RNAprotDB

All interfaces > All interologs > Interface groups > group135 > 5JAJ_A_X,Y

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

5JAJ_A
5JAJ_X,Y
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:55 [ASN] Y:18 [U] 3.85 X:4 [A] sugar:BB 90.87
A:55 [ASN] Y:19 [A] 3.57 X:3 [U] 90.87
A:56 [LYS] Y:18 [U] 2.75 X:4 [A] sugar:SC 85.77
A:56 [LYS] Y:19 [A] 3.44 X:3 [U] 85.77
A:57 [VAL] Y:19 [A] 2.85 X:3 [U] 83.05
A:57 [VAL] Y:20 [C] 3.23 X:2 [G] 83.05
A:58 [HIS] Y:19 [A] 4.68 X:3 [U] 80.57
A:81 [SER] Y:20 [C] 3.97 X:2 [G] 84.52
A:82 [GLY] Y:20 [C] 2.91 X:2 [G] 73.04
A:82 [GLY] Y:21 [C] 3.16 X:1 [G] 73.04
A:83 [ASP] Y:21 [C] 4.96 X:1 [G] 49.63
A:85 [SER] Y:20 [C] 4.85 X:2 [G] 40.54
A:85 [SER] Y:21 [C] 2.61 X:1 [G] 40.54
A:103 [THR] Y:19 [A] 3.67 X:3 [U] 96.43
A:103 [THR] Y:20 [C] 2.71 X:2 [G] 96.43
A:105 [GLN] Y:19 [A] 3.43 X:3 [U] 75.28
A:105 [GLN] Y:20 [C] 3.4 X:2 [G] 75.28
A:106 [ILE] Y:20 [C] 3.66 X:2 [G] 87.03
A:106 [ILE] Y:21 [C] 3.59 X:1 [G] 87.03
A:109 [ASN] Y:20 [C] 2.9 X:2 [G] sugar:SC 71.65
A:109 [ASN] Y:21 [C] 4.05 X:1 [G] 71.65
A:135 [HIS] X:6 [G] 4.86 Y:16 [C] 90.59
A:137 [GLN] X:6 [G] 4.84 Y:16 [C] 62.79
A:138 [LYS] X:6 [G] 3.18 Y:16 [C] 87.21
A:138 [LYS] X:7 [U] 2.9 Y:15 [A] 87.21
A:139 [GLU] X:5 [C] 3.36 Y:17 [G] 78.85
A:139 [GLU] X:6 [G] 2.87 Y:16 [C] 78.85
A:140 [ALA] X:5 [C] 3.38 Y:17 [G] 71.1
A:140 [ALA] X:6 [G] 4.06 Y:16 [C] 71.1
A:141 [VAL] X:5 [C] 4.5 Y:17 [G] 74.47
A:144 [LYS] X:4 [A] 3.91 Y:18 [U] 78.84
A:144 [LYS] X:5 [C] 3.8 Y:17 [G] 78.84
A:256 [GLN] X:9 [C] 4.6 Y:13 [G] 86.0
A:256 [GLN] Y:14 [U] 4.75 X:8 [A] 86.0
A:256 [GLN] Y:15 [A] 3.37 X:7 [U] sugar:SC 86.0
A:257 [VAL] X:9 [C] 4.15 Y:13 [G] 9.35
A:257 [VAL] X:10 [C] 3.72 Y:12 [G] 9.35
A:259 [GLU] Y:14 [U] 3.9 X:8 [A] 95.11
A:259 [GLU] Y:15 [A] 3.6 X:7 [U] 95.11
A:260 [GLN] X:9 [C] 4.17 Y:13 [G] 95.51
A:260 [GLN] X:10 [C] 2.85 Y:12 [G] base:SC 95.51
A:260 [GLN] Y:12 [G] 4.0 X:10 [C] 95.51
A:260 [GLN] Y:13 [G] 3.02 X:9 [C] base:SC 95.51
A:260 [GLN] Y:14 [U] 3.25 X:8 [A] base/AA stacks 95.51
A:261 [ARG] X:10 [C] 2.86 Y:12 [G] sugar:SC 70.1
A:261 [ARG] X:11 [C] 4.0 70.1
A:263 [VAL] Y:14 [U] 3.57 X:8 [A] 83.2
A:263 [VAL] Y:15 [A] 3.76 X:7 [U] 83.2
A:264 [GLU] Y:12 [G] 4.43 X:10 [C] 66.46
A:264 [GLU] Y:13 [G] 2.62 X:9 [C] sugar:SC 66.46
A:264 [GLU] Y:14 [U] 4.41 X:8 [A] 66.46
