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All interfaces > All interologs > Interface groups > group136 > 2V3C_C_M

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2V3C_C
2V3C_M
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:17 [LYS] M:213 [G] 3.08 M:208 [C] 33.98
C:18 [ALA] M:204 [G] 4.09 M:217 [G] 7.11
C:19 [ALA] M:213 [G] 4.28 M:208 [C] 35.06
C:71 [LYS] M:203 [A] 2.82 M:218 [C] sugar:SC 49.19
C:71 [LYS] M:204 [G] 2.96 M:217 [G] 49.19
C:72 [GLU] M:203 [A] 3.28 M:218 [C] 64.03
C:122 [ARG] M:186 [A] 3.4 6.86
C:125 [GLN] M:232 [A] 3.78 M:146 [G] 62.23
C:126 [LYS] M:187 [C] 3.44 sugar:SC 53.39
C:126 [LYS] M:188 [C] 3.42 M:230 [G] 53.39
C:127 [ARG] M:188 [C] 4.45 M:230 [G] 59.56
C:127 [ARG] M:189 [U] 4.53 M:229 [A] 59.56
C:127 [ARG] M:231 [G] 4.61 59.56
C:128 [GLY] M:231 [G] 4.29 60.6
C:128 [GLY] M:232 [A] 3.6 M:146 [G] 60.6
C:129 [LEU] M:232 [A] 4.7 M:146 [G] 46.98
C:130 [LYS] M:232 [A] 3.26 M:146 [G] 56.68
C:130 [LYS] M:233 [C] 2.89 M:145 [G] 56.68
C:153 [LYS] M:183 [U] 4.95 M:147 [U] 38.61
C:274 [ILE] M:180 [C] 4.31 M:150 [G] 67.46
C:275 [GLY] M:181 [C] 4.72 M:149 [G] 96.75
C:276 [GLU] M:181 [C] 4.52 M:149 [G] 98.9
C:277 [GLY] M:182 [C] 4.65 M:148 [G] 58.0
C:279 [ASP] M:182 [C] 4.46 M:148 [G] 48.41
C:279 [ASP] M:184 [U] 4.62 48.41
C:280 [ASP] M:180 [C] 3.34 M:150 [G] 75.45
C:280 [ASP] M:181 [C] 3.75 M:149 [G] 75.45
C:292 [ARG] M:179 [C] 3.88 M:151 [G] 88.81
C:292 [ARG] M:180 [C] 4.09 M:150 [G] 88.81
C:296 [MET] M:201 [C] 4.61 M:220 [A] 69.03
C:296 [MET] M:202 [C] 3.22 M:219 [A] 69.03
C:297 [GLY] M:201 [C] 4.32 M:220 [A] 83.65
C:298 [ASP] M:221 [C] 3.7 M:200 [G] 95.22
C:298 [ASP] M:222 [G] 3.87 M:199 [C] 95.22
C:300 [GLU] M:221 [C] 3.5 M:200 [G] 38.08
C:300 [GLU] M:222 [G] 3.24 M:199 [C] 38.08
C:301 [SER] M:221 [C] 3.28 M:200 [G] sugar:SC 67.48
C:304 [GLU] M:220 [A] 3.0 M:201 [C] 80.44
C:304 [GLU] M:221 [C] 3.72 M:200 [G] 80.44
C:371 [LYS] M:204 [G] 3.31 M:217 [G] 51.6
C:371 [LYS] M:205 [G] 2.36 M:216 [A] 51.6
C:374 [LYS] M:204 [G] 4.73 M:217 [G] 35.49
C:375 [VAL] M:204 [G] 3.14 M:217 [G] base:BB 75.34
C:375 [VAL] M:205 [G] 3.46 M:216 [A] 75.34
C:376 [ILE] M:204 [G] 4.97 M:217 [G] 83.87
C:378 [SER] M:203 [A] 2.78 M:218 [C] base:BB, base:SC 53.82
C:378 [SER] M:204 [G] 4.23 M:217 [G] 53.82
C:378 [SER] M:218 [C] 4.48 M:203 [A] 53.82
C:378 [SER] M:219 [A] 4.05 M:202 [C] 53.82
C:379 [SER] M:203 [A] 4.8 M:218 [C] 98.27
C:379 [SER] M:204 [G] 3.77 M:217 [G] 98.27
C:379 [SER] M:218 [C] 2.7 M:203 [A] base:SC, sugar:BB, sugar:SC 98.27
C:379 [SER] M:219 [A] 3.44 M:202 [C] 98.27
C:380 [MET] M:219 [A] 2.25 M:202 [C] sugar:BB 98.57
C:380 [MET] M:220 [A] 4.67 M:201 [C] 98.57
C:381 [THR] M:195 [A] 3.63 97.9
C:381 [THR] M:219 [A] 3.81 M:202 [C] 97.9
C:381 [THR] M:220 [A] 3.69 M:201 [C] 97.9
C:382 [LYS] M:219 [A] 4.41 M:202 [C] 5.06
C:382 [LYS] M:220 [A] 3.27 M:201 [C] 5.06
C:382 [LYS] M:221 [C] 4.48 M:200 [G] 5.06
C:383 [GLU] M:195 [A] 3.99 45.89
C:384 [GLU] M:195 [A] 4.21 98.95
C:385 [ARG] M:219 [A] 2.39 M:202 [C] sugar:SC 85.86
C:385 [ARG] M:220 [A] 4.47 M:201 [C] 85.86
C:394 [SER] M:195 [A] 2.97 base:SC 91.49
C:394 [SER] M:196 [C] 4.28 91.49
C:395 [ARG] M:195 [A] 3.18 sugar:SC base/AA stacks 98.92
C:398 [ARG] M:195 [A] 3.21 base:SC 98.97
C:398 [ARG] M:196 [C] 3.28 98.97
C:398 [ARG] M:218 [C] 2.42 M:203 [A] sugar:SC 98.97
C:398 [ARG] M:219 [A] 4.23 M:202 [C] 98.97
C:399 [ILE] M:218 [C] 4.41 M:203 [A] 93.12
C:401 [ARG] M:205 [G] 3.91 M:216 [A] base:BB 53.83
C:402 [GLY] M:204 [G] 2.92 M:217 [G] base:BB 97.77
C:402 [GLY] M:205 [G] 3.38 M:216 [A] 97.77
C:402 [GLY] M:217 [G] 4.23 M:204 [G] 97.77
C:402 [GLY] M:218 [C] 3.2 M:203 [A] 97.77
C:403 [SER] M:204 [G] 3.56 M:217 [G] 90.62
C:403 [SER] M:205 [G] 2.98 M:216 [A] sugar:BB 90.62
C:403 [SER] M:206 [C] 4.84 M:215 [G] 90.62
C:403 [SER] M:218 [C] 4.88 M:203 [A] 90.62
C:404 [GLY] M:205 [G] 4.13 M:216 [A] 98.45
C:404 [GLY] M:206 [C] 3.54 M:215 [G] 98.45
C:405 [THR] M:205 [G] 4.57 M:216 [A] 66.63

