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All interfaces > All interologs > Interface groups > group137 > 1VQ8_J_0 vs 4Y4O_1N_1A

Interface analysis


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Common contacts -

1VQ8_J
1VQ8_0
4Y4O_1N
4Y4O_1A
Conserved?
J:31 [LEU] 0:1103 [C] 1N:35 [ARG] 1A:1052 [C] ✔
J:31 [LEU] 0:1104 [C] 1N:35 [ARG] 1A:1053 [C] ✔
J:83 [ILE] 0:1241 [G] 1N:103 [VAL] 1A:1183 [G] ✔
J:60 [ARG] 0:1236 [A] 1N:73 [THR] 1A:1178 [A] ✔
J:20 [GLY] 0:1109 [U] 1N:24 [GLY] 1A:1058 [U] ✔
J:20 [GLY] 0:1242 [A] 1N:24 [GLY] 1A:1184 [G] ✔
J:20 [GLY] 0:1243 [C] 1N:24 [GLY] 1A:1185 [C] ✔
J:20 [GLY] 0:1247 [A] 1N:24 [GLY] 1A:1189 [A] ✔
J:57 [TYR] 0:1242 [A] 1N:72 [TYR] 1A:1184 [G] ✔
J:47 [THR] 0:1119 [G] 1N:63 [THR] 1A:1068 [G] ✔
J:47 [THR] 0:1244 [U] 1N:63 [THR] 1A:1186 [U] ✔
J:85 [GLY] 0:1103 [C] 1N:105 [GLY] 1A:1052 [C] ✔
J:85 [GLY] 0:1104 [C] 1N:105 [GLY] 1A:1053 [C] ✔
J:85 [GLY] 0:1240 [G] 1N:105 [GLY] 1A:1182 [G] ✔
J:85 [GLY] 0:1241 [G] 1N:105 [GLY] 1A:1183 [G] ✔
J:69 [TYR] 0:1235 [G] 1N:82 [LEU] 1A:1177 [G] ✔
J:69 [TYR] 0:1236 [A] 1N:82 [LEU] 1A:1178 [A] ✔
J:19 [MET] 0:1242 [A] 1N:23 [LEU] 1A:1184 [G] ✔
J:19 [MET] 0:1243 [C] 1N:23 [LEU] 1A:1185 [C] ✔
J:89 [HIS] 0:2081 [A] 1N:109 [LYS] 1A:2062 [C] ✔
J:87 [LEU] 0:1103 [C] 1N:107 [LEU] 1A:1052 [C] ✔
J:87 [LEU] 0:1104 [C] 1N:107 [LEU] 1A:1053 [C] ✔
J:91 [LYS] 0:615 [G] 1N:111 [PRO] 1A:581 [G] ✔
J:18 [ILE] 0:1243 [C] 1N:22 [THR] 1A:1185 [C] ✔
J:18 [ILE] 0:1244 [U] 1N:22 [THR] 1A:1186 [U] ✔
J:28 [GLU] 0:1103 [C] 1N:32 [THR] 1A:1052 [C] ✔
J:52 [GLN] 0:1119 [G] 1N:69 [GLN] 1A:1068 [G] ✔
J:81 [ARG] 0:1241 [G] 1N:101 [HIS] 1A:1183 [G] ✔
J:48 [GLY] 0:1244 [U] 1N:64 [GLY] 1A:1186 [U] ✔
J:90 [LYS] 0:535 [G] 1N:110 [GLY] 1A:554 [A] ✔
J:88 [PRO] 0:1104 [C] 1N:108 [PRO] 1A:1053 [C] ✔
J:88 [PRO] 0:1105 [C] 1N:108 [PRO] 1A:1054 [C] ✔
J:78 [ILE] 0:1242 [A] 1N:98 [VAL] 1A:1184 [G] ✔
J:92 [GLN] 0:614 [U] 1N:112 [LEU] 1A:580 [U] ✔
J:70 [PHE] 0:2677 [A] 1N:83 [LYS] 1A:2653 [G] ✔
J:80 [LYS] 0:2815 [G] 1N:100 [GLU] 1A:2793 [G] ✔
J:61 [VAL] 0:2677 [A] 1N:74 [ARG] 1A:2653 [G] ✔
J:27 [ALA] 0:1103 [C] 1N:31 [ALA] 1A:1052 [C] ✔
J:99 [GLU] 0:2814 [A] 1N:118 [LYS] 1A:2792 [U] ✔
J:99 [GLU] 0:2815 [G] 1N:118 [LYS] 1A:2793 [G] ✔
J:24 [SER] 0:1102 [C] 1N:28 [THR] 1A:1051 [C] ✔
J:24 [SER] 0:1103 [C] 1N:28 [THR] 1A:1052 [C] ✔
J:24 [SER] 0:1109 [U] 1N:28 [THR] 1A:1058 [U] ✔
J:24 [SER] 0:1241 [G] 1N:28 [THR] 1A:1183 [G] ✔
J:24 [SER] 0:1247 [A] 1N:28 [THR] 1A:1189 [A] ✔
J:25 [GLN] 0:1109 [U] 1N:29 [LYS] 1A:1058 [U] ✔
J:74 [ARG] 0:2675 [A] 1N:94 [HIS] 1A:2651 [A] ✔
J:74 [ARG] 0:2676 [C] 1N:94 [HIS] 1A:2652 [G] ✔
J:21 [ARG] 0:1109 [U] 1N:25 [ARG] 1A:1058 [U] ✔
J:21 [ARG] 0:1243 [C] 1N:25 [ARG] 1A:1185 [C] ✔
J:21 [ARG] 0:1244 [U] 1N:25 [ARG] 1A:1186 [U] ✔
J:21 [ARG] 0:1246 [A] 1N:25 [ARG] 1A:1188 [A] ✔
J:21 [ARG] 0:1247 [A] 1N:25 [ARG] 1A:1189 [A] ✔
J:82 [THR] 0:1241 [G] 1N:102 [ALA] 1A:1183 [G] ✔
J:82 [THR] 0:1242 [A] 1N:102 [ALA] 1A:1184 [G] ✔
J:49 [ARG] 0:1118 [A] 1N:65 [LYS] 1A:1067 [A] ✔
J:49 [ARG] 0:1119 [G] 1N:65 [LYS] 1A:1068 [G] ✔
J:49 [ARG] 0:1244 [U] 1N:65 [LYS] 1A:1186 [U] ✔
J:46 [ILE] 0:1243 [C] 1N:62 [VAL] 1A:1185 [C] ✔
J:45 [VAL] 0:1243 [C] 1N:61 [ARG] 1A:1185 [C] ✔
J:86 [MET] 0:1103 [C] 1N:106 [MET] 1A:1052 [C] ✔
J:86 [MET] 0:1104 [C] 1N:106 [MET] 1A:1053 [C] ✔
J:86 [MET] 0:1240 [G] 1N:106 [MET] 1A:1182 [G] ✔
J:86 [MET] 0:1241 [G] 1N:106 [MET] 1A:1183 [G] ✔
J:86 [MET] 0:1242 [A] 1N:106 [MET] 1A:1184 [G] ✔
J:95 [ARG] 0:533 [U] 1N:114 [ARG] 1A:552 [C] ✔
J:95 [ARG] 0:534 [C] 1N:114 [ARG] 1A:553 [A] ✔
J:63 [ILE] 0:1235 [G] 1N:75 [TYR] 1A:1177 [G] ✔
J:60 [ARG] 0:1241 [G] 1N:73 [THR] 1A:1183 [G] ❌ 4Y4O_1N_1A
J:60 [ARG] 0:1242 [A] 1N:73 [THR] 1A:1184 [G] ❌ 4Y4O_1N_1A
J:47 [THR] 0:1117 [A] 1N:63 [THR] 1A:1066 [A] ❌ 4Y4O_1N_1A
J:69 [TYR] 0:2080 [G] 1N:82 [LEU] 1A:2061 [C] ❌ 4Y4O_1N_1A
J:69 [TYR] 0:2081 [A] 1N:82 [LEU] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:69 [TYR] 0:2677 [A] 1N:82 [LEU] 1A:2653 [G] ❌ 4Y4O_1N_1A
J:91 [LYS] 0:616 [U] 1N:111 [PRO] 1A:582 [G] ❌ 4Y4O_1N_1A
J:91 [LYS] 0:1105 [C] 1N:111 [PRO] 1A:1054 [C] ❌ 4Y4O_1N_1A
J:28 [GLU] 0:1104 [C] 1N:32 [THR] 1A:1053 [C] ❌ 4Y4O_1N_1A
J:52 [GLN] 0:1244 [U] 1N:69 [GLN] 1A:1186 [U] ❌ 4Y4O_1N_1A
J:81 [ARG] 0:2081 [A] 1N:101 [HIS] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:68 [GLY] 0:2081 [A] 1N:81 [GLY] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:102 [ARG] 0:2815 [G] 1N:121 [LYS] 1A:2793 [G] ❌ 4Y4O_1N_1A
J:90 [LYS] 0:2081 [A] 1N:110 [GLY] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:90 [LYS] 0:2083 [A] 1N:110 [GLY] 1A:2064 [A] ❌ 4Y4O_1N_1A
J:70 [PHE] 0:2081 [A] 1N:83 [LYS] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:70 [PHE] 0:2675 [A] 1N:83 [LYS] 1A:2651 [A] ❌ 4Y4O_1N_1A
J:70 [PHE] 0:2676 [C] 1N:83 [LYS] 1A:2652 [G] ❌ 4Y4O_1N_1A
J:64 [GLY] 0:1235 [G] 1N:76 [SER] 1A:1177 [G] ❌ 4Y4O_1N_1A
J:21 [ARG] 0:1242 [A] 1N:25 [ARG] 1A:1184 [G] ❌ 4Y4O_1N_1A
J:84 [ARG] 0:2080 [G] 1N:104 [LYS] 1A:2061 [C] ❌ 4Y4O_1N_1A
J:84 [ARG] 0:2081 [A] 1N:104 [LYS] 1A:2062 [C] ❌ 4Y4O_1N_1A
J:86 [MET] 0:1247 [A] 1N:106 [MET] 1A:1189 [A] ❌ 4Y4O_1N_1A
J:95 [ARG] 0:2814 [A] 1N:114 [ARG] 1A:2792 [U] ❌ 4Y4O_1N_1A
J:63 [ILE] 0:1236 [A] 1N:75 [TYR] 1A:1178 [A] ❌ 4Y4O_1N_1A
J:81 [ARG] 0:1242 [A] 1N:101 [HIS] 1A:1184 [G] ❌ 1VQ8_J_0
J:84 [ARG] 0:1241 [G] 1N:104 [LYS] 1A:1183 [G] ❌ 1VQ8_J_0
J:89 [HIS] 0:1104 [C] 1N:109 [LYS] 1A:1053 [C] ❌ 1VQ8_J_0
J:89 [HIS] 0:2080 [G] 1N:109 [LYS] 1A:2061 [C] ❌ 1VQ8_J_0
J:89 [HIS] 0:616 [U] 1N:109 [LYS] 1A:582 [G] ❌ 1VQ8_J_0
J:89 [HIS] 0:615 [G] 1N:109 [LYS] 1A:581 [G] ❌ 1VQ8_J_0
J:90 [LYS] 0:615 [G] 1N:110 [GLY] 1A:581 [G] ❌ 1VQ8_J_0
J:91 [LYS] 0:535 [G] 1N:111 [PRO] 1A:554 [A] ❌ 1VQ8_J_0
J:91 [LYS] 0:534 [C] 1N:111 [PRO] 1A:553 [A] ❌ 1VQ8_J_0
J:91 [LYS] 0:614 [U] 1N:111 [PRO] 1A:580 [U] ❌ 1VQ8_J_0
J:92 [GLN] 0:615 [G] 1N:112 [LEU] 1A:581 [G] ❌ 1VQ8_J_0
J:95 [ARG] 0:535 [G] 1N:114 [ARG] 1A:554 [A] ❌ 1VQ8_J_0
J:95 [ARG] 0:2083 [A] 1N:114 [ARG] 1A:2064 [A] ❌ 1VQ8_J_0
J:99 [GLU] 0:533 [U] 1N:118 [LYS] 1A:552 [C] ❌ 1VQ8_J_0
J:31 [LEU] 0:1105 [C] 1N:35 [ARG] 1A:1054 [C] ❌ 1VQ8_J_0
J:47 [THR] 0:1243 [C] 1N:63 [THR] 1A:1185 [C] ❌ 1VQ8_J_0
J:49 [ARG] 0:1117 [A] 1N:65 [LYS] 1A:1066 [A] ❌ 1VQ8_J_0
J:60 [ARG] 0:1235 [G] 1N:73 [THR] 1A:1177 [G] ❌ 1VQ8_J_0
J:61 [VAL] 0:1235 [G] 1N:74 [ARG] 1A:1177 [G] ❌ 1VQ8_J_0
J:61 [VAL] 0:2676 [C] 1N:74 [ARG] 1A:2652 [G] ❌ 1VQ8_J_0
J:63 [ILE] 0:2081 [A] 1N:75 [TYR] 1A:2062 [C] ❌ 1VQ8_J_0
J:63 [ILE] 0:2065 [C] 1N:75 [TYR] 1A:2046 [G] ❌ 1VQ8_J_0
J:64 [GLY] 0:2677 [A] 1N:76 [SER] 1A:2653 [G] ❌ 1VQ8_J_0
J:66 [ASP] 0:1235 [G] 1N:78 [TYR] 1A:1177 [G] ❌ 1VQ8_J_0
J:66 [ASP] 0:2677 [A] 1N:78 [TYR] 1A:2653 [G] ❌ 1VQ8_J_0