A:267 [ASN] Y:13 [G] 4.1 X:9 [C] 61.46
A:267 [ASN] Y:14 [U] 3.0 X:8 [A] 61.46
A:285 [ARG] Y:14 [U] 4.78 X:8 [A] 95.35
A:285 [ARG] Y:15 [A] 2.6 X:7 [U] 95.35
A:285 [ARG] Y:16 [C] 3.89 X:6 [G] 95.35
A:373 [LYS] Y:15 [A] 4.09 X:7 [U] 43.13
A:373 [LYS] Y:16 [C] 3.4 X:6 [G] 43.13
A:373 [LYS] Y:17 [G] 3.26 X:5 [C] 43.13
A:374 [THR] Y:16 [C] 3.41 X:6 [G] 92.93
A:374 [THR] Y:17 [G] 3.47 X:5 [C] 92.93
A:375 [ARG] Y:16 [C] 4.67 X:6 [G] 83.03
A:375 [ARG] Y:17 [G] 2.82 X:5 [C] 83.03
A:375 [ARG] Y:18 [U] 2.8 X:4 [A] 83.03
A:376 [GLN] Y:17 [G] 4.43 X:5 [C] 72.9
A:402 [THR] Y:18 [U] 3.7 X:4 [A] 83.15
A:403 [GLY] Y:18 [U] 2.74 X:4 [A] 83.23
A:403 [GLY] Y:19 [A] 3.68 X:3 [U] 83.23
A:404 [SER] Y:18 [U] 4.43 X:4 [A] 78.9
A:404 [SER] Y:19 [A] 2.61 X:3 [U] 78.9
A:404 [SER] Y:20 [C] 4.76 X:2 [G] 78.9
A:405 [GLY] Y:18 [U] 3.29 X:4 [A] 61.03
A:405 [GLY] Y:19 [A] 4.68 X:3 [U] 61.03
A:406 [HIS] X:1 [G] 2.63 Y:21 [C] base/AA stacks 54.61
A:406 [HIS] X:2 [G] 2.73 Y:20 [C] base:SC 54.61
A:406 [HIS] X:3 [U] 4.36 Y:19 [A] 54.61
A:406 [HIS] Y:19 [A] 4.44 X:3 [U] 54.61
A:406 [HIS] Y:20 [C] 4.52 X:2 [G] 54.61
A:407 [SER] X:1 [G] 3.39 Y:21 [C] 84.25
A:407 [SER] Y:17 [G] 4.78 X:5 [C] 84.25
A:408 [ASN] X:1 [G] 3.07 Y:21 [C] 59.67
A:409 [GLN] Y:16 [C] 2.91 X:6 [G] 68.26
A:409 [GLN] Y:17 [G] 4.69 X:5 [C] 68.26
A:418 [GLN] Y:19 [A] 4.32 X:3 [U] 93.91
A:436 [THR] Y:17 [G] 3.73 X:5 [C] 98.71
A:436 [THR] Y:18 [U] 2.65 X:4 [A] 98.71
A:437 [SER] Y:17 [G] 2.83 X:5 [C] sugar:SC 86.18
A:437 [SER] Y:18 [U] 4.6 X:4 [A] 86.18
A:438 [VAL] Y:18 [U] 3.83 X:4 [A] 96.48
A:438 [VAL] Y:19 [A] 4.23 X:3 [U] 96.48
A:457 [MET] X:7 [U] 4.4 Y:15 [A] 90.82
A:457 [MET] X:8 [A] 3.44 Y:14 [U] 90.82
A:457 [MET] X:9 [C] 4.67 Y:13 [G] 90.82
A:458 [THR] X:7 [U] 4.38 Y:15 [A] 62.54
A:458 [THR] X:8 [A] 4.18 Y:14 [U] 62.54
A:459 [ASN] X:7 [U] 3.95 Y:15 [A] 79.47
A:459 [ASN] X:8 [A] 3.51 Y:14 [U] 79.47
A:486 [ARG] X:9 [C] 3.04 Y:13 [G] 60.29
A:486 [ARG] X:10 [C] 3.04 Y:12 [G] 60.29
A:490 [ARG] X:8 [A] 2.85 Y:14 [U] 77.63
A:490 [ARG] X:9 [C] 3.79 Y:13 [G] 77.63
A:537 [ARG] Y:12 [G] 3.95 X:10 [C] 15.39
A:571 [GLU] Y:21 [C] 2.51 X:1 [G] sugar:SC 93.83
A:572 [ALA] X:3 [U] 4.39 Y:19 [A] 19.67
A:573 [MET] X:2 [G] 3.4 Y:20 [C] 65.02
A:573 [MET] X:3 [U] 3.17 Y:19 [A] 65.02
A:573 [MET] Y:20 [C] 4.13 X:2 [G] 65.02
A:573 [MET] Y:21 [C] 3.45 X:1 [G] 65.02
