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All interfaces > All interologs > Interface groups > group135 > 5JB2_A_X,Y

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Rim - Core

Contacts -

5JB2_A
5JB2_X,Y
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:55 [ASN] Y:18 [U] 3.88 X:4 [A] sugar:BB 80.72
A:55 [ASN] Y:19 [A] 3.55 X:3 [U] 80.72
A:56 [LYS] Y:18 [U] 3.22 X:4 [A] sugar:SC 82.88
A:56 [LYS] Y:19 [A] 3.39 X:3 [U] 82.88
A:57 [VAL] Y:19 [A] 2.75 X:3 [U] 81.73
A:57 [VAL] Y:20 [C] 3.07 X:2 [G] 81.73
A:58 [HIS] Y:19 [A] 4.71 X:3 [U] 72.4
A:81 [SER] Y:20 [C] 3.54 X:2 [G] 81.06
A:82 [GLY] Y:20 [C] 3.4 X:2 [G] 73.34
A:82 [GLY] Y:21 [C] 3.34 X:1 [GTP] 73.34
A:85 [SER] Y:21 [C] 2.98 X:1 [GTP] 39.08
A:103 [THR] Y:19 [A] 3.68 X:3 [U] 97.04
A:103 [THR] Y:20 [C] 2.71 X:2 [G] 97.04
A:105 [GLN] Y:19 [A] 3.38 X:3 [U] 73.51
A:105 [GLN] Y:20 [C] 3.44 X:2 [G] 73.51
A:106 [ILE] Y:20 [C] 3.7 X:2 [G] 81.05
A:106 [ILE] Y:21 [C] 3.59 X:1 [GTP] 81.05
A:109 [ASN] Y:20 [C] 2.89 X:2 [G] sugar:SC 55.67
A:109 [ASN] Y:21 [C] 4.09 X:1 [GTP] 55.67
A:137 [GLN] X:6 [G] 4.91 Y:16 [C] 65.05
A:138 [LYS] X:6 [G] 3.2 Y:16 [C] 91.52
A:138 [LYS] X:7 [U] 3.18 Y:15 [A] 91.52
A:139 [GLU] X:5 [C] 3.37 Y:17 [G] 79.33
A:139 [GLU] X:6 [G] 3.01 Y:16 [C] 79.33
A:140 [ALA] X:5 [C] 3.43 Y:17 [G] 38.34
A:140 [ALA] X:6 [G] 4.23 Y:16 [C] 38.34
A:141 [VAL] X:5 [C] 4.67 Y:17 [G] 73.21
A:144 [LYS] X:4 [A] 4.7 Y:18 [U] 73.8
A:144 [LYS] X:5 [C] 4.31 Y:17 [G] 73.8
A:256 [GLN] X:9 [C] 4.71 Y:13 [G] 85.42
A:256 [GLN] Y:14 [U] 4.72 X:8 [A] 85.42
A:256 [GLN] Y:15 [A] 3.55 X:7 [U] sugar:SC 85.42
A:257 [VAL] X:9 [C] 4.25 Y:13 [G] 5.76
A:257 [VAL] X:10 [C] 3.74 Y:12 [GTP] 5.76
A:259 [GLU] Y:14 [U] 3.99 X:8 [A] 94.56
A:259 [GLU] Y:15 [A] 4.3 X:7 [U] 94.56
A:260 [GLN] X:9 [C] 4.31 Y:13 [G] 95.03
A:260 [GLN] X:10 [C] 2.97 Y:12 [GTP] base:SC 95.03
A:260 [GLN] Y:12 [GTP] 4.09 X:10 [C] 95.03
A:260 [GLN] Y:13 [G] 3.14 X:9 [C] base:SC 95.03
A:260 [GLN] Y:14 [U] 3.37 X:8 [A] base/AA stacks 95.03
A:261 [ARG] X:10 [C] 2.82 Y:12 [GTP] sugar:SC 64.32
A:261 [ARG] X:11 [C] 4.14 64.32
A:263 [VAL] Y:14 [U] 3.52 X:8 [A] 77.97
A:263 [VAL] Y:15 [A] 3.79 X:7 [U] 77.97
A:264 [GLU] Y:12 [GTP] 4.81 X:10 [C] 66.03
A:264 [GLU] Y:13 [G] 2.44 X:9 [C] sugar:SC 66.03
A:264 [GLU] Y:14 [U] 4.22 X:8 [A] 66.03
A:267 [ASN] Y:13 [G] 4.16 X:9 [C] 60.89
A:267 [ASN] Y:14 [U] 2.84 X:8 [A] 60.89
A:285 [ARG] Y:14 [U] 4.91 X:8 [A] 94.85
A:285 [ARG] Y:15 [A] 2.81 X:7 [U] 94.85
A:285 [ARG] Y:16 [C] 3.6 X:6 [G] 94.85
A:373 [LYS] Y:15 [A] 4.06 X:7 [U] 19.51
A:373 [LYS] Y:16 [C] 3.61 X:6 [G] 19.51
A:373 [LYS] Y:17 [G] 3.24 X:5 [C] 19.51
A:374 [THR] Y:16 [C] 3.35 X:6 [G] 87.84
A:374 [THR] Y:17 [G] 3.58 X:5 [C] 87.84
A:375 [ARG] Y:16 [C] 4.8 X:6 [G] 82.14
A:375 [ARG] Y:17 [G] 2.98 X:5 [C] 82.14
A:375 [ARG] Y:18 [U] 2.8 X:4 [A] 82.14
A:376 [GLN] Y:17 [G] 4.5 X:5 [C] 67.11
A:402 [THR] Y:18 [U] 3.61 X:4 [A] 86.92
A:403 [GLY] Y:18 [U] 2.6 X:4 [A] 78.58
A:403 [GLY] Y:19 [A] 3.57 X:3 [U] 78.58
A:404 [SER] Y:18 [U] 4.45 X:4 [A] 74.11
A:404 [SER] Y:19 [A] 2.84 X:3 [U] 74.11
A:404 [SER] Y:20 [C] 4.75 X:2 [G] 74.11
A:405 [GLY] Y:18 [U] 3.38 X:4 [A] 52.59
A:405 [GLY] Y:19 [A] 4.73 X:3 [U] 52.59
