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All interfaces > All interologs > Interface groups > group135 > 3I5Y_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3I5Y_A
3I5Y_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:188 [PRO] B:5 [U] 2.72 sugar:BB 92.08
A:188 [PRO] B:6 [U] 3.34 92.08
A:189 [THR] B:5 [U] 3.6 94.38
A:189 [THR] B:6 [U] 3.53 94.38
A:190 [ARG] B:5 [U] 4.83 87.91
A:190 [ARG] B:6 [U] 2.96 87.91
A:190 [ARG] B:7 [U] 2.79 87.91
A:190 [ARG] B:8 [U] 3.63 87.91
A:191 [ASP] B:6 [U] 4.82 90.73
A:219 [VAL] B:7 [U] 4.19 75.12
A:220 [GLY] B:7 [U] 3.23 84.05
A:220 [GLY] B:8 [U] 3.74 84.05
A:221 [GLY] B:7 [U] 4.43 81.44
A:221 [GLY] B:8 [U] 2.94 81.44
A:221 [GLY] B:9 [U] 3.37 81.44
A:222 [THR] B:8 [U] 4.48 77.57
A:222 [THR] B:9 [U] 3.9 77.57
A:223 [ASP] B:9 [U] 3.24 base/AA stacks 66.98
A:224 [PHE] B:7 [U] 4.82 40.91
A:224 [PHE] B:9 [U] 2.99 sugar:BB 40.91
A:224 [PHE] B:10 [U] 3.36 base/AA stacks 40.91
A:225 [ARG] B:9 [U] 4.65 3.18
A:225 [ARG] B:10 [U] 4.03 3.18
A:228 [MET] B:10 [U] 4.89 48.46
A:242 [THR] B:6 [U] 3.46 98.85
A:242 [THR] B:7 [U] 2.87 98.85
A:243 [PRO] B:6 [U] 3.75 94.47
A:243 [PRO] B:7 [U] 4.76 94.47
A:244 [GLY] B:6 [U] 3.03 sugar:BB 88.32
A:244 [GLY] B:7 [U] 3.01 88.32
A:245 [ARG] B:6 [U] 4.57 86.08
A:245 [ARG] B:7 [U] 2.87 sugar:SC 86.08
A:245 [ARG] B:8 [U] 2.73 86.08
A:245 [ARG] B:9 [U] 4.84 86.08
A:248 [ASP] B:7 [U] 2.59 sugar:SC 83.83
A:248 [ASP] B:8 [U] 4.6 83.83
A:248 [ASP] B:10 [U] 2.62 sugar:SC 83.83
A:252 [LYS] B:10 [U] 3.19 56.02
A:253 [TYR] B:10 [U] 3.31 base:SC 11.27
A:271 [ARG] B:4 [5BU] 3.14 base:SC 73.66
A:271 [ARG] B:5 [U] 3.6 73.66
A:277 [PHE] B:5 [U] 3.38 86.32
A:277 [PHE] B:6 [U] 3.4 86.32
A:280 [ASP] B:6 [U] 4.27 72.65
A:381 [PRO] B:3 [U] 4.08 77.49
A:381 [PRO] B:4 [5BU] 3.29 77.49
A:382 [THR] B:3 [U] 3.93 91.05
A:382 [THR] B:4 [5BU] 3.46 91.05
A:383 [VAL] B:3 [U] 4.88 71.95
A:383 [VAL] B:4 [5BU] 2.77 71.95
A:383 [VAL] B:5 [U] 3.8 71.95
A:384 [LYS] B:1 [U] 4.47 68.1
A:384 [LYS] B:2 [U] 3.75 68.1
A:384 [LYS] B:3 [U] 2.61 68.1
A:384 [LYS] B:4 [5BU] 4.62 68.1
A:407 [HIS] B:5 [U] 3.64 92.53
A:408 [GLY] B:5 [U] 2.87 86.76
A:408 [GLY] B:6 [U] 4.53 86.76
A:415 [ARG] B:5 [U] 4.5 96.5
A:415 [ARG] B:6 [U] 2.9 96.5
A:433 [THR] B:4 [5BU] 3.27 96.47
A:433 [THR] B:5 [U] 2.5 96.47
A:434 [ASP] B:4 [5BU] 3.35 89.55
A:435 [VAL] B:4 [5BU] 3.69 90.32
A:435 [VAL] B:5 [U] 3.78 90.32
A:435 [VAL] B:6 [U] 4.64 90.32
A:455 [SER] B:4 [5BU] 4.2 61.73
A:527 [SER] B:1 [U] 4.91 17.42
A:528 [ASP] B:1 [U] 3.31 47.3
A:528 [ASP] B:3 [U] 4.97 47.3
A:531 [ILE] B:1 [U] 3.56 39.81
A:531 [ILE] B:3 [U] 4.59 39.81
A:532 [SER] B:1 [U] 4.53 88.91
A:532 [SER] B:3 [U] 3.44 88.91
A:535 [SER] B:3 [U] 3.27 86.93
A:536 [SER] B:3 [U] 3.55 55.14
A:539 [SER] B:3 [U] 4.17 52.82
A:571 [PRO] B:1 [U] 4.16 41.81
A:572 [VAL] B:1 [U] 3.92 45.68
A:573 [SER] B:1 [U] 3.97 base:SC 57.13
A:576 [PHE] B:1 [U] 3.37 base/AA stacks 18.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3I5Y_A_B A: Atp-dependent RNA helicase mss116, Saccharomyces cerevisiae (genetically engineered) B: N/A P15424 P-loop containing nucleoside triphosphate hydrolases ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3I5X_A_B 3I5Y_A_B 0.99 1.0 0.16 0.9 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 3I61_A_B 0.99 1.0 0.2 0.9 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 5JB2_A_X,Y 0.80 0.61 1.92 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 3I62_A_B 0.99 1.0 0.15 0.9 P-loop containing nucleoside triphosphate hydrolases compare