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All interfaces > All interologs > Interface groups > group135 > 3ZD7_A_C,D

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3ZD7_A
3ZD7_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:298 [ASN] D:18 [C] 3.59 C:3 [G] sugar:BB 79.86
A:298 [ASN] D:19 [G] 3.42 C:2 [C] 79.86
A:299 [GLN] D:18 [C] 4.01 C:3 [G] 79.33
A:299 [GLN] D:19 [G] 3.67 C:2 [C] 79.33
A:300 [ILE] D:18 [C] 4.72 C:3 [G] 80.6
A:300 [ILE] D:19 [G] 2.79 C:2 [C] 80.6
A:300 [ILE] D:20 [C] 3.44 C:1 [G] 80.6
A:301 [PRO] D:19 [G] 3.92 C:2 [C] 72.64
A:325 [SER] D:20 [C] 3.64 C:1 [G] 82.34
A:326 [GLY] D:20 [C] 2.7 C:1 [G] 88.95
A:327 [ALA] D:20 [C] 4.94 C:1 [G] 58.15
A:347 [THR] D:19 [G] 3.63 C:2 [C] 98.65
A:347 [THR] D:20 [C] 2.85 C:1 [G] 98.65
A:349 [GLN] C:3 [G] 4.81 D:18 [C] 90.7
A:349 [GLN] D:19 [G] 3.33 C:2 [C] 90.7
A:349 [GLN] D:20 [C] 3.61 C:1 [G] 90.7
A:350 [ILE] D:20 [C] 3.94 C:1 [G] 89.53
A:353 [ASN] D:20 [C] 3.2 C:1 [G] sugar:SC 93.7
A:376 [ASN] C:5 [G] 4.48 D:16 [C] 94.4
A:378 [SER] C:5 [G] 4.77 D:16 [C] 55.48
A:379 [LYS] C:4 [C] 3.64 D:17 [G] 75.6
A:379 [LYS] C:5 [G] 2.14 D:16 [C] 75.6
A:379 [LYS] C:6 [C] 3.11 D:15 [G] 75.6
A:380 [GLN] C:4 [C] 3.51 D:17 [G] 57.35
A:380 [GLN] C:5 [G] 3.39 D:16 [C] 57.35
A:381 [HIS] C:4 [C] 3.54 D:17 [G] 79.66
A:381 [HIS] C:5 [G] 4.3 D:16 [C] 79.66
A:382 [PRO] C:4 [C] 3.71 D:17 [G] 85.08
A:498 [GLN] D:13 [G] 4.81 C:8 [C] 13.81
A:499 [SER] C:9 [G] 4.75 D:12 [C] 43.37
A:508 [LYS] C:9 [G] 2.99 D:12 [C] 27.62
A:508 [LYS] C:10 [C] 3.0 D:11 [G] 27.62
A:511 [GLN] D:14 [C] 3.21 C:7 [G] 81.4
A:514 [VAL] D:14 [C] 4.18 C:7 [G] 77.43
A:514 [VAL] D:15 [G] 4.59 C:6 [C] 77.43
A:515 [THR] D:13 [G] 4.0 C:8 [C] 21.04
A:515 [THR] D:14 [C] 4.16 C:7 [G] 21.04
A:750 [LYS] C:8 [C] 4.24 D:13 [G] 81.53
A:829 [CYS] C:1 [G] 4.05 D:20 [C] 61.61
A:829 [CYS] C:2 [C] 3.12 D:19 [G] 61.61
A:830 [HIS] C:1 [G] 3.01 D:20 [C] sugar:SC 86.88
A:830 [HIS] C:2 [C] 3.67 D:19 [G] 86.88
A:831 [TYR] C:1 [G] 4.59 D:20 [C] 87.4
A:853 [PHE] C:1 [G] 3.23 D:20 [C] base/AA stacks 2.39
A:853 [PHE] D:20 [C] 3.28 C:1 [G] base/AA stacks 2.39
A:854 [SER] D:20 [C] 3.13 C:1 [G] sugar:SC 46.46
A:856 [PHE] C:1 [G] 4.49 D:20 [C] 24.97
A:858 [LYS] C:1 [G] 4.95 D:20 [C] 46.64
A:874 [GLY] C:1 [G] 3.74 D:20 [C] 96.29
A:875 [ILE] C:1 [G] 3.36 D:20 [C] 66.81
A:886 [VAL] C:1 [G] 3.45 D:20 [C] 67.53
A:887 [ILE] C:1 [G] 3.8 D:20 [C] 69.73
A:887 [ILE] C:2 [C] 4.58 D:19 [G] 69.73
A:888 [LYS] C:1 [G] 3.3 D:20 [C] 78.4
A:888 [LYS] C:2 [C] 3.47 D:19 [G] 78.4
A:889 [ILE] C:2 [C] 4.19 D:19 [G] 89.15
A:890 [GLU] C:1 [G] 4.66 D:20 [C] 34.81
A:890 [GLU] C:2 [C] 3.92 D:19 [G] 34.81
A:904 [LEU] D:13 [G] 4.91 C:8 [C] 28.03
A:906 [SER] C:2 [C] 4.84 D:19 [G] 74.93
A:906 [SER] D:13 [G] 4.56 C:8 [C] 74.93
A:907 [LYS] C:3 [G] 4.87 D:18 [C] 82.37
A:908 [TRP] C:1 [G] 4.65 D:20 [C] 96.12
A:908 [TRP] C:2 [C] 3.52 D:19 [G] 96.12
A:909 [LYS] C:3 [G] 4.48 D:18 [C] 73.93
A:910 [ASP] D:12 [C] 4.66 C:9 [G] 61.69

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 3ZD7_A_C,D A: Probable atp-dependent RNA helicase ddx58, Homo sapiens (natural) C: RNA duplex, Synthetic construct (synthetic) D: RNA duplex, Synthetic construct (synthetic) O95786 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2YKG_A_C,D 3ZD7_A_C,D 0.82 0.91 2.9 0.73 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
3OG8_A_C,D 3ZD7_A_C,D 0.81 0.8 0.61 0.3 Mss4-like compare
3ZD7_A_C,D 5JAJ_A_X,Y 0.39 0.71 4.22 0.31 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
3ZD7_A_C,D 5JB2_A_X,Y 0.39 0.73 3.99 0.31 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
3ZD7_A_C,D 5JBG_A_X 0.37 0.71 4.53 0.34 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare