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All interfaces > All interologs > Interface groups > group135 > 3I62_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3I62_A
3I62_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:188 [PRO] B:5 [U] 2.68 sugar:BB 92.08
A:188 [PRO] B:6 [U] 3.35 92.08
A:189 [THR] B:5 [U] 3.78 94.38
A:189 [THR] B:6 [U] 3.41 94.38
A:190 [ARG] B:5 [U] 4.82 87.91
A:190 [ARG] B:6 [U] 2.82 87.91
A:190 [ARG] B:7 [U] 2.8 87.91
A:190 [ARG] B:8 [U] 3.75 87.91
A:191 [ASP] B:6 [U] 4.68 90.73
A:219 [VAL] B:7 [U] 4.17 75.12
A:220 [GLY] B:7 [U] 3.23 84.05
A:220 [GLY] B:8 [U] 3.7 84.05
A:221 [GLY] B:7 [U] 4.4 81.44
A:221 [GLY] B:8 [U] 2.83 81.44
A:221 [GLY] B:9 [U] 3.59 81.44
A:222 [THR] B:8 [U] 4.45 77.57
A:222 [THR] B:9 [U] 3.72 77.57
A:223 [ASP] B:9 [U] 2.73 66.98
A:224 [PHE] B:7 [U] 4.99 40.91
A:224 [PHE] B:9 [U] 2.77 sugar:BB 40.91
A:224 [PHE] B:10 [U] 3.32 base/AA stacks 40.91
A:225 [ARG] B:9 [U] 4.65 3.18
A:225 [ARG] B:10 [U] 3.71 3.18
A:242 [THR] B:6 [U] 3.51 98.85
A:242 [THR] B:7 [U] 2.72 98.85
A:243 [PRO] B:6 [U] 3.75 94.47
A:243 [PRO] B:7 [U] 4.72 94.47
A:244 [GLY] B:6 [U] 3.09 sugar:BB 88.32
A:244 [GLY] B:7 [U] 2.91 88.32
A:245 [ARG] B:6 [U] 4.53 86.08
A:245 [ARG] B:7 [U] 2.86 sugar:SC 86.08
A:245 [ARG] B:8 [U] 2.97 86.08
A:245 [ARG] B:9 [U] 4.45 86.08
A:248 [ASP] B:7 [U] 2.59 sugar:SC 83.83
A:248 [ASP] B:8 [U] 4.54 83.83
A:248 [ASP] B:10 [U] 2.58 sugar:SC 83.83
A:252 [LYS] B:10 [U] 2.68 sugar:SC 56.02
A:253 [TYR] B:10 [U] 3.92 base:SC 11.27
A:271 [ARG] B:4 [U] 3.1 base:SC 73.66
A:271 [ARG] B:5 [U] 3.85 73.66
A:276 [GLY] B:6 [U] 4.64 81.16
A:277 [PHE] B:5 [U] 3.57 86.32
A:277 [PHE] B:6 [U] 3.45 86.32
A:280 [ASP] B:6 [U] 4.29 72.65
A:381 [PRO] B:3 [U] 4.35 77.49
A:381 [PRO] B:4 [U] 3.38 77.49
A:382 [THR] B:3 [U] 3.91 91.05
A:382 [THR] B:4 [U] 3.51 91.05
A:383 [VAL] B:3 [U] 4.81 71.95
A:383 [VAL] B:4 [U] 2.75 71.95
A:383 [VAL] B:5 [U] 3.79 71.95
A:384 [LYS] B:1 [U] 4.32 68.1
A:384 [LYS] B:2 [U] 4.22 68.1
A:384 [LYS] B:3 [U] 2.71 68.1
A:384 [LYS] B:4 [U] 4.61 68.1
A:407 [HIS] B:5 [U] 3.57 92.53
A:408 [GLY] B:5 [U] 2.69 86.76
A:408 [GLY] B:6 [U] 4.62 86.76
A:413 [ASN] B:9 [U] 4.91 12.15
A:415 [ARG] B:5 [U] 4.45 96.5
A:415 [ARG] B:6 [U] 2.9 96.5
A:433 [THR] B:4 [U] 3.25 96.47
A:433 [THR] B:5 [U] 2.6 96.47
A:434 [ASP] B:4 [U] 3.36 89.55
A:434 [ASP] B:5 [U] 4.97 89.55
A:435 [VAL] B:4 [U] 3.62 90.32
A:435 [VAL] B:5 [U] 3.61 90.32
A:435 [VAL] B:6 [U] 4.59 90.32
A:455 [SER] B:4 [U] 4.27 61.73
A:527 [SER] B:1 [U] 4.98 17.42
A:528 [ASP] B:1 [U] 3.0 47.3
A:528 [ASP] B:3 [U] 4.66 47.3
A:531 [ILE] B:1 [U] 4.05 39.81
A:531 [ILE] B:3 [U] 4.45 39.81
A:532 [SER] B:3 [U] 3.41 88.91
A:535 [SER] B:3 [U] 3.2 86.93
A:536 [SER] B:3 [U] 3.41 55.14
A:539 [SER] B:3 [U] 3.59 52.82
A:571 [PRO] B:1 [U] 4.32 41.81
A:572 [VAL] B:1 [U] 3.54 45.68
A:573 [SER] B:1 [U] 3.4 base:BB 57.13
A:576 [PHE] B:1 [U] 3.38 base/AA stacks 18.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3I62_A_B A: Atp-dependent RNA helicase mss116, Saccharomyces cerevisiae (genetically engineered) B: N/A P15424 P-loop containing nucleoside triphosphate hydrolases ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3I62_A_B 5JB2_A_X,Y 0.80 0.61 2.0 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3I61_A_B 3I62_A_B 0.99 1.0 0.16 0.98 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 3I62_A_B 1.00 1.0 0.1 1.0 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 3I62_A_B 0.99 1.0 0.15 0.9 P-loop containing nucleoside triphosphate hydrolases compare