J:68 [GLY] 0:1235 [G] 1N:81 [GLY] 1A:1177 [G] ❌ 1VQ8_J_0
J:70 [PHE] 0:2804 [C] 1N:83 [LYS] 1A:2782 [C] ❌ 1VQ8_J_0
J:70 [PHE] 0:2803 [C] 1N:83 [LYS] 1A:2781 [C] ❌ 1VQ8_J_0
J:66 [ASP] 0:2654 [C] 1N:78 [TYR] 1A:2631 [C] ❌ 4Y4O_1A:2631 no longer at interface
J:60 [ARG] 0:1237 [U] 1N:73 [THR] 1A:1179 [U] ❌ 4Y4O_1A:1179 no longer at interface
J:69 [TYR] 0:1237 [U] 1N:82 [LEU] 1A:1179 [U] ❌ 4Y4O_1A:1179 no longer at interface
J:69 [TYR] 0:2082 [G] 1N:82 [LEU] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:56 [LYS] 0:1237 [U] 1N:71 [ILE] 1A:1179 [U] ❌ 4Y4O_1N:71, 4Y4O_1A:1179 no longer at interface
J:81 [ARG] 0:2082 [G] 1N:101 [HIS] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:68 [GLY] 0:2082 [G] 1N:81 [GLY] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:90 [LYS] 0:2082 [G] 1N:110 [GLY] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:70 [PHE] 0:2082 [G] 1N:83 [LYS] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:84 [ARG] 0:2082 [G] 1N:104 [LYS] 1A:2063 [U] ❌ 4Y4O_1A:2063 no longer at interface
J:65 [ASN] 0:2066 [C] 1N:77 [GLY] 1A:2047 [C] ❌ 4Y4O_1N:77, 4Y4O_1A:2047 no longer at interface
J:31 [LEU] 0:1106 [A] 1N:35 [ARG] 1A:1055 [A] ❌ 1VQ8_0:1106 no longer at interface
J:64 [GLY] 0:2678 [A] 1N:76 [SER] 1A:2654 [G] ❌ 1VQ8_0:2678 no longer at interface
J:66 [ASP] 0:2655 [U] 1N:78 [TYR] 1A:2632 [C] ❌ 1VQ8_0:2655 no longer at interface
J:66 [ASP] 0:2678 [A] 1N:78 [TYR] 1A:2654 [G] ❌ 1VQ8_0:2678 no longer at interface
J:68 [GLY] 0:2678 [A] 1N:81 [GLY] 1A:2654 [G] ❌ 1VQ8_0:2678 no longer at interface
J:70 [PHE] 0:2678 [A] 1N:83 [LYS] 1A:2654 [G] ❌ 1VQ8_0:2678 no longer at interface
J:76 [ASP] 0:2815 [G] 1N:96 [GLU] 1A:2793 [G] ❌ 4Y4O_1N:96 no longer at interface
J:104 [TYR] 0:2815 [G] 1N:123 [TYR] 1A:2793 [G] ❌ 4Y4O_1N:123 no longer at interface
J:101 [VAL] 0:2815 [G] 1N:120 [LEU] 1A:2793 [G] ❌ 4Y4O_1N:120 no longer at interface
J:73 [LYS] 0:2675 [A] 1N:90 [MET] 1A:2651 [A] ❌ 4Y4O_1N:90 no longer at interface
J:73 [LYS] 0:2676 [C] 1N:90 [MET] 1A:2652 [G] ❌ 4Y4O_1N:90 no longer at interface
J:73 [LYS] 0:2677 [A] 1N:90 [MET] 1A:2653 [G] ❌ 4Y4O_1N:90 no longer at interface
J:73 [LYS] 0:2804 [C] 1N:90 [MET] 1A:2782 [C] ❌ 4Y4O_1N:90 no longer at interface
