RNAprotDB

All interfaces > All interologs > Interface groups > group136 > 2PXQ_A_B

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

2PXQ_A
2PXQ_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:26 [VAL] B:149 [G] 4.73 B:162 [G] 44.17
A:26 [VAL] B:150 [G] 4.14 B:161 [A] 44.17
A:29 [GLU] B:149 [G] 4.11 B:162 [G] 47.16
A:30 [ALA] B:149 [G] 2.48 B:162 [G] base:BB 75.72
A:30 [ALA] B:150 [G] 3.12 B:161 [A] 75.72
A:31 [ILE] B:149 [G] 4.57 B:162 [G] 80.23
A:33 [ASN] B:148 [A] 3.17 B:163 [C] base:BB base/AA stacks 46.26
A:33 [ASN] B:149 [G] 2.94 B:162 [G] sugar:SC 46.26
A:33 [ASN] B:163 [C] 3.67 B:148 [A] 46.26
A:33 [ASN] B:164 [A] 3.44 B:147 [C] 46.26
A:34 [SER] B:148 [A] 4.61 B:163 [C] 98.95
A:34 [SER] B:149 [G] 2.49 B:162 [G] base:SC 98.95
A:34 [SER] B:163 [C] 2.54 B:148 [A] base:SC, sugar:BB 98.95
A:34 [SER] B:164 [A] 3.1 B:147 [C] 98.95
A:35 [MSE] B:163 [C] 4.71 B:148 [A] 98.97
A:35 [MSE] B:164 [A] 2.55 B:147 [C] sugar:BB 98.97
A:36 [THR] B:140 [A] 3.75 95.66
A:36 [THR] B:164 [A] 4.07 B:147 [C] 95.66
A:36 [THR] B:165 [G] 4.74 B:146 [U] 95.66
A:37 [MSE] B:165 [G] 4.88 B:146 [U] 30.16
A:38 [LYS] B:139 [U] 2.7 B:169 [A] 38.95
A:38 [LYS] B:140 [A] 2.9 38.95
A:39 [GLU] B:140 [A] 4.73 99.0
A:40 [ARG] B:164 [A] 3.99 B:147 [C] 90.25
A:49 [SER] B:140 [A] 2.5 base:SC, base:SC 75.01
A:49 [SER] B:141 [C] 3.65 75.01
A:50 [ARG] B:140 [A] 3.11 base/AA stacks 97.72
A:52 [ARG] B:141 [C] 5.0 25.0
A:53 [ARG] B:140 [A] 3.07 base:SC 98.67
A:53 [ARG] B:141 [C] 3.2 98.67
A:53 [ARG] B:163 [C] 3.46 B:148 [A] sugar:SC 98.67
A:53 [ARG] B:164 [A] 4.12 B:147 [C] 98.67
A:54 [ILE] B:163 [C] 4.8 B:148 [A] 92.43
A:56 [ALA] B:150 [G] 4.16 B:161 [A] 45.53
A:56 [ALA] B:162 [G] 4.23 B:149 [G] 45.53
A:56 [ALA] B:163 [C] 4.9 B:148 [A] 45.53
A:57 [GLY] B:149 [G] 3.13 B:162 [G] base:BB 93.74
A:57 [GLY] B:150 [G] 3.89 B:161 [A] 93.74
A:57 [GLY] B:162 [G] 4.23 B:149 [G] 93.74
A:57 [GLY] B:163 [C] 3.25 B:148 [A] 93.74
A:58 [SER] B:149 [G] 2.94 B:162 [G] 88.48
A:58 [SER] B:150 [G] 3.23 B:161 [A] 88.48
A:58 [SER] B:151 [U] 4.32 B:160 [A] 88.48
A:59 [GLY] B:150 [G] 3.79 B:161 [A] 97.9
A:59 [GLY] B:151 [U] 3.09 B:160 [A] sugar:BB 97.9
A:60 [MSE] B:150 [G] 4.1 B:161 [A] 55.45
A:60 [MSE] B:151 [U] 3.35 B:160 [A] 55.45

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group136 2PXQ_A_B A: Signal recognition particle protein, Escherichia coli (genetically engineered) B: 4.5 s RNA P0AGD7 tri-helical ✘

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1HQ1_A_B 2PXQ_A_B 0.95 0.97 0.43 0.81 tri-helical compare
2PXK_A_B 2PXQ_A_B 0.99 0.99 0.3 1.0 tri-helical compare
2PXP_A_B 2PXQ_A_B 0.99 0.99 0.3 1.0 tri-helical compare
2PXF_A_B 2PXQ_A_B 0.99 0.99 0.31 1.0 tri-helical compare
2PXQ_A_B 2PXV_A_B 0.98 0.98 0.27 0.95 tri-helical compare
2PXQ_A_B 2PXT_A_B 0.99 0.99 0.33 1.0 tri-helical compare
2PXQ_A_B 2PXU_A_B 0.99 0.98 0.34 1.0 tri-helical compare
2PXQ_A_B 2V3C_C_M 0.94 0.85 1.09 0.55 tri-helical compare
2PXL_A_B 2PXQ_A_B 0.99 0.97 0.38 1.0 tri-helical compare
2PXB_A_B 2PXQ_A_B 0.99 0.98 0.37 1.0 tri-helical compare
2PXD_A_B 2PXQ_A_B 0.99 0.99 0.33 1.0 tri-helical compare
2PXE_A_B 2PXQ_A_B 0.98 0.97 0.48 1.0 tri-helical compare