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All interfaces > All interologs > Interface groups > group135 > 3OG8_A_C,D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3OG8_A
3OG8_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:811 [ARG] D:20 [G] 4.02 C:9 [C] 70.26
A:811 [ARG] D:21 [C] 2.96 C:8 [G] 70.26
A:829 [SER] C:1 [G] 4.12 D:28 [C] 72.08
A:829 [SER] C:2 [G] 3.6 D:27 [C] 72.08
A:830 [HIS] C:1 [G] 2.73 D:28 [C] sugar:SC 86.22
A:830 [HIS] C:2 [G] 3.64 D:27 [C] 86.22
A:831 [TYR] C:1 [G] 4.82 D:28 [C] 87.06
A:849 [LYS] D:25 [C] 3.42 C:4 [G] 67.63
A:849 [LYS] D:26 [G] 3.61 C:3 [C] 67.63
A:851 [LYS] D:28 [C] 3.67 C:1 [G] 44.48
A:852 [GLN] D:28 [C] 4.86 C:1 [G] 0.05
A:853 [PHE] C:1 [G] 3.16 D:28 [C] base/AA stacks 41.95
A:853 [PHE] D:28 [C] 3.4 C:1 [G] 41.95
A:854 [SER] C:1 [G] 4.95 D:28 [C] 65.94
A:854 [SER] D:28 [C] 4.12 C:1 [G] 65.94
A:858 [LYS] C:1 [G] 2.71 D:28 [C] base:SC 69.86
A:858 [LYS] D:28 [C] 4.52 C:1 [G] 69.86
A:871 [HIS] D:22 [G] 4.14 C:7 [C] 63.44
A:873 [TRP] C:1 [G] 4.66 D:28 [C] 92.7
A:874 [GLY] C:1 [G] 3.47 D:28 [C] 98.98
A:875 [ILE] C:1 [G] 3.41 D:28 [C] 74.74
A:886 [VAL] C:1 [G] 2.99 D:28 [C] 68.74
A:887 [ILE] C:1 [G] 3.74 D:28 [C] 81.1
A:887 [ILE] C:2 [G] 4.48 D:27 [C] 81.1
A:888 [LYS] C:1 [G] 3.72 D:28 [C] 84.8
A:888 [LYS] C:2 [G] 3.57 D:27 [C] 84.8
A:889 [ILE] C:2 [G] 4.21 D:27 [C] 88.16
A:890 [GLU] D:21 [C] 4.7 C:8 [G] 58.54
A:904 [LEU] D:20 [G] 4.08 C:9 [C] 0.77
A:904 [LEU] D:21 [C] 4.85 C:8 [G] 0.77
A:905 [TYR] D:20 [G] 4.69 C:9 [C] 7.0
A:906 [SER] D:20 [G] 4.18 C:9 [C] 70.53
A:907 [LYS] C:3 [C] 3.41 D:26 [G] 89.71
A:907 [LYS] C:4 [G] 3.07 D:25 [C] 89.71
A:908 [TRP] C:1 [G] 4.44 D:28 [C] 98.48
A:908 [TRP] C:2 [G] 3.16 D:27 [C] 98.48
A:909 [LYS] C:3 [C] 4.54 D:26 [G] 79.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3OG8_A_C,D A: Atp-dependent RNA helicase ddx58, Homo sapiens (genetically engineered) C: N/A D: N/A O95786 Mss4-like ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2YKG_A_C,D 3OG8_A_C,D 0.81 0.82 0.73 0.3 Mss4-like compare
3OG8_A_C,D 3ZD7_A_C,D 0.81 0.8 0.61 0.3 Mss4-like compare
3OG8_A_C,D 5JB2_A_X,Y 0.51 0.75 1.43 0.2 Mss4-like compare