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All interfaces > All interologs > Interface groups > group137 > 1VQ8_J_0 vs 1YHQ_J_0

Interface analysis


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Licorice
Surface

RNA

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Licorice
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Common contacts -

1VQ8_J
1VQ8_0
1YHQ_J
1YHQ_0
Conserved?
J:31 [LEU] 0:1103 [C] J:31 [LEU] 0:1103 [C] ✔
J:31 [LEU] 0:1104 [C] J:31 [LEU] 0:1104 [C] ✔
J:66 [ASP] 0:2654 [C] J:66 [ASP] 0:2654 [C] ✔
J:83 [ILE] 0:1241 [G] J:83 [ILE] 0:1241 [G] ✔
J:76 [ASP] 0:2815 [G] J:76 [ASP] 0:2815 [G] ✔
J:60 [ARG] 0:1236 [A] J:60 [ARG] 0:1236 [A] ✔
J:60 [ARG] 0:1237 [U] J:60 [ARG] 0:1237 [U] ✔
J:60 [ARG] 0:1241 [G] J:60 [ARG] 0:1241 [G] ✔
J:60 [ARG] 0:1242 [A] J:60 [ARG] 0:1242 [A] ✔
J:20 [GLY] 0:1109 [U] J:20 [GLY] 0:1109 [U] ✔
J:20 [GLY] 0:1242 [A] J:20 [GLY] 0:1242 [A] ✔
J:20 [GLY] 0:1243 [C] J:20 [GLY] 0:1243 [C] ✔
J:20 [GLY] 0:1247 [A] J:20 [GLY] 0:1247 [A] ✔
J:57 [TYR] 0:1242 [A] J:57 [TYR] 0:1242 [A] ✔
J:47 [THR] 0:1117 [A] J:47 [THR] 0:1117 [A] ✔
J:47 [THR] 0:1119 [G] J:47 [THR] 0:1119 [G] ✔
J:47 [THR] 0:1244 [U] J:47 [THR] 0:1244 [U] ✔
J:85 [GLY] 0:1103 [C] J:85 [GLY] 0:1103 [C] ✔
J:85 [GLY] 0:1104 [C] J:85 [GLY] 0:1104 [C] ✔
J:85 [GLY] 0:1240 [G] J:85 [GLY] 0:1240 [G] ✔
J:85 [GLY] 0:1241 [G] J:85 [GLY] 0:1241 [G] ✔
J:69 [TYR] 0:1235 [G] J:69 [TYR] 0:1235 [G] ✔
J:69 [TYR] 0:1236 [A] J:69 [TYR] 0:1236 [A] ✔
J:69 [TYR] 0:1237 [U] J:69 [TYR] 0:1237 [U] ✔
J:69 [TYR] 0:2080 [G] J:69 [TYR] 0:2080 [G] ✔
J:69 [TYR] 0:2081 [A] J:69 [TYR] 0:2081 [A] ✔
J:69 [TYR] 0:2082 [G] J:69 [TYR] 0:2082 [G] ✔
J:69 [TYR] 0:2677 [A] J:69 [TYR] 0:2677 [A] ✔
J:67 [ASN] 0:2064 [U] J:67 [ASN] 0:2064 [U] ✔
J:67 [ASN] 0:2065 [C] J:67 [ASN] 0:2065 [C] ✔
J:67 [ASN] 0:2081 [A] J:67 [ASN] 0:2081 [A] ✔
J:67 [ASN] 0:2082 [G] J:67 [ASN] 0:2082 [G] ✔
J:67 [ASN] 0:2654 [C] J:67 [ASN] 0:2654 [C] ✔
J:19 [MET] 0:1242 [A] J:19 [MET] 0:1242 [A] ✔
J:19 [MET] 0:1243 [C] J:19 [MET] 0:1243 [C] ✔
J:140 [GLY] 0:2803 [C] J:140 [GLY] 0:2803 [C] ✔
J:140 [GLY] 0:2804 [C] J:140 [GLY] 0:2804 [C] ✔
