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All interfaces > All interologs > Interface groups > group136 > 2PXD_A_B

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

2PXD_A
2PXD_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:26 [VAL] B:150 [G] 3.45 B:161 [A] 44.17
A:29 [GLU] B:149 [G] 4.83 B:162 [G] 47.16
A:30 [ALA] B:149 [G] 2.46 B:162 [G] base:BB 75.72
A:30 [ALA] B:150 [G] 2.78 B:161 [A] 75.72
A:31 [ILE] B:149 [G] 4.47 B:162 [G] 80.23
A:33 [ASN] B:148 [A] 2.78 B:163 [C] base:BB 46.26
A:33 [ASN] B:149 [G] 2.81 B:162 [G] sugar:SC 46.26
A:33 [ASN] B:163 [C] 3.31 B:148 [A] base:BB 46.26
A:33 [ASN] B:164 [A] 3.48 B:147 [C] 46.26
A:34 [SER] B:148 [A] 4.6 B:163 [C] 98.95
A:34 [SER] B:149 [G] 2.69 B:162 [G] base:SC 98.95
A:34 [SER] B:163 [C] 2.49 B:148 [A] base:SC, sugar:BB 98.95
A:34 [SER] B:164 [A] 3.44 B:147 [C] 98.95
A:35 [MSE] B:163 [C] 4.82 B:148 [A] 98.97
A:35 [MSE] B:164 [A] 2.62 B:147 [C] sugar:BB 98.97
A:36 [THR] B:140 [A] 3.64 95.66
A:36 [THR] B:164 [A] 3.39 B:147 [C] 95.66
A:36 [THR] B:165 [G] 4.3 B:146 [U] 95.66
A:37 [MSE] B:165 [G] 4.95 B:146 [U] 30.16
A:38 [LYS] B:139 [U] 2.81 B:169 [A] 38.95
A:38 [LYS] B:140 [A] 2.95 38.95
A:39 [GLU] B:140 [A] 4.42 99.0
A:40 [ARG] B:164 [A] 3.26 B:147 [C] 90.25
A:49 [SER] B:140 [A] 2.75 base:SC 75.01
A:49 [SER] B:141 [C] 3.82 75.01
A:50 [ARG] B:140 [A] 3.01 base/AA stacks 97.72
A:53 [ARG] B:140 [A] 3.07 base:SC 98.67
A:53 [ARG] B:141 [C] 3.33 98.67
A:53 [ARG] B:163 [C] 3.28 B:148 [A] sugar:SC 98.67
A:53 [ARG] B:164 [A] 3.95 B:147 [C] 98.67
A:54 [ILE] B:163 [C] 4.66 B:148 [A] 92.43
A:56 [ALA] B:150 [G] 4.15 B:161 [A] 45.53
A:56 [ALA] B:162 [G] 4.82 B:149 [G] 45.53
A:57 [GLY] B:149 [G] 2.94 B:162 [G] base:BB 93.74
A:57 [GLY] B:150 [G] 4.04 B:161 [A] 93.74
A:57 [GLY] B:162 [G] 4.77 B:149 [G] 93.74
A:57 [GLY] B:163 [C] 3.41 B:148 [A] 93.74
A:58 [SER] B:149 [G] 3.14 B:162 [G] 88.48
A:58 [SER] B:150 [G] 2.97 B:161 [A] 88.48
A:58 [SER] B:151 [U] 4.07 B:160 [A] 88.48
A:59 [GLY] B:150 [G] 3.49 B:161 [A] 97.9
A:59 [GLY] B:151 [U] 3.01 B:160 [A] sugar:BB 97.9
A:60 [MSE] B:150 [G] 4.1 B:161 [A] 55.45
A:60 [MSE] B:151 [U] 3.92 B:160 [A] 55.45

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group136 2PXD_A_B A: Signal recognition particle protein, Escherichia coli (genetically engineered) B: 4.5 s RNA P0AGD7 tri-helical ✘

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1HQ1_A_B 2PXD_A_B 0.96 0.97 0.39 0.81 tri-helical compare
2PXB_A_B 2PXD_A_B 0.98 0.99 0.23 1.0 tri-helical compare
2PXD_A_B 2PXF_A_B 1.00 0.99 0.26 1.0 tri-helical compare
2PXD_A_B 2PXT_A_B 0.99 0.99 0.25 1.0 tri-helical compare
2PXD_A_B 2PXQ_A_B 0.99 0.99 0.33 1.0 tri-helical compare
2PXD_A_B 2PXL_A_B 1.00 0.97 0.29 1.0 tri-helical compare
2PXD_A_B 2PXU_A_B 0.99 0.99 0.25 1.0 tri-helical compare
2PXD_A_B 2V3C_C_M 0.95 0.86 0.89 0.57 tri-helical compare
2PXD_A_B 2PXE_A_B 0.99 0.97 0.35 1.0 tri-helical compare
2PXD_A_B 2PXP_A_B 1.00 0.99 0.3 1.0 tri-helical compare
2PXD_A_B 2PXV_A_B 0.99 0.98 0.3 1.0 tri-helical compare