B:7 [U] 4.31 81.44
A:221 [GLY] B:8 [U] 2.97 81.44
A:221 [GLY] B:9 [U] 2.91 81.44
A:222 [THR] B:8 [U] 4.47 77.57
A:222 [THR] B:9 [U] 3.8 77.57
A:223 [ASP] B:9 [U] 2.99 base:SC 66.98
A:224 [PHE] B:9 [U] 2.95 sugar:BB 40.91
A:224 [PHE] B:10 [U] 3.32 base/AA stacks 40.91
A:225 [ARG] B:9 [U] 4.87 3.18
A:225 [ARG] B:10 [U] 3.69 3.18
A:242 [THR] B:6 [U] 3.52 98.85
A:242 [THR] B:7 [U] 2.67 98.85
A:243 [PRO] B:6 [U] 3.76 94.47
A:243 [PRO] B:7 [U] 4.66 94.47
A:244 [GLY] B:6 [U] 3.09 sugar:BB 88.32
A:244 [GLY] B:7 [U] 2.9 88.32
A:245 [ARG] B:6 [U] 4.56 86.08
A:245 [ARG] B:7 [U] 2.86 sugar:SC 86.08
A:245 [ARG] B:8 [U] 2.85 86.08
A:245 [ARG] B:9 [U] 4.35 86.08
A:248 [ASP] B:7 [U] 2.67 sugar:SC 83.83
A:248 [ASP] B:8 [U] 4.75 83.83
A:248 [ASP] B:10 [U] 2.62 sugar:SC 83.83
A:252 [LYS] B:10 [U] 2.76 sugar:SC 56.02
A:253 [TYR] B:10 [U] 4.19 11.27
A:271 [ARG] B:4 [U] 3.09 base:SC 73.66
A:271 [ARG] B:5 [U] 3.84 73.66
A:276 [GLY] B:6 [U] 4.61 81.16
A:277 [PHE] B:5 [U] 3.57 86.32
A:277 [PHE] B:6 [U] 3.39 86.32
A:280 [ASP] B:6 [U] 4.32 72.65
A:381 [PRO] B:3 [U] 4.75 77.49
A:381 [PRO] B:4 [U] 3.4 77.49
A:382 [THR] B:3 [U] 4.01 91.05
A:382 [THR] B:4 [U] 3.6 91.05
A:383 [VAL] B:3 [U] 4.86 71.95
A:383 [VAL] B:4 [U] 2.82 71.95
A:383 [VAL] B:5 [U] 3.73 71.95
A:384 [LYS] B:1 [U] 4.33 68.1
A:384 [LYS] B:2 [U] 4.06 68.1
A:384 [LYS] B:3 [U] 2.56 68.1
A:384 [LYS] B:4 [U] 4.56 68.1
A:407 [HIS] B:5 [U] 3.56 92.53
A:408 [GLY] B:5 [U] 2.63 86.76
A:408 [GLY] B:6 [U] 4.61 86.76
A:409 [LYS] B:5 [U] 4.97 59.83
A:413 [ASN] B:9 [U] 4.99 12.15
A:415 [ARG] B:5 [U] 4.33 96.5
A:415 [ARG] B:6 [U] 2.76 96.5
A:433 [THR] B:4 [U] 3.22 96.47
A:433 [THR] B:5 [U] 2.71 96.47
A:434 [ASP] B:4 [U] 3.34 89.55
A:435 [VAL] B:4 [U] 3.74 90.32
A:435 [VAL] B:5 [U] 3.67 90.32
A:435 [VAL] B:6 [U] 4.61 90.32
A:455 [SER] B:4 [U] 4.33 61.73
A:527 [SER] B:1 [U] 4.84 17.42
A:528 [ASP] B:1 [U] 2.9 47.3
A:528 [ASP] B:3 [U] 4.59 47.3
A:531 [ILE] B:1 [U] 4.03 39.81
A:531 [ILE] B:3 [U] 4.37 39.81
A:532 [SER] B:3 [U] 3.34 88.91
A:535 [SER] B:3 [U] 3.24 86.93
A:536 [SER] B:3 [U] 3.54 55.14
A:539 [SER] B:3 [U] 3.29 52.82
A:571 [PRO] B:1 [U] 4.12 41.81
A:572 [VAL] B:1 [U] 3.46 45.68
A:573 [SER] B:1 [U] 3.49 57.13
A:576 [PHE] B:1 [U] 3.31 base/AA stacks 18.42

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3I5X_A_B A: Atp-dependent RNA helicase mss116, Saccharomyces cerevisiae (genetically engineered) B: N/A P15424 P-loop containing nucleoside triphosphate hydrolases ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3I5X_A_B 3I62_A_B 1.00 1.0 0.1 1.0 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 3I61_A_B 0.99 1.0 0.13 1.0 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 5JB2_A_X,Y 0.79 0.61 2.02 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 3I5Y_A_B 0.99 1.0 0.16 0.9 P-loop containing nucleoside triphosphate hydrolases compare