J:139 [LEU] 0:2803 [C] J:139 [LEU] 0:2803 [C] ✔
J:139 [LEU] 0:2804 [C] J:139 [LEU] 0:2804 [C] ✔
J:104 [TYR] 0:2815 [G] J:104 [TYR] 0:2815 [G] ✔
J:89 [HIS] 0:2081 [A] J:89 [HIS] 0:2081 [A] ✔
J:58 [GLU] 0:2802 [C] J:58 [GLU] 0:2802 [C] ✔
J:87 [LEU] 0:1103 [C] J:87 [LEU] 0:1103 [C] ✔
J:87 [LEU] 0:1104 [C] J:87 [LEU] 0:1104 [C] ✔
J:91 [LYS] 0:615 [G] J:91 [LYS] 0:615 [G] ✔
J:91 [LYS] 0:616 [U] J:91 [LYS] 0:616 [U] ✔
J:128 [LYS] 0:1117 [A] J:128 [LYS] 0:1117 [A] ✔
J:128 [LYS] 0:1118 [A] J:128 [LYS] 0:1118 [A] ✔
J:18 [ILE] 0:1243 [C] J:18 [ILE] 0:1243 [C] ✔
J:18 [ILE] 0:1244 [U] J:18 [ILE] 0:1244 [U] ✔
J:101 [VAL] 0:2815 [G] J:101 [VAL] 0:2815 [G] ✔
J:28 [GLU] 0:1103 [C] J:28 [GLU] 0:1103 [C] ✔
J:28 [GLU] 0:1104 [C] J:28 [GLU] 0:1104 [C] ✔
J:52 [GLN] 0:1119 [G] J:52 [GLN] 0:1119 [G] ✔
J:52 [GLN] 0:1244 [U] J:52 [GLN] 0:1244 [U] ✔
J:73 [LYS] 0:2676 [C] J:73 [LYS] 0:2676 [C] ✔
J:73 [LYS] 0:2677 [A] J:73 [LYS] 0:2677 [A] ✔
J:73 [LYS] 0:2804 [C] J:73 [LYS] 0:2804 [C] ✔
J:56 [LYS] 0:1236 [A] J:56 [LYS] 0:1236 [A] ✔
J:56 [LYS] 0:1237 [U] J:56 [LYS] 0:1237 [U] ✔
J:56 [LYS] 0:1242 [A] J:56 [LYS] 0:1242 [A] ✔
J:81 [ARG] 0:1241 [G] J:81 [ARG] 0:1241 [G] ✔
J:81 [ARG] 0:2081 [A] J:81 [ARG] 0:2081 [A] ✔
J:81 [ARG] 0:2082 [G] J:81 [ARG] 0:2082 [G] ✔
J:127 [ILE] 0:2793 [A] J:127 [ILE] 0:2793 [A] ✔
J:93 [ARG] 0:1105 [C] J:93 [ARG] 0:1105 [C] ✔
J:48 [GLY] 0:1244 [U] J:48 [GLY] 0:1244 [U] ✔
J:68 [GLY] 0:2081 [A] J:68 [GLY] 0:2081 [A] ✔
J:68 [GLY] 0:2082 [G] J:68 [GLY] 0:2082 [G] ✔
J:137 [GLU] 0:2803 [C] J:137 [GLU] 0:2803 [C] ✔
J:122 [ASP] 0:1245 [C] J:122 [ASP] 0:1245 [C] ✔
J:102 [ARG] 0:2815 [G] J:102 [ARG] 0:2815 [G] ✔
J:90 [LYS] 0:535 [G] J:90 [LYS] 0:535 [G] ✔
J:90 [LYS] 0:2081 [A] J:90 [LYS] 0:2081 [A] ✔
J:90 [LYS] 0:2082 [G] J:90 [LYS] 0:2082 [G] ✔
J:90 [LYS] 0:2083 [A] J:90 [LYS] 0:2083 [A] ✔
J:88 [PRO] 0:1104 [C] J:88 [PRO] 0:1104 [C] ✔
J:88 [PRO] 0:1105 [C] J:88 [PRO] 0:1105 [C] ✔
J:78 [ILE] 0:1242 [A] J:78 [ILE] 0:1242 [A] ✔
J:72 [PRO] 0:2676 [C] J:72 [PRO] 0:2676 [C] ✔
J:92 [GLN] 0:614 [U] J:92 [GLN] 0:614 [U] ✔
J:70 [PHE] 0:2081 [A] J:70 [PHE] 0:2081 [A] ✔
