Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
7DCO_x
|
7DCO_G
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
x:278 [PRO] | G:533 [U] | 4.39 | 95.56 | |||
x:278 [PRO] | G:534 [U] | 3.3 | 95.56 | |||
x:279 [ARG] | G:532 [U] | 3.86 | 95.3 | |||
x:279 [ARG] | G:533 [U] | 3.49 | 95.3 | |||
x:279 [ARG] | G:534 [U] | 3.72 | 95.3 | |||
x:280 [ARG] | G:533 [U] | 4.76 | 94.37 | |||
x:280 [ARG] | G:534 [U] | 2.75 | 94.37 | |||
x:280 [ARG] | G:535 [U] | 3.61 | 94.37 | |||
x:281 [VAL] | G:534 [U] | 4.16 | 75.18 | |||
x:306 [ILE] | G:535 [U] | 4.15 | 81.7 | |||
x:307 [ARG] | G:535 [U] | 3.23 | 91.57 | |||
x:307 [ARG] | G:536 [U] | 3.51 | 91.57 | |||
x:323 [THR] | G:534 [U] | 3.51 | 99.0 | |||
x:323 [THR] | G:535 [U] | 2.6 | 99.0 | |||
x:324 [ASP] | G:534 [U] | 3.43 | sugar:SC | 86.38 | ||
x:325 [GLY] | G:534 [U] | 3.42 | 90.61 | |||
x:325 [GLY] | G:535 [U] | 3.81 | 90.61 | |||
x:326 [MET] | G:535 [U] | 3.64 | 71.51 | |||
x:326 [MET] | G:536 [U] | 3.71 | 71.51 | |||
x:329 [ARG] | G:535 [U] | 3.02 | 77.47 | |||
x:329 [ARG] | G:536 [U] | 3.23 | 77.47 | |||
x:352 [THR] | G:533 [U] | 4.92 | 84.52 | |||
x:354 [ALA] | G:534 [U] | 4.82 | 65.16 | |||
x:443 [THR] | G:531 [U] | 4.48 | 82.9 | |||
x:444 [GLY] | G:531 [U] | 3.69 | 86.61 | |||
x:445 [GLN] | G:530 [U] | 4.95 | 55.82 | |||
x:445 [GLN] | G:531 [U] | 2.77 | 55.82 | |||
x:446 [GLU] | G:529 [U] | 4.3 | 56.11 | |||
x:446 [GLU] | G:530 [U] | 4.11 | 56.11 | |||
x:446 [GLU] | G:531 [U] | 4.76 | 56.11 | |||
x:475 [TYR] | G:532 [U] | 3.28 | 83.31 | |||
x:476 [ALA] | G:532 [U] | 2.88 | 82.87 | |||
x:476 [ALA] | G:533 [U] | 4.05 | 82.87 | |||
x:477 [ASN] | G:530 [U] | 2.85 | sugar:SC | 60.77 | ||
x:477 [ASN] | G:532 [U] | 4.78 | 60.77 | |||
x:501 [THR] | G:531 [U] | 3.46 | 99.0 | |||
x:501 [THR] | G:532 [U] | 2.93 | 99.0 | |||
x:502 [ASN] | G:531 [U] | 2.64 | sugar:SC | 97.46 | ||
x:502 [ASN] | G:532 [U] | 4.46 | 97.46 | |||
x:503 [ILE] | G:532 [U] | 4.06 | 88.83 | |||
x:503 [ILE] | G:533 [U] | 3.76 | 88.83 | |||
x:507 [SER] | G:533 [U] | 3.2 | 95.82 | |||
x:523 [LYS] | G:531 [U] | 3.17 | 89.5 | |||
x:524 [GLU] | G:531 [U] | 4.45 | 44.17 | |||
x:525 [ASN] | G:531 [U] | 2.47 | 58.95 | |||
x:536 [LEU] | G:530 [U] | 4.4 | 86.09 | |||
x:536 [LEU] | G:531 [U] | 3.57 | 86.09 | |||
x:589 [ASN] | G:535 [U] | 4.35 | 65.07 | |||
x:646 [PRO] | G:535 [U] | 4.01 | 90.61 | |||
x:646 [PRO] | G:536 [U] | 4.03 | 90.61 | |||
x:647 [CYS] | G:535 [U] | 4.39 | 64.69 | |||
x:648 [GLU] | G:535 [U] | 4.38 | 62.04 | |||
x:679 [HIS] | G:535 [U] | 3.93 | 78.05 | |||
x:681 [THR] | G:530 [U] | 4.32 | 15.56 | |||
x:682 [PRO] | G:530 [U] | 3.58 | 42.36 | |||
x:688 [GLN] | G:529 [U] | 4.96 | 37.41 | |||
x:743 [GLN] | G:536 [U] | 2.86 | 80.84 | |||
x:810 [HIS] | G:529 [U] | 3.61 | 84.75 | |||
x:810 [HIS] | G:530 [U] | 3.56 | 84.75 | |||
x:811 [PRO] | G:528 [U] | 4.11 | 82.9 | |||
x:811 [PRO] | G:529 [U] | 3.41 | 82.9 | |||
x:812 [THR] | G:529 [U] | 3.99 | 74.47 | |||
x:816 [PHE] | G:528 [U] | 4.55 | 14.05 | |||
x:834 [GLN] | G:530 [U] | 3.48 | 45.62 | |||
x:836 [MET] | G:530 [U] | 3.74 | 25.19 | |||
x:838 [THR] | G:529 [U] | 4.8 | 77.71 | |||
x:838 [THR] | G:530 [U] | 2.41 | 77.71 | |||
x:839 [SER] | G:528 [U] | 4.52 | 70.02 | |||
x:839 [SER] | G:529 [U] | 2.89 | 70.02 | |||
x:839 [SER] | G:530 [U] | 4.99 | 70.02 | |||
x:842 [PHE] | G:528 [U] | 4.41 | 49.31 | |||
x:842 [PHE] | G:529 [U] | 4.01 | 49.31 | |||
x:842 [PHE] | G:530 [U] | 4.22 | 49.31 | |||
x:844 [ARG] | G:529 [U] | 4.78 | 62.26 | |||
x:844 [ARG] | G:530 [U] | 3.05 | sugar:SC | base/AA stacks | 62.26 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group135 | 7DCO_x_G | x: Pre-mRNA-splicing factor atp-dependent RNA helicase-like protein prp2, Saccharomyces cerevisiae (strain atcc 204508 / s288c) (natural) G: Pre-mRNA, Saccharomyces cerevisiae (natural) | P20095 | Nucleic acid-binding proteins & P-loop containing nucleoside triphosphate hydrolases & Sec63 N-terminal subdomain-like | ✘ |
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Interologs
Total number of interologs for this interface: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
5ZC9_A_B | 7DCO_x_G | 0.53 | 0.63 | 4.15 | 0.0 | P-loop containing nucleoside triphosphate hydrolases | compare |