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All interfaces > All interologs > Interface groups > group135 > 5ZC9_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5ZC9_A
5ZC9_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:108 [PRO] B:6 [G] 2.66 sugar:BB 87.6
A:108 [PRO] B:7 [A] 3.29 87.6
A:109 [THR] B:6 [G] 3.77 87.69
A:109 [THR] B:7 [A] 3.46 87.69
A:110 [ARG] B:6 [G] 4.86 76.65
A:110 [ARG] B:7 [A] 2.96 76.65
A:110 [ARG] B:8 [G] 2.82 76.65
A:110 [ARG] B:9 [A] 4.54 76.65
A:111 [GLU] B:7 [A] 4.52 89.94
A:135 [ILE] B:8 [G] 4.04 72.42
A:136 [GLY] B:8 [G] 3.06 71.57
A:136 [GLY] B:9 [A] 3.93 71.57
A:137 [GLY] B:8 [G] 4.12 73.25
A:137 [GLY] B:9 [A] 2.92 73.25
A:138 [THR] B:9 [A] 4.27 68.75
A:140 [VAL] B:9 [A] 3.35 52.99
A:140 [VAL] B:10 [G] 4.21 52.99
A:158 [THR] B:7 [A] 3.41 99.0
A:158 [THR] B:8 [G] 2.63 99.0
A:159 [PRO] B:7 [A] 3.56 94.46
A:159 [PRO] B:8 [G] 4.64 94.46
A:160 [GLY] B:7 [A] 3.19 sugar:BB 84.81
A:160 [GLY] B:8 [G] 3.04 84.81
A:161 [ARG] B:7 [A] 4.42 87.62
A:161 [ARG] B:8 [G] 2.88 sugar:SC 87.62
A:161 [ARG] B:9 [A] 2.9 87.62
A:164 [ASP] B:8 [G] 2.75 sugar:SC 67.24
A:164 [ASP] B:9 [A] 3.46 67.24
A:168 [ARG] B:8 [G] 3.99 30.55
A:168 [ARG] B:9 [A] 3.09 sugar:SC, sugar:SC 30.55
A:186 [GLU] B:5 [A] 3.69 58.43
A:190 [ARG] B:1 [A] 4.72 43.74
A:190 [ARG] B:2 [G] 2.85 base/AA stacks 43.74
A:190 [ARG] B:3 [A] 3.0 base/AA stacks 43.74
A:190 [ARG] B:4 [G] 2.88 base:SC, base:SC 43.74
A:190 [ARG] B:5 [A] 3.74 43.74
A:191 [GLY] B:5 [A] 4.77 79.19
A:191 [GLY] B:6 [G] 2.98 79.19
A:192 [PHE] B:5 [A] 4.96 65.33
A:192 [PHE] B:6 [G] 3.49 65.33
A:192 [PHE] B:7 [A] 3.33 65.33
A:195 [GLN] B:6 [G] 4.05 53.18
A:195 [GLN] B:7 [A] 2.7 base:SC, sugar:SC 53.18
A:280 [ASN] B:4 [G] 2.72 sugar:BB 81.65
A:280 [ASN] B:5 [A] 3.35 81.65
A:281 [THR] B:4 [G] 3.78 67.78
A:281 [THR] B:5 [A] 3.41 67.78
A:282 [ARG] B:4 [G] 4.73 36.36
A:282 [ARG] B:5 [A] 2.74 36.36
A:282 [ARG] B:6 [G] 2.74 36.36
A:283 [ARG] B:5 [A] 4.56 52.35
A:303 [HIS] B:6 [G] 3.46 84.26
A:304 [GLY] B:6 [G] 2.69 68.45
A:304 [GLY] B:7 [A] 4.78 68.45
A:305 [ASP] B:6 [G] 5.0 35.11
A:311 [ARG] B:6 [G] 4.43 90.64
A:311 [ARG] B:7 [A] 2.8 90.64
A:329 [THR] B:5 [A] 3.07 97.21
A:329 [THR] B:6 [G] 2.56 97.21
A:330 [ASP] B:5 [A] 3.35 83.0
A:331 [LEU] B:5 [A] 3.56 61.72
A:331 [LEU] B:6 [G] 3.52 61.72
A:331 [LEU] B:7 [A] 4.17 61.72
A:351 [THR] B:4 [G] 4.82 29.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group135 5ZC9_A_B A: Eukaryotic initiation factor 4a-i, Homo sapiens (genetically engineered) B: Synthetic construct (synthetic) P60842 P-loop containing nucleoside triphosphate hydrolases ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5JAJ_A_X,Y 5ZC9_A_B 0.66 0.76 2.09 0.2 P-loop containing nucleoside triphosphate hydrolases compare
5ZC9_A_B 7DCO_x_G 0.53 0.63 4.15 0.0 P-loop containing nucleoside triphosphate hydrolases compare
5JB2_A_X,Y 5ZC9_A_B 0.66 0.77 2.13 0.2 P-loop containing nucleoside triphosphate hydrolases compare
5JBG_A_X 5ZC9_A_B 0.64 0.76 2.44 0.1 P-loop containing nucleoside triphosphate hydrolases compare