J:70 [PHE] 0:2082 [G] J:70 [PHE] 0:2082 [G] ✔
J:70 [PHE] 0:2675 [A] J:70 [PHE] 0:2675 [A] ✔
J:70 [PHE] 0:2676 [C] J:70 [PHE] 0:2676 [C] ✔
J:70 [PHE] 0:2677 [A] J:70 [PHE] 0:2677 [A] ✔
J:64 [GLY] 0:1235 [G] J:64 [GLY] 0:1235 [G] ✔
J:80 [LYS] 0:2815 [G] J:80 [LYS] 0:2815 [G] ✔
J:61 [VAL] 0:2677 [A] J:61 [VAL] 0:2677 [A] ✔
J:27 [ALA] 0:1103 [C] J:27 [ALA] 0:1103 [C] ✔
J:99 [GLU] 0:2814 [A] J:99 [GLU] 0:2814 [A] ✔
J:99 [GLU] 0:2815 [G] J:99 [GLU] 0:2815 [G] ✔
J:24 [SER] 0:1102 [C] J:24 [SER] 0:1102 [C] ✔
J:24 [SER] 0:1103 [C] J:24 [SER] 0:1103 [C] ✔
J:24 [SER] 0:1109 [U] J:24 [SER] 0:1109 [U] ✔
J:24 [SER] 0:1241 [G] J:24 [SER] 0:1241 [G] ✔
J:24 [SER] 0:1247 [A] J:24 [SER] 0:1247 [A] ✔
J:25 [GLN] 0:1109 [U] J:25 [GLN] 0:1109 [U] ✔
J:74 [ARG] 0:2675 [A] J:74 [ARG] 0:2675 [A] ✔
J:74 [ARG] 0:2676 [C] J:74 [ARG] 0:2676 [C] ✔
J:21 [ARG] 0:1109 [U] J:21 [ARG] 0:1109 [U] ✔
J:21 [ARG] 0:1243 [C] J:21 [ARG] 0:1243 [C] ✔
J:21 [ARG] 0:1244 [U] J:21 [ARG] 0:1244 [U] ✔
J:21 [ARG] 0:1246 [A] J:21 [ARG] 0:1246 [A] ✔
J:21 [ARG] 0:1247 [A] J:21 [ARG] 0:1247 [A] ✔
J:125 [SER] 0:1245 [C] J:125 [SER] 0:1245 [C] ✔
J:84 [ARG] 0:2081 [A] J:84 [ARG] 0:2081 [A] ✔
J:84 [ARG] 0:2082 [G] J:84 [ARG] 0:2082 [G] ✔
J:59 [LYS] 0:1235 [G] J:59 [LYS] 0:1235 [G] ✔
J:59 [LYS] 0:1236 [A] J:59 [LYS] 0:1236 [A] ✔
J:65 [ASN] 0:1235 [G] J:65 [ASN] 0:1235 [G] ✔
J:65 [ASN] 0:2065 [C] J:65 [ASN] 0:2065 [C] ✔
J:65 [ASN] 0:2066 [C] J:65 [ASN] 0:2066 [C] ✔
J:82 [THR] 0:1241 [G] J:82 [THR] 0:1241 [G] ✔
J:82 [THR] 0:1242 [A] J:82 [THR] 0:1242 [A] ✔
J:49 [ARG] 0:1118 [A] J:49 [ARG] 0:1118 [A] ✔
J:49 [ARG] 0:1119 [G] J:49 [ARG] 0:1119 [G] ✔
J:49 [ARG] 0:1244 [U] J:49 [ARG] 0:1244 [U] ✔
J:103 [VAL] 0:2815 [G] J:103 [VAL] 0:2815 [G] ✔
J:71 [TYR] 0:1242 [A] J:71 [TYR] 0:1242 [A] ✔
J:71 [TYR] 0:2676 [C] J:71 [TYR] 0:2676 [C] ✔
J:71 [TYR] 0:2677 [A] J:71 [TYR] 0:2677 [A] ✔
J:62 [ASP] 0:2803 [C] J:62 [ASP] 0:2803 [C] ✔
J:126 [ASN] 0:1244 [U] J:126 [ASN] 0:1244 [U] ✔
J:126 [ASN] 0:1245 [C] J:126 [ASN] 0:1245 [C] ✔
J:46 [ILE] 0:1243 [C] J:46 [ILE] 0:1243 [C] ✔
J:45 [VAL] 0:1243 [C] J:45 [VAL] 0:1243 [C] ✔