A:406 [HIS] X:1 [GTP] 2.83 Y:21 [C] base/AA stacks 47.37
A:406 [HIS] X:2 [G] 2.91 Y:20 [C] base:SC 47.37
A:406 [HIS] X:3 [U] 4.88 Y:19 [A] 47.37
A:406 [HIS] Y:19 [A] 4.91 X:3 [U] 47.37
A:406 [HIS] Y:20 [C] 4.71 X:2 [G] 47.37
A:407 [SER] X:1 [GTP] 3.4 Y:21 [C] 76.3
A:407 [SER] Y:17 [G] 4.85 X:5 [C] 76.3
A:408 [ASN] X:1 [GTP] 2.77 Y:21 [C] 53.09
A:409 [GLN] X:1 [GTP] 4.45 Y:21 [C] 67.95
A:409 [GLN] Y:16 [C] 2.97 X:6 [G] 67.95
A:418 [GLN] Y:19 [A] 4.23 X:3 [U] 91.7
A:436 [THR] Y:17 [G] 3.54 X:5 [C] 98.68
A:436 [THR] Y:18 [U] 2.51 X:4 [A] 98.68
A:437 [SER] Y:17 [G] 2.88 X:5 [C] sugar:SC 88.55
A:437 [SER] Y:18 [U] 4.77 X:4 [A] 88.55
A:438 [VAL] Y:17 [G] 4.93 X:5 [C] 95.03
A:438 [VAL] Y:18 [U] 3.74 X:4 [A] 95.03
A:438 [VAL] Y:19 [A] 4.3 X:3 [U] 95.03
A:457 [MET] X:7 [U] 4.57 Y:15 [A] 88.7
A:457 [MET] X:8 [A] 3.58 Y:14 [U] 88.7
A:457 [MET] X:9 [C] 4.54 Y:13 [G] 88.7
A:458 [THR] X:7 [U] 4.45 Y:15 [A] 66.33
A:458 [THR] X:8 [A] 4.27 Y:14 [U] 66.33
A:459 [ASN] X:7 [U] 4.01 Y:15 [A] 79.12
A:459 [ASN] X:8 [A] 3.62 Y:14 [U] 79.12
A:486 [ARG] X:9 [C] 3.06 Y:13 [G] 50.15
A:486 [ARG] X:10 [C] 3.3 Y:12 [GTP] 50.15
A:490 [ARG] X:8 [A] 2.77 Y:14 [U] 69.1
A:490 [ARG] X:9 [C] 3.8 Y:13 [G] 69.1
A:534 [LYS] Y:12 [GTP] 4.93 X:10 [C] 65.25
A:537 [ARG] Y:12 [GTP] 4.71 X:10 [C] 14.17
A:571 [GLU] Y:21 [C] 2.69 X:1 [GTP] sugar:SC 86.82
A:572 [ALA] X:3 [U] 4.54 Y:19 [A] 21.89
A:573 [MET] X:2 [G] 3.47 Y:20 [C] 58.63
A:573 [MET] X:3 [U] 3.16 Y:19 [A] 58.63
A:573 [MET] Y:20 [C] 4.19 X:2 [G] 58.63
A:573 [MET] Y:21 [C] 3.5 X:1 [GTP] 58.63
A:574 [HIS] X:1 [GTP] 3.91 Y:21 [C] 94.13
A:574 [HIS] X:2 [G] 2.71 Y:20 [C] sugar:SC 94.13
A:574 [HIS] X:3 [U] 4.66 Y:19 [A] 94.13
A:574 [HIS] Y:21 [C] 2.9 X:1 [GTP] sugar:SC 94.13
A:575 [HIS] X:2 [G] 4.74 Y:20 [C] 88.64
A:575 [HIS] X:3 [U] 4.1 Y:19 [A] 88.64
A:595 [PHE] X:1 [GTP] 3.2 Y:21 [C] base/AA stacks 27.0
A:597 [ARG] Y:21 [C] 2.97 X:1 [GTP] 81.17
A:599 [PHE] X:1 [GTP] 4.74 Y:21 [C] 81.06
A:599 [PHE] Y:21 [C] 3.46 X:1 [GTP] base/AA stacks 81.06
A:602 [TRP] X:1 [GTP] 3.78 Y:21 [C] 86.29
A:602 [TRP] Y:21 [C] 3.6 X:1 [GTP] 86.29
A:607 [ARG] X:1 [GTP] 3.43 Y:21 [C] 48.1
A:616 [GLU] X:1 [GTP] 4.15 Y:21 [C] 2.49
A:618 [GLY] X:1 [GTP] 4.49 Y:21 [C] 83.21
A:619 [MET] X:1 [GTP] 3.37 Y:21 [C] 72.69
A:619 [MET] X:2 [G] 3.61 Y:20 [C] 72.69
A:630 [ILE] X:2 [G] 3.92 Y:20 [C] 63.77
A:631 [LEU] X:2 [G] 4.0 Y:20 [C] 56.9
A:631 [LEU] X:3 [U] 4.02 Y:19 [A] 56.9
A:632 [SER] X:1 [GTP] 4.88 Y:21 [C] 21.71
A:632 [SER] X:2 [G] 2.65 Y:20 [C] 21.71
A:632 [SER] X:3 [U] 3.72 Y:19 [A] 21.71
A:633 [ILE] X:2 [G] 4.94 Y:20 [C] 72.51
A:633 [ILE] X:3 [U] 3.2 Y:19 [A] 72.51
A:634 [LYS] X:1 [GTP] 2.75 Y:21 [C] 71.92
A:634 [LYS] X:2 [G] 3.32 Y:20 [C] 71.92
A:635 [ASN] X:2 [G] 4.63 Y:20 [C] 66.24
A:645 [LYS] Y:12 [GTP] 4.58 X:10 [C] 61.86
A:645 [LYS] Y:13 [G] 3.48 X:9 [C] 61.86
A:648 [LYS] X:4 [A] 4.36 Y:18 [U] 77.98
A:648 [LYS] Y:14 [U] 3.1 X:8 [A] 77.98
A:648 [LYS] Y:15 [A] 2.88 X:7 [U] 77.98
A:649 [LYS] X:4 [A] 3.8 Y:18 [U] 65.64
A:649 [LYS] X:5 [C] 2.44 Y:17 [G] 65.64
A:650 [TRP] X:2 [G] 4.62 Y:20 [C] 72.19
A:650 [TRP] X:3 [U] 2.75 Y:19 [A] 72.19
A:650 [TRP] X:4 [A] 2.99 Y:18 [U] 72.19
A:651 [SER] X:4 [A] 3.38 Y:18 [U] 68.22
A:651 [SER] X:5 [C] 4.81 Y:17 [G] 68.22

