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All interfaces > All interologs > Interface groups > group137 > 1VQ8_J_0 vs 6S0Z_H_A

Interface analysis


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Licorice
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RNA

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Licorice
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Common contacts -

1VQ8_J
1VQ8_0
6S0Z_H
6S0Z_A
Conserved?
J:31 [LEU] 0:1103 [C] H:38 [ARG] A:1050 [C] ✔
J:31 [LEU] 0:1104 [C] H:38 [ARG] A:1051 [C] ✔
J:60 [ARG] 0:1236 [A] H:76 [TYR] A:1176 [U] ✔
J:60 [ARG] 0:1237 [U] H:76 [TYR] A:1177 [A] ✔
J:20 [GLY] 0:1109 [U] H:27 [GLY] A:1056 [U] ✔
J:20 [GLY] 0:1243 [C] H:27 [GLY] A:1183 [G] ✔
J:20 [GLY] 0:1247 [A] H:27 [GLY] A:1187 [A] ✔
J:47 [THR] 0:1119 [G] H:66 [THR] A:1066 [G] ✔
J:47 [THR] 0:1244 [U] H:66 [THR] A:1184 [C] ✔
J:85 [GLY] 0:1103 [C] H:108 [GLY] A:1050 [C] ✔
J:85 [GLY] 0:1241 [G] H:108 [GLY] A:1181 [G] ✔
J:69 [TYR] 0:1235 [G] H:85 [ILE] A:1175 [G] ✔
J:69 [TYR] 0:1236 [A] H:85 [ILE] A:1176 [U] ✔
J:19 [MET] 0:1243 [C] H:26 [LEU] A:1183 [G] ✔
J:89 [HIS] 0:2081 [A] H:112 [SER] A:2067 [U] ✔
J:87 [LEU] 0:1103 [C] H:110 [LEU] A:1050 [C] ✔
J:87 [LEU] 0:1104 [C] H:110 [LEU] A:1051 [C] ✔
J:18 [ILE] 0:1244 [U] H:25 [THR] A:1184 [C] ✔
J:28 [GLU] 0:1103 [C] H:35 [SER] A:1050 [C] ✔
J:52 [GLN] 0:1119 [G] H:72 [ASP] A:1066 [G] ✔
J:88 [PRO] 0:1104 [C] H:111 [PRO] A:1051 [C] ✔
J:88 [PRO] 0:1105 [C] H:111 [PRO] A:1052 [A] ✔
J:92 [GLN] 0:614 [U] H:114 [ARG] A:600 [U] ✔
J:70 [PHE] 0:2677 [A] H:86 [LYS] A:2668 [A] ✔
J:80 [LYS] 0:2815 [G] H:103 [GLU] A:2807 [G] ✔
J:61 [VAL] 0:2677 [A] H:77 [ARG] A:2668 [A] ✔
J:27 [ALA] 0:1103 [C] H:34 [ALA] A:1050 [C] ✔
J:99 [GLU] 0:2814 [A] H:121 [LYS] A:2806 [U] ✔
J:99 [GLU] 0:2815 [G] H:121 [LYS] A:2807 [G] ✔
J:24 [SER] 0:1102 [C] H:31 [SER] A:1049 [C] ✔
J:24 [SER] 0:1103 [C] H:31 [SER] A:1050 [C] ✔
J:24 [SER] 0:1109 [U] H:31 [SER] A:1056 [U] ✔
J:24 [SER] 0:1247 [A] H:31 [SER] A:1187 [A] ✔
J:25 [GLN] 0:1109 [U] H:32 [GLU] A:1056 [U] ✔
J:74 [ARG] 0:2676 [C] H:97 [ASN] A:2667 [G] ✔
J:21 [ARG] 0:1109 [U] H:28 [ARG] A:1056 [U] ✔
J:21 [ARG] 0:1244 [U] H:28 [ARG] A:1184 [C] ✔
J:21 [ARG] 0:1246 [A] H:28 [ARG] A:1186 [A] ✔
J:21 [ARG] 0:1247 [A] H:28 [ARG] A:1187 [A] ✔
J:65 [ASN] 0:1235 [G] H:80 [ASN] A:1175 [G] ✔
J:65 [ASN] 0:2065 [C] H:80 [ASN] A:2051 [C] ✔
J:82 [THR] 0:1242 [A] H:105 [SER] A:1182 [G] ✔
J:86 [MET] 0:1103 [C] H:109 [MET] A:1050 [C] ✔
J:86 [MET] 0:1104 [C] H:109 [MET] A:1051 [C] ✔
J:86 [MET] 0:1241 [G] H:109 [MET] A:1181 [G] ✔
J:86 [MET] 0:1242 [A] H:109 [MET] A:1182 [G] ✔
J:95 [ARG] 0:533 [U] H:117 [GLU] A:572 [C] ✔
J:95 [ARG] 0:534 [C] H:117 [GLU] A:573 [A] ✔
J:63 [ILE] 0:1235 [G] H:78 [HIS] A:1175 [G] ✔
J:63 [ILE] 0:1236 [A] H:78 [HIS] A:1176 [U] ✔
J:83 [ILE] 0:1241 [G] H:106 [ILE] A:1181 [G] ❌ 6S0Z_H_A
J:60 [ARG] 0:1241 [G] H:76 [TYR] A:1181 [G] ❌ 6S0Z_H_A
J:60 [ARG] 0:1242 [A] H:76 [TYR] A:1182 [G] ❌ 6S0Z_H_A
J:20 [GLY] 0:1242 [A] H:27 [GLY] A:1182 [G] ❌ 6S0Z_H_A
J:57 [TYR] 0:1242 [A] H:75 [TYR] A:1182 [G] ❌ 6S0Z_H_A
J:85 [GLY] 0:1104 [C] H:108 [GLY] A:1051 [C] ❌ 6S0Z_H_A
J:69 [TYR] 0:1237 [U] H:85 [ILE] A:1177 [A] ❌ 6S0Z_H_A
J:69 [TYR] 0:2081 [A] H:85 [ILE] A:2067 [U] ❌ 6S0Z_H_A
J:69 [TYR] 0:2082 [G] H:85 [ILE] A:2068 [U] ❌ 6S0Z_H_A
J:69 [TYR] 0:2677 [A] H:85 [ILE] A:2668 [A] ❌ 6S0Z_H_A
J:19 [MET] 0:1242 [A] H:26 [LEU] A:1182 [G] ❌ 6S0Z_H_A
J:18 [ILE] 0:1243 [C] H:25 [THR] A:1183 [G] ❌ 6S0Z_H_A
J:28 [GLU] 0:1104 [C] H:35 [SER] A:1051 [C] ❌ 6S0Z_H_A
J:52 [GLN] 0:1244 [U] H:72 [ASP] A:1184 [C] ❌ 6S0Z_H_A
J:81 [ARG] 0:1241 [G] H:104 [ASN] A:1181 [G] ❌ 6S0Z_H_A
J:81 [ARG] 0:2081 [A] H:104 [ASN] A:2067 [U] ❌ 6S0Z_H_A
J:81 [ARG] 0:2082 [G] H:104 [ASN] A:2068 [U] ❌ 6S0Z_H_A
J:93 [ARG] 0:1105 [C] H:115 [LEU] A:1052 [A] ❌ 6S0Z_H_A
J:48 [GLY] 0:1244 [U] H:67 [GLY] A:1184 [C] ❌ 6S0Z_H_A
J:68 [GLY] 0:2081 [A] H:84 [GLY] A:2067 [U] ❌ 6S0Z_H_A
J:68 [GLY] 0:2082 [G] H:84 [GLY] A:2068 [U] ❌ 6S0Z_H_A
J:102 [ARG] 0:2815 [G] H:124 [PHE] A:2807 [G] ❌ 6S0Z_H_A
J:90 [LYS] 0:535 [G] H:113 [THR] A:574 [A] ❌ 6S0Z_H_A
J:90 [LYS] 0:2081 [A] H:113 [THR] A:2067 [U] ❌ 6S0Z_H_A
J:90 [LYS] 0:2082 [G] H:113 [THR] A:2068 [U] ❌ 6S0Z_H_A
J:90 [LYS] 0:2083 [A] H:113 [THR] A:2069 [A] ❌ 6S0Z_H_A
J:78 [ILE] 0:1242 [A] H:101 [LEU] A:1182 [G] ❌ 6S0Z_H_A
J:70 [PHE] 0:2081 [A] H:86 [LYS] A:2067 [U] ❌ 6S0Z_H_A
J:70 [PHE] 0:2082 [G] H:86 [LYS] A:2068 [U] ❌ 6S0Z_H_A
J:70 [PHE] 0:2675 [A] H:86 [LYS] A:2666 [A] ❌ 6S0Z_H_A
J:70 [PHE] 0:2676 [C] H:86 [LYS] A:2667 [G] ❌ 6S0Z_H_A
J:64 [GLY] 0:1235 [G] H:79 [SER] A:1175 [G] ❌ 6S0Z_H_A
J:24 [SER] 0:1241 [G] H:31 [SER] A:1181 [G] ❌ 6S0Z_H_A
J:74 [ARG] 0:2675 [A] H:97 [ASN] A:2666 [A] ❌ 6S0Z_H_A
J:21 [ARG] 0:1242 [A] H:28 [ARG] A:1182 [G] ❌ 6S0Z_H_A
J:21 [ARG] 0:1243 [C] H:28 [ARG] A:1183 [G] ❌ 6S0Z_H_A
J:82 [THR] 0:1241 [G] H:105 [SER] A:1181 [G] ❌ 6S0Z_H_A
J:86 [MET] 0:1247 [A] H:109 [MET] A:1187 [A] ❌ 6S0Z_H_A
J:95 [ARG] 0:2814 [A] H:117 [GLU] A:2806 [U] ❌ 6S0Z_H_A
J:78 [ILE] 0:1243 [C] H:101 [LEU] A:1183 [G] ❌ 1VQ8_J_0
J:81 [ARG] 0:1242 [A] H:104 [ASN] A:1182 [G] ❌ 1VQ8_J_0
J:82 [THR] 0:1243 [C] H:105 [SER] A:1183 [G] ❌ 1VQ8_J_0
J:83 [ILE] 0:1242 [A] H:106 [ILE] A:1182 [G] ❌ 1VQ8_J_0
J:85 [GLY] 0:1242 [A] H:108 [GLY] A:1182 [G] ❌ 1VQ8_J_0
J:86 [MET] 0:1243 [C] H:109 [MET] A:1183 [G] ❌ 1VQ8_J_0
J:90 [LYS] 0:615 [G] H:113 [THR] A:601 [G] ❌ 1VQ8_J_0
J:90 [LYS] 0:616 [U] H:113 [THR] A:602 [G] ❌ 1VQ8_J_0
J:92 [GLN] 0:535 [G] H:114 [ARG] A:574 [A] ❌ 1VQ8_J_0
J:92 [GLN] 0:534 [C] H:114 [ARG] A:573 [A] ❌ 1VQ8_J_0
J:92 [GLN] 0:615 [G] H:114 [ARG] A:601 [G] ❌ 1VQ8_J_0
J:93 [ARG] 0:614 [U] H:115 [LEU] A:600 [U] ❌ 1VQ8_J_0
J:93 [ARG] 0:615 [G] H:115 [LEU] A:601 [G] ❌ 1VQ8_J_0
J:95 [ARG] 0:2083 [A] H:117 [GLU] A:2069 [A] ❌ 1VQ8_J_0
J:18 [ILE] 0:1245 [C] H:25 [THR] A:1185 [U] ❌ 1VQ8_J_0
J:19 [MET] 0:1244 [U] H:26 [LEU] A:1184 [C] ❌ 1VQ8_J_0
J:20 [GLY] 0:1244 [U] H:27 [GLY] A:1184 [C] ❌ 1VQ8_J_0
J:21 [ARG] 0:1245 [C] H:28 [ARG] A:1185 [U] ❌ 1VQ8_J_0
J:24 [SER] 0:1242 [A] H:31 [SER] A:1182 [G] ❌ 1VQ8_J_0
J:31 [LEU] 0:1105 [C] H:38 [ARG] A:1052 [A] ❌ 1VQ8_J_0
J:47 [THR] 0:1245 [C] H:66 [THR] A:1185 [U] ❌ 1VQ8_J_0
J:48 [GLY] 0:1245 [C] H:67 [GLY] A:1185 [U] ❌ 1VQ8_J_0
J:57 [TYR] 0:1243 [C] H:75 [TYR] A:1183 [G] ❌ 1VQ8_J_0
J:61 [VAL] 0:2676 [C] H:77 [ARG] A:2667 [G] ❌ 1VQ8_J_0
J:63 [ILE] 0:2081 [A] H:78 [HIS] A:2067 [U] ❌ 1VQ8_J_0
J:64 [GLY] 0:2677 [A] H:79 [SER] A:2668 [A] ❌ 1VQ8_J_0
J:65 [ASN] 0:2082 [G] H:80 [ASN] A:2068 [U] ❌ 1VQ8_J_0
J:66 [ASP] 0:1235 [G] H:81 [HIS] A:1175 [G] ❌ 1VQ8_J_0
J:66 [ASP] 0:2677 [A] H:81 [HIS] A:2668 [A] ❌ 1VQ8_J_0
J:68 [GLY] 0:1235 [G] H:84 [GLY] A:1175 [G] ❌ 1VQ8_J_0
J:66 [ASP] 0:2654 [C] H:81 [HIS] A:2646 [U] ❌ 6S0Z_A:2646 no longer at interface
J:47 [THR] 0:1117 [A] H:66 [THR] A:1064 [A] ❌ 6S0Z_A:1064 no longer at interface
J:85 [GLY] 0:1240 [G] H:108 [GLY] A:1180 [G] ❌ 6S0Z_A:1180 no longer at interface
J:69 [TYR] 0:2080 [G] H:85 [ILE] A:2066 [G] ❌ 6S0Z_A:2066 no longer at interface
J:73 [LYS] 0:2804 [C] H:93 [LEU] A:2796 [C] ❌ 6S0Z_H:93, 6S0Z_A:2796 no longer at interface
J:84 [ARG] 0:2080 [G] H:107 [LYS] A:2066 [G] ❌ 6S0Z_H:107, 6S0Z_A:2066 no longer at interface
J:65 [ASN] 0:2066 [C] H:80 [ASN] A:2052 [C] ❌ 6S0Z_A:2052 no longer at interface
J:49 [ARG] 0:1118 [A] H:68 [ASN] A:1065 [A] ❌ 6S0Z_H:68, 6S0Z_A:1065 no longer at interface
J:86 [MET] 0:1240 [G] H:109 [MET] A:1180 [G] ❌ 6S0Z_A:1180 no longer at interface
J:92 [GLN] 0:613 [C] H:114 [ARG] A:599 [A] ❌ 1VQ8_0:613 no longer at interface
J:118 [GLY] 0:1110 [G] H:145 [GLY] A:1057 [A] ❌ 1VQ8_J:118, 1VQ8_0:1110 no longer at interface
J:31 [LEU] 0:1106 [A] H:38 [ARG] A:1053 [A] ❌ 1VQ8_0:1106 no longer at interface
J:64 [GLY] 0:2678 [A] H:79 [SER] A:2669 [G] ❌ 1VQ8_0:2678 no longer at interface
J:66 [ASP] 0:2678 [A] H:81 [HIS] A:2669 [G] ❌ 1VQ8_0:2678 no longer at interface
J:68 [GLY] 0:2678 [A] H:84 [GLY] A:2669 [G] ❌ 1VQ8_0:2678 no longer at interface
J:70 [PHE] 0:2678 [A] H:86 [LYS] A:2669 [G] ❌ 1VQ8_0:2678 no longer at interface
J:76 [ASP] 0:2815 [G] H:99 [GLU] A:2807 [G] ❌ 6S0Z_H:99 no longer at interface
J:104 [TYR] 0:2815 [G] H:126 [TYR] A:2807 [G] ❌ 6S0Z_H:126 no longer at interface
J:101 [VAL] 0:2815 [G] H:123 [LEU] A:2807 [G] ❌ 6S0Z_H:123 no longer at interface
J:73 [LYS] 0:2675 [A] H:93 [LEU] A:2666 [A] ❌ 6S0Z_H:93 no longer at interface
J:73 [LYS] 0:2676 [C] H:93 [LEU] A:2667 [G] ❌ 6S0Z_H:93 no longer at interface
J:73 [LYS] 0:2677 [A] H:93 [LEU] A:2668 [A] ❌ 6S0Z_H:93 no longer at interface
J:56 [LYS] 0:1236 [A] H:74 [VAL] A:1176 [U] ❌ 6S0Z_H:74 no longer at interface
J:56 [LYS] 0:1237 [U] H:74 [VAL] A:1177 [A] ❌ 6S0Z_H:74 no longer at interface
J:56 [LYS] 0:1242 [A] H:74 [VAL] A:1182 [G] ❌ 6S0Z_H:74 no longer at interface
J:72 [PRO] 0:2676 [C] H:88 [ILE] A:2667 [G] ❌ 6S0Z_H:88 no longer at interface
J:84 [ARG] 0:2081 [A] H:107 [LYS] A:2067 [U] ❌ 6S0Z_H:107 no longer at interface
J:84 [ARG] 0:2082 [G] H:107 [LYS] A:2068 [U] ❌ 6S0Z_H:107 no longer at interface
J:49 [ARG] 0:1119 [G] H:68 [ASN] A:1066 [G] ❌ 6S0Z_H:68 no longer at interface
J:49 [ARG] 0:1244 [U] H:68 [ASN] A:1184 [C] ❌ 6S0Z_H:68 no longer at interface
J:103 [VAL] 0:2815 [G] H:125 [VAL] A:2807 [G] ❌ 6S0Z_H:125 no longer at interface
J:71 [TYR] 0:1242 [A] H:87 [SER] A:1182 [G] ❌ 6S0Z_H:87 no longer at interface
J:71 [TYR] 0:2676 [C] H:87 [SER] A:2667 [G] ❌ 6S0Z_H:87 no longer at interface
J:71 [TYR] 0:2677 [A] H:87 [SER] A:2668 [A] ❌ 6S0Z_H:87 no longer at interface
J:46 [ILE] 0:1243 [C] H:65 [PHE] A:1183 [G] ❌ 6S0Z_H:65 no longer at interface
J:45 [VAL] 0:1243 [C] H:64 [GLU] A:1183 [G] ❌ 6S0Z_H:64 no longer at interface
J:77 [GLY] 0:2675 [A] H:100 [ARG] A:2666 [A] ❌ 1VQ8_J:77 no longer at interface
J:77 [GLY] 0:2676 [C] H:100 [ARG] A:2667 [G] ❌ 1VQ8_J:77 no longer at interface
J:117 [ASP] 0:1109 [U] H:144 [ARG] A:1056 [U] ❌ 1VQ8_J:117 no longer at interface
J:118 [GLY] 0:1109 [U] H:145 [GLY] A:1056 [U] ❌ 1VQ8_J:118 no longer at interface
J:53 [ILE] 0:1244 [U] H:73 [LYS] A:1184 [C] ❌ 1VQ8_J:53 no longer at interface
J:53 [ILE] 0:1243 [C] H:73 [LYS] A:1183 [G] ❌ 1VQ8_J:53 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A 0.92 3.37 0.22 0.63 0.93 0.61 0.74 0.39 0.36 0.17 0.38


Other pairs involving 1VQ8_J_0 or 6S0Z_H_A

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1N_1A 6S0Z_H_A 0.72 0.97 1.13 0.53 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1YHQ_J_0 6S0Z_H_A 0.39 0.92 3.38 0.22 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 7K00_i_a 0.87 0.97 1.27 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 7O7Y_BO_B5 0.37 0.88 4.74 0.17 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 7RYG_I_A 0.89 0.98 1.12 0.56 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 6YSI_F_1 0.89 0.98 1.14 0.59 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 7OF0_K_A 0.62 0.94 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7K00_i_a 0.39 0.9 3.4 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7O7Y_BO_B5 0.55 0.94 1.64 0.3 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7RYG_I_A 0.47 0.91 3.7 0.17 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6S0Z_H_A 0.39 0.92 3.37 0.22 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare
6AZ3_H_1 6S0Z_H_A 0.61 0.68 2.98 0.2 Ribosomal protein L13 and L16-A compare