J:56 [LYS] 0:1236 [A] 1N:71 [ILE] 1A:1178 [A] ❌ 4Y4O_1N:71 no longer at interface
J:56 [LYS] 0:1242 [A] 1N:71 [ILE] 1A:1184 [G] ❌ 4Y4O_1N:71 no longer at interface
J:72 [PRO] 0:2676 [C] 1N:85 [ILE] 1A:2652 [G] ❌ 4Y4O_1N:85 no longer at interface
J:65 [ASN] 0:1235 [G] 1N:77 [GLY] 1A:1177 [G] ❌ 4Y4O_1N:77 no longer at interface
J:65 [ASN] 0:2065 [C] 1N:77 [GLY] 1A:2046 [G] ❌ 4Y4O_1N:77 no longer at interface
J:103 [VAL] 0:2815 [G] 1N:122 [VAL] 1A:2793 [G] ❌ 4Y4O_1N:122 no longer at interface
J:71 [TYR] 0:1242 [A] 1N:84 [LYS] 1A:1184 [G] ❌ 4Y4O_1N:84 no longer at interface
J:71 [TYR] 0:2676 [C] 1N:84 [LYS] 1A:2652 [G] ❌ 4Y4O_1N:84 no longer at interface
J:71 [TYR] 0:2677 [A] 1N:84 [LYS] 1A:2653 [G] ❌ 4Y4O_1N:84 no longer at interface
J:94 [GLY] 0:615 [G] 1N:113 [GLY] 1A:581 [G] ❌ 1VQ8_J:94 no longer at interface
J:96 [GLU] 0:614 [U] 1N:115 [ARG] 1A:580 [U] ❌ 1VQ8_J:96 no longer at interface
J:98 [PHE] 0:2815 [G] 1N:117 [PHE] 1A:2793 [G] ❌ 1VQ8_J:98 no longer at interface
J:53 [ILE] 0:1242 [A] 1N:70 [LYS] 1A:1184 [G] ❌ 1VQ8_J:53 no longer at interface
J:53 [ILE] 0:1241 [G] 1N:70 [LYS] 1A:1183 [G] ❌ 1VQ8_J:53 no longer at interface
J:77 [GLY] 0:2675 [A] 1N:97 [ARG] 1A:2651 [A] ❌ 1VQ8_J:77 no longer at interface
J:77 [GLY] 0:2676 [C] 1N:97 [ARG] 1A:2652 [G] ❌ 1VQ8_J:77 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A 0.92 3.01 0.20 0.62 0.93 0.64 0.81 0.52 0.50 0.23 0.43


Other pairs involving 1VQ8_J_0 or 4Y4O_1N_1A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6AZ3_H_1 0.56 0.68 2.95 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6S0Z_H_A 0.72 0.97 1.13 0.53 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 6S0Z_H_A 0.39 0.92 3.37 0.22 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7K00_i_a 0.74 0.97 0.8 0.6 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7K00_i_a 0.39 0.9 3.4 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7O7Y_BO_B5 0.39 0.89 3.76 0.16 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7O7Y_BO_B5 0.55 0.94 1.64 0.3 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7RYG_I_A 0.88 0.96 1.67 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7RYG_I_A 0.47 0.91 3.7 0.17 Ribosomal protein L13 and L16-A compare