A:574 [HIS] X:1 [G] 4.05 Y:21 [C] 94.67
A:574 [HIS] X:2 [G] 2.78 Y:20 [C] sugar:SC 94.67
A:574 [HIS] X:3 [U] 4.65 Y:19 [A] 94.67
A:574 [HIS] Y:21 [C] 2.93 X:1 [G] sugar:SC 94.67
A:575 [HIS] X:2 [G] 4.63 Y:20 [C] 89.08
A:575 [HIS] X:3 [U] 4.17 Y:19 [A] 89.08
A:595 [PHE] X:1 [G] 3.19 Y:21 [C] base/AA stacks 25.68
A:597 [ARG] Y:21 [C] 2.98 X:1 [G] 81.61
A:599 [PHE] X:1 [G] 4.68 Y:21 [C] 81.76
A:599 [PHE] Y:21 [C] 3.42 X:1 [G] base/AA stacks 81.76
A:600 [ARG] Y:21 [C] 4.84 X:1 [G] 42.04
A:602 [TRP] X:1 [G] 3.81 Y:21 [C] 87.67
A:602 [TRP] Y:21 [C] 3.52 X:1 [G] 87.67
A:618 [GLY] X:1 [G] 4.62 Y:21 [C] 92.17
A:619 [MET] X:1 [G] 3.04 Y:21 [C] 73.05
A:619 [MET] X:2 [G] 3.55 Y:20 [C] 73.05
A:630 [ILE] X:2 [G] 3.89 Y:20 [C] 70.84
A:631 [LEU] X:2 [G] 4.02 Y:20 [C] 66.73
A:631 [LEU] X:3 [U] 4.06 Y:19 [A] 66.73
A:632 [SER] X:1 [G] 4.85 Y:21 [C] 38.18
A:632 [SER] X:2 [G] 2.56 Y:20 [C] 38.18
A:632 [SER] X:3 [U] 3.66 Y:19 [A] 38.18
A:633 [ILE] X:2 [G] 4.83 Y:20 [C] 78.77
A:633 [ILE] X:3 [U] 3.14 Y:19 [A] 78.77
A:634 [LYS] X:2 [G] 3.29 Y:20 [C] 79.64
A:635 [ASN] X:2 [G] 4.6 Y:20 [C] 72.74
A:645 [LYS] Y:12 [G] 4.2 X:10 [C] 54.72
A:645 [LYS] Y:13 [G] 2.46 X:9 [C] 54.72
A:648 [LYS] X:4 [A] 4.35 Y:18 [U] 79.58
A:648 [LYS] Y:14 [U] 2.79 X:8 [A] 79.58
A:648 [LYS] Y:15 [A] 2.85 X:7 [U] 79.58
A:649 [LYS] X:4 [A] 3.54 Y:18 [U] 80.37
A:649 [LYS] X:5 [C] 2.51 Y:17 [G] 80.37
A:650 [TRP] X:2 [G] 4.77 Y:20 [C] 87.9
A:650 [TRP] X:3 [U] 3.01 Y:19 [A] 87.9
A:650 [TRP] X:4 [A] 3.29 Y:18 [U] 87.9
A:651 [SER] X:3 [U] 4.99 Y:19 [A] 74.47
A:651 [SER] X:4 [A] 2.94 Y:18 [U] 74.47
A:651 [SER] X:5 [C] 4.69 Y:17 [G] 74.47

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 5JAJ_A_X,Y A: Lgp2, Gallus gallus (genetically engineered) X: Synthetic construct (synthetic) Y: Synthetic construct (synthetic) G0YYQ5 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2YKG_A_C,D 5JAJ_A_X,Y 0.60 0.71 2.58 0.33 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
5JAJ_A_X,Y 5JB2_A_X,Y 0.97 1.0 0.28 0.9 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
5JAJ_A_X,Y 5ZC9_A_B 0.66 0.76 2.09 0.2 P-loop containing nucleoside triphosphate hydrolases compare
5JAJ_A_X,Y 5JBG_A_X 0.90 0.99 0.92 0.62 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
3ZD7_A_C,D 5JAJ_A_X,Y 0.39 0.71 4.22 0.31 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare