Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
5ZC9_A
|
5ZC9_B
|
7DCO_x
|
7DCO_G
|
Conserved?
|
---|---|---|---|---|
A:161 [ARG] | B:8 [G] | x:326 [MET] | G:535 [U] | ✔ |
A:135 [ILE] | B:8 [G] | x:306 [ILE] | G:535 [U] | ✔ |
A:329 [THR] | B:5 [A] | x:501 [THR] | G:532 [U] | ✔ |
A:108 [PRO] | B:6 [G] | x:278 [PRO] | G:533 [U] | ✔ |
A:108 [PRO] | B:7 [A] | x:278 [PRO] | G:534 [U] | ✔ |
A:330 [ASP] | B:5 [A] | x:502 [ASN] | G:532 [U] | ✔ |
A:331 [LEU] | B:5 [A] | x:503 [ILE] | G:532 [U] | ✔ |
A:331 [LEU] | B:6 [G] | x:503 [ILE] | G:533 [U] | ✔ |
A:304 [GLY] | B:6 [G] | x:476 [ALA] | G:533 [U] | ✔ |
A:158 [THR] | B:7 [A] | x:323 [THR] | G:534 [U] | ✔ |
A:158 [THR] | B:8 [G] | x:323 [THR] | G:535 [U] | ✔ |
A:159 [PRO] | B:7 [A] | x:324 [ASP] | G:534 [U] | ✔ |
A:111 [GLU] | B:7 [A] | x:281 [VAL] | G:534 [U] | ✔ |
A:110 [ARG] | B:6 [G] | x:280 [ARG] | G:533 [U] | ✔ |
A:110 [ARG] | B:7 [A] | x:280 [ARG] | G:534 [U] | ✔ |
A:110 [ARG] | B:8 [G] | x:280 [ARG] | G:535 [U] | ✔ |
A:164 [ASP] | B:8 [G] | x:329 [ARG] | G:535 [U] | ✔ |
A:160 [GLY] | B:7 [A] | x:325 [GLY] | G:534 [U] | ✔ |
A:160 [GLY] | B:8 [G] | x:325 [GLY] | G:535 [U] | ✔ |
A:136 [GLY] | B:8 [G] | x:307 [ARG] | G:535 [U] | ✔ |
A:280 [ASN] | B:4 [G] | x:443 [THR] | G:531 [U] | ✔ |
A:282 [ARG] | B:4 [G] | x:445 [GLN] | G:531 [U] | ✔ |
A:281 [THR] | B:4 [G] | x:444 [GLY] | G:531 [U] | ✔ |
A:109 [THR] | B:6 [G] | x:279 [ARG] | G:533 [U] | ✔ |
A:109 [THR] | B:7 [A] | x:279 [ARG] | G:534 [U] | ✔ |
A:161 [ARG] | B:7 [A] | x:326 [MET] | G:534 [U] | ❌ 7DCO_x_G |
A:329 [THR] | B:6 [G] | x:501 [THR] | G:533 [U] | ❌ 7DCO_x_G |
A:303 [HIS] | B:6 [G] | x:475 [TYR] | G:533 [U] | ❌ 7DCO_x_G |
A:191 [GLY] | B:5 [A] | x:354 [ALA] | G:532 [U] | ❌ 7DCO_x_G |
A:191 [GLY] | B:6 [G] | x:354 [ALA] | G:533 [U] | ❌ 7DCO_x_G |
A:331 [LEU] | B:7 [A] | x:503 [ILE] | G:534 [U] | ❌ 7DCO_x_G |
A:304 [GLY] | B:7 [A] | x:476 [ALA] | G:534 [U] | ❌ 7DCO_x_G |
A:305 [ASP] | B:6 [G] | x:477 [ASN] | G:533 [U] | ❌ 7DCO_x_G |
A:159 [PRO] | B:8 [G] | x:324 [ASP] | G:535 [U] | ❌ 7DCO_x_G |
A:283 [ARG] | B:5 [A] | x:446 [GLU] | G:532 [U] | ❌ 7DCO_x_G |
A:280 [ASN] | B:5 [A] | x:443 [THR] | G:532 [U] | ❌ 7DCO_x_G |
A:282 [ARG] | B:5 [A] | x:445 [GLN] | G:532 [U] | ❌ 7DCO_x_G |
A:282 [ARG] | B:6 [G] | x:445 [GLN] | G:533 [U] | ❌ 7DCO_x_G |
A:281 [THR] | B:5 [A] | x:444 [GLY] | G:532 [U] | ❌ 7DCO_x_G |
A:109 [THR] | B:5 [A] | x:279 [ARG] | G:532 [U] | ❌ 5ZC9_A_B |
A:191 [GLY] | B:7 [A] | x:354 [ALA] | G:534 [U] | ❌ 5ZC9_A_B |
A:283 [ARG] | B:4 [G] | x:446 [GLU] | G:531 [U] | ❌ 5ZC9_A_B |
A:303 [HIS] | B:5 [A] | x:475 [TYR] | G:532 [U] | ❌ 5ZC9_A_B |
A:304 [GLY] | B:5 [A] | x:476 [ALA] | G:532 [U] | ❌ 5ZC9_A_B |
A:305 [ASP] | B:5 [A] | x:477 [ASN] | G:532 [U] | ❌ 5ZC9_A_B |
A:329 [THR] | B:4 [G] | x:501 [THR] | G:531 [U] | ❌ 5ZC9_A_B |
A:330 [ASP] | B:4 [G] | x:502 [ASN] | G:531 [U] | ❌ 5ZC9_A_B |
A:186 [GLU] | B:5 [A] | x:350 [GLU] | G:532 [U] | ❌ 7DCO_x:350 no longer at interface |
A:168 [ARG] | B:8 [G] | x:333 [THR] | G:535 [U] | ❌ 7DCO_x:333 no longer at interface |
A:192 [PHE] | B:5 [A] | x:355 [THR] | G:532 [U] | ❌ 7DCO_x:355 no longer at interface |
A:192 [PHE] | B:6 [G] | x:355 [THR] | G:533 [U] | ❌ 7DCO_x:355 no longer at interface |
A:192 [PHE] | B:7 [A] | x:355 [THR] | G:534 [U] | ❌ 7DCO_x:355 no longer at interface |
A:311 [ARG] | B:6 [G] | x:481 [GLU] | G:533 [U] | ❌ 7DCO_x:481 no longer at interface |
A:311 [ARG] | B:7 [A] | x:481 [GLU] | G:534 [U] | ❌ 7DCO_x:481 no longer at interface |
A:351 [THR] | B:4 [G] | x:541 [CYS] | G:531 [U] | ❌ 7DCO_x:541 no longer at interface |
A:190 [ARG] | B:4 [G] | x:353 [LEU] | G:531 [U] | ❌ 7DCO_x:353 no longer at interface |
A:190 [ARG] | B:5 [A] | x:353 [LEU] | G:532 [U] | ❌ 7DCO_x:353 no longer at interface |
A:195 [GLN] | B:6 [G] | x:358 [LEU] | G:533 [U] | ❌ 7DCO_x:358 no longer at interface |
A:195 [GLN] | B:7 [A] | x:358 [LEU] | G:534 [U] | ❌ 7DCO_x:358 no longer at interface |
A:189 [SER] | B:6 [G] | x:352 [THR] | G:533 [U] | ❌ 5ZC9_A:189 no longer at interface |
A:335 [GLY] | B:6 [G] | x:507 [SER] | G:533 [U] | ❌ 5ZC9_A:335 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
P-loop containing nucleoside triphosphate hydrolases | 0.63 | 4.15 | 0.00 | 0.64 | 0.27 | 0.69 | 0.56 | 0.53 | 0.40 | 0.09 | 0.39 |
Other pairs involving 5ZC9_A_B or 7DCO_x_G
Total number of entries: 4
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
5JAJ_A_X,Y | 5ZC9_A_B | 0.66 | 0.76 | 2.09 | 0.2 | P-loop containing nucleoside triphosphate hydrolases | compare | |
5ZC9_A_B | 7DCO_x_G | 0.53 | 0.63 | 4.15 | 0.0 | P-loop containing nucleoside triphosphate hydrolases | compare | |
5JB2_A_X,Y | 5ZC9_A_B | 0.66 | 0.77 | 2.13 | 0.2 | P-loop containing nucleoside triphosphate hydrolases | compare | |
5JBG_A_X | 5ZC9_A_B | 0.64 | 0.76 | 2.44 | 0.1 | P-loop containing nucleoside triphosphate hydrolases | compare |