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 5JB2_A_X,Y A: Lgp2, Gallus gallus (genetically engineered) X: Synthetic construct (synthetic) Y: Synthetic construct (synthetic) G0YYQ5 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like ✘

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3I62_A_B 5JB2_A_X,Y 0.80 0.61 2.0 0.1 P-loop containing nucleoside triphosphate hydrolases compare
2YKG_A_C,D 5JB2_A_X,Y 0.60 0.72 2.5 0.33 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
5JAJ_A_X,Y 5JB2_A_X,Y 0.97 1.0 0.28 0.9 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
3OG8_A_C,D 5JB2_A_X,Y 0.51 0.75 1.43 0.2 Mss4-like compare
3I61_A_B 5JB2_A_X,Y 0.77 0.61 2.03 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3ZD7_A_C,D 5JB2_A_X,Y 0.39 0.73 3.99 0.31 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
5JB2_A_X,Y 5JBG_A_X 0.92 0.99 0.88 0.62 P-loop containing nucleoside triphosphate hydrolases & Helical bundle in Hef helicase & Mss4-like compare
5JB2_A_X,Y 5ZC9_A_B 0.66 0.77 2.13 0.2 P-loop containing nucleoside triphosphate hydrolases compare
3I5X_A_B 5JB2_A_X,Y 0.79 0.61 2.02 0.1 P-loop containing nucleoside triphosphate hydrolases compare
3I5Y_A_B 5JB2_A_X,Y 0.80 0.61 1.92 0.1 P-loop containing nucleoside triphosphate hydrolases compare