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group136 2V3C_C_M C: Signal recognition 54 kda protein, Methanocaldococcus jannaschii (genetically engineered) M: 7s RNA, Methanocaldococcus jannaschii (synthetic) Q57565 tri-helical & Domain of the SRP/SRP receptor G-proteins & P-loop containing nucleoside triphosphate hydrolases Bacterial small signal recognition particle RNA ✘

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1HQ1_A_B 2V3C_C_M 0.92 0.87 0.9 0.62 tri-helical compare
2PXK_A_B 2V3C_C_M 0.95 0.85 0.99 0.6 tri-helical compare
2PXT_A_B 2V3C_C_M 0.95 0.86 0.92 0.55 tri-helical compare
2PXV_A_B 2V3C_C_M 0.93 0.85 1.01 0.52 tri-helical compare
2PXP_A_B 2V3C_C_M 0.95 0.85 1.02 0.57 tri-helical compare
2PXF_A_B 2V3C_C_M 0.95 0.86 0.97 0.57 tri-helical compare
2PXU_A_B 2V3C_C_M 0.93 0.86 0.96 0.55 tri-helical compare
2PXQ_A_B 2V3C_C_M 0.94 0.85 1.09 0.55 tri-helical compare
2PXL_A_B 2V3C_C_M 0.95 0.87 0.88 0.57 tri-helical compare
2PXB_A_B 2V3C_C_M 0.95 0.87 0.86 0.55 tri-helical compare
2PXD_A_B 2V3C_C_M 0.95 0.86 0.89 0.57 tri-helical compare
2PXE_A_B 2V3C_C_M 0.95 0.88 0.7 0.6 tri-helical compare