RNAprotDB

All interfaces > All interologs > Interface groups > group135 > 3I61_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

3I61_A
3I61_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:188 [PRO] B:5 [U] 2.63 sugar:BB 92.08
A:188 [PRO] B:6 [U] 3.32 92.08
A:189 [THR] B:5 [U] 3.71 94.38
A:189 [THR] B:6 [U] 3.45 94.38
A:190 [ARG] B:5 [U] 4.81 87.91
A:190 [ARG] B:6 [U] 2.87 87.91
A:190 [ARG] B:7 [U] 2.84 87.91
A:190 [ARG] B:8 [U] 3.65 87.91
A:191 [ASP] B:6 [U] 4.6 90.73
A:219 [VAL] B:7 [U] 4.15 75.12
A:220 [GLY] B:7 [U] 3.21 84.05
A:220 [GLY] B:8 [U] 3.9 84.05
A:221 [GLY] B:7 [U] 4.25 81.44
A:221 [GLY] B:8 [U] 2.93 81.44
A:221 [GLY] B:9 [U] 3.48 81.44
A:222 [THR] B:8 [U] 4.54 77.57
A:222 [THR] B:9 [U] 3.64 77.57
A:223 [ASP] B:9 [U] 2.83 66.98
A:224 [PHE] B:7 [U] 5.0 40.91
A:224 [PHE] B:9 [U] 2.73 sugar:BB 40.91
A:224 [PHE] B:10 [U] 3.38 base/AA stacks 40.91
A:225 [ARG] B:9 [U] 4.66 3.18
A:225 [ARG] B:10 [U] 3.89 3.18
A:242 [THR] B:6 [U] 3.54 98.85
A:242 [THR] B:7 [U] 2.7 98.85
A:243 [PRO] B:6 [U] 3.74 94.47
A:243 [PRO] B:7 [U] 4.67 94.47
A:244 [GLY] B:6 [U] 3.08 sugar:BB 88.32
A:244 [GLY] B:7 [U] 2.86 88.32
A:245 [ARG] B:6 [U] 4.53 86.08
A:245 [ARG] B:7 [U] 2.82 sugar:SC 86.08
A:245 [ARG] B:8 [U] 2.97 86.08
A:245 [ARG] B:9 [U] 4.41 86.08
A:248 [ASP] B:7 [U] 2.62 sugar:SC 83.83
A:248 [ASP] B:8 [U] 4.73 83.83
A:248 [ASP] B:10 [U] 2.67 sugar:SC 83.83
A:252 [LYS] B:10 [U] 2.89 sugar:SC 56.02
A:253 [TYR] B:10 [U] 4.26 11.27
A:271 [ARG] B:4 [U] 2.98 base:SC 73.66
A:271 [ARG] B:5 [U] 3.81 73.66
A:276 [GLY] B:6 [U] 4.73 81.16
A:277 [PHE] B:5 [U] 3.47 86.32
A:277 [PHE] B:6 [U] 3.56 86.32
A:280 [ASP] B:6 [U] 4.38 72.65
A:381 [PRO] B:4 [U] 3.38 77.49
A:382 [THR] B:3 [U] 4.49 91.05
A:382 [THR] B:4 [U] 3.43 91.05
A:383 [VAL] B:4 [U] 2.91 71.95
A:383 [VAL] B:5 [U] 3.8 71.95
A:384 [LYS] B:1 [U] 4.32 68.1
A:384 [LYS] B:2 [U] 4.08 68.1
A:384 [LYS] B:3 [U] 2.69 68.1
A:384 [LYS] B:4 [U] 4.64 68.1
A:407 [HIS] B:5 [U] 3.57 92.53
A:408 [GLY] B:5 [U] 2.7 86.76
A:408 [GLY] B:6 [U] 4.67 86.76
A:409 [LYS] B:4 [U] 4.96 59.83
A:413 [ASN] B:9 [U] 4.63 12.15
A:415 [ARG] B:5 [U] 4.41 96.5
A:415 [ARG] B:6 [U] 2.81 96.5
A:433 [THR] B:4 [U] 3.21 96.47
A:433 [THR] B:5 [U] 2.65 96.47
A:434 [ASP] B:4 [U] 3.36 89.55
A:434 [ASP] B:5 [U] 4.9 89.55
A:435 [VAL] B:4 [U] 3.63 90.32
A:435 [VAL] B:5 [U] 3.65 90.32
A:435 [VAL] B:6 [U] 4.68 90.32
A:455 [SER] B:4 [U] 4.35 61.73
A:528 [ASP] B:1 [U] 2.97 47.3
A:528 [ASP] B:3 [U] 4.57 47.3
A:531 [ILE] B:1 [U] 4.14 39.81
A:531 [ILE] B:3 [U] 4.36 39.81
A:532 [SER] B:3 [U] 3.28 88.91
A:535 [SER] B:3 [U] 3.55 86.93
A:536 [SER] B:3 [U] 3.56 55.14
A:539 [SER] B:3 [U] 3.16 52.82
A:571 [PRO] B:1 [U] 4.28 41.81
A:572 [VAL] B:1 [U] 3.57 45.68
A:573 [SER] B:1 [U] 3.5 57.13
A:576 [PHE] B:1 [U] 3.23 base/AA stacks 18.42

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3I61_A_B A: Atp-dependent RNA helicase mss116, Saccharomyces cerevisiae (genetically engineered) B: N/A P15424 P-loop containing nucleoside triphosphate hydrolases ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3I61_A_B 5JB2_A_X,Y 0.77 0.61 2.03 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3I61_A_B 3I62_A_B 0.99 1.0 0.16 0.98 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 3I61_A_B 0.99 1.0 0.13 1.0 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 3I61_A_B 0.99 1.0 0.2 0.9 P-loop containing nucleoside triphosphate hydrolases compare