J:86 [MET] 0:1103 [C] J:86 [MET] 0:1103 [C] ✔
J:86 [MET] 0:1104 [C] J:86 [MET] 0:1104 [C] ✔
J:86 [MET] 0:1240 [G] J:86 [MET] 0:1240 [G] ✔
J:86 [MET] 0:1241 [G] J:86 [MET] 0:1241 [G] ✔
J:86 [MET] 0:1242 [A] J:86 [MET] 0:1242 [A] ✔
J:86 [MET] 0:1247 [A] J:86 [MET] 0:1247 [A] ✔
J:95 [ARG] 0:533 [U] J:95 [ARG] 0:533 [U] ✔
J:95 [ARG] 0:534 [C] J:95 [ARG] 0:534 [C] ✔
J:95 [ARG] 0:2814 [A] J:95 [ARG] 0:2814 [A] ✔
J:63 [ILE] 0:1235 [G] J:63 [ILE] 0:1235 [G] ✔
J:63 [ILE] 0:1236 [A] J:63 [ILE] 0:1236 [A] ✔
J:138 [THR] 0:2803 [C] J:138 [THR] 0:2803 [C] ✔
J:91 [LYS] 0:1105 [C] J:91 [LYS] 0:1105 [C] ❌ 1YHQ_J_0
J:73 [LYS] 0:2675 [A] J:73 [LYS] 0:2675 [A] ❌ 1YHQ_J_0
J:21 [ARG] 0:1242 [A] J:21 [ARG] 0:1242 [A] ❌ 1YHQ_J_0
J:84 [ARG] 0:2080 [G] J:84 [ARG] 0:2080 [G] ❌ 1YHQ_J_0
J:56 [LYS] 0:1241 [G] J:56 [LYS] 0:1241 [G] ❌ 1VQ8_J_0
J:93 [ARG] 0:1104 [C] J:93 [ARG] 0:1104 [C] ❌ 1VQ8_J_0
J:65 [ASN] 0:1234 [U] J:65 [ASN] 0:1234 [U] ❌ 1VQ8_0:1234 no longer at interface
J:66 [ASP] 0:2655 [U] J:66 [ASP] 0:2655 [U] ❌ 1VQ8_0:2655 no longer at interface
J:92 [GLN] 0:613 [C] J:92 [GLN] 0:613 [C] ❌ 1VQ8_0:613 no longer at interface
J:142 [ASN] 0:2675 [A] J:142 [ASN] 0:2675 [A] ❌ 1YHQ_J:142 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA 1.0 0.19 1.00 1.0 1.0 1.0 1.0 0.99 0.98 0.86 0.40


Other pairs involving 1VQ8_J_0 or 1YHQ_J_0

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6AZ3_H_1 0.54 0.75 1.56 0.29 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7RYG_I_A 0.48 0.91 3.68 0.19 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6S0Z_H_A 0.39 0.92 3.38 0.22 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7K00_i_a 0.39 0.9 3.39 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7O7Y_BO_B5 0.54 0.94 1.64 0.31 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7K00_i_a 0.39 0.9 3.4 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7O7Y_BO_B5 0.55 0.94 1.64 0.3 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7RYG_I_A 0.47 0.91 3.7 0.17 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6S0Z_H_A 0.39 0.92 3.37 0.22 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare