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All interfaces > All interologs > Interface groups > group137 > 1VQ8_J_0 vs 7OF0_K_A

Interface analysis


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Common contacts -

1VQ8_J
1VQ8_0
7OF0_K
7OF0_A
Conserved?
J:83 [ILE] 0:1241 [G] K:108 [ILE] A:2238 [A] ✔
J:60 [ARG] 0:1236 [A] K:78 [SER] A:2235 [C] ✔
J:20 [GLY] 0:1242 [A] K:29 [GLY] A:2239 [A] ✔
J:20 [GLY] 0:1243 [C] K:29 [GLY] A:2240 [C] ✔
J:57 [TYR] 0:1242 [A] K:77 [TYR] A:2239 [A] ✔
J:47 [THR] 0:1244 [U] K:68 [SER] A:2241 [A] ✔
J:85 [GLY] 0:1240 [G] K:110 [GLY] A:2237 [A] ✔
J:85 [GLY] 0:1241 [G] K:110 [GLY] A:2238 [A] ✔
J:69 [TYR] 0:1235 [G] K:87 [PHE] A:2234 [C] ✔
J:69 [TYR] 0:1236 [A] K:87 [PHE] A:2235 [C] ✔
J:19 [MET] 0:1242 [A] K:28 [PRO] A:2239 [A] ✔
J:19 [MET] 0:1243 [C] K:28 [PRO] A:2240 [C] ✔
J:89 [HIS] 0:2081 [A] K:114 [LYS] A:2703 [C] ✔
J:91 [LYS] 0:615 [G] K:116 [LEU] A:1839 [C] ✔
J:18 [ILE] 0:1243 [C] K:27 [PRO] A:2240 [C] ✔
J:18 [ILE] 0:1244 [U] K:27 [PRO] A:2241 [A] ✔
J:56 [LYS] 0:1236 [A] K:76 [VAL] A:2235 [C] ✔
J:81 [ARG] 0:1241 [G] K:106 [LEU] A:2238 [A] ✔
J:90 [LYS] 0:535 [G] K:115 [ASN] A:1825 [A] ✔
J:90 [LYS] 0:2083 [A] K:115 [ASN] A:2705 [U] ✔
J:78 [ILE] 0:1242 [A] K:103 [ILE] A:2239 [A] ✔
J:92 [GLN] 0:614 [U] K:117 [HIS] A:1838 [C] ✔
J:21 [ARG] 0:1242 [A] K:30 [LYS] A:2239 [A] ✔
J:21 [ARG] 0:1243 [C] K:30 [LYS] A:2240 [C] ✔
J:21 [ARG] 0:1244 [U] K:30 [LYS] A:2241 [A] ✔
J:84 [ARG] 0:2081 [A] K:109 [TYR] A:2703 [C] ✔
J:84 [ARG] 0:2082 [G] K:109 [TYR] A:2704 [A] ✔
J:65 [ASN] 0:1235 [G] K:82 [GLY] A:2234 [C] ✔
J:82 [THR] 0:1241 [G] K:107 [ALA] A:2238 [A] ✔
J:82 [THR] 0:1242 [A] K:107 [ALA] A:2239 [A] ✔
J:46 [ILE] 0:1243 [C] K:67 [PHE] A:2240 [C] ✔
J:86 [MET] 0:1240 [G] K:111 [MET] A:2237 [A] ✔
J:86 [MET] 0:1241 [G] K:111 [MET] A:2238 [A] ✔
J:86 [MET] 0:1242 [A] K:111 [MET] A:2239 [A] ✔
J:63 [ILE] 0:1235 [G] K:80 [HIS] A:2234 [C] ✔
J:60 [ARG] 0:1241 [G] K:78 [SER] A:2238 [A] ❌ 7OF0_K_A
J:60 [ARG] 0:1242 [A] K:78 [SER] A:2239 [A] ❌ 7OF0_K_A
J:69 [TYR] 0:2080 [G] K:87 [PHE] A:2702 [G] ❌ 7OF0_K_A
J:69 [TYR] 0:2081 [A] K:87 [PHE] A:2703 [C] ❌ 7OF0_K_A
J:69 [TYR] 0:2082 [G] K:87 [PHE] A:2704 [A] ❌ 7OF0_K_A
J:91 [LYS] 0:616 [U] K:116 [LEU] A:1840 [C] ❌ 7OF0_K_A
J:56 [LYS] 0:1242 [A] K:76 [VAL] A:2239 [A] ❌ 7OF0_K_A
J:81 [ARG] 0:2081 [A] K:106 [LEU] A:2703 [C] ❌ 7OF0_K_A
J:81 [ARG] 0:2082 [G] K:106 [LEU] A:2704 [A] ❌ 7OF0_K_A
J:90 [LYS] 0:2081 [A] K:115 [ASN] A:2703 [C] ❌ 7OF0_K_A
J:90 [LYS] 0:2082 [G] K:115 [ASN] A:2704 [A] ❌ 7OF0_K_A
J:84 [ARG] 0:2080 [G] K:109 [TYR] A:2702 [G] ❌ 7OF0_K_A
J:71 [TYR] 0:1242 [A] K:89 [GLN] A:2239 [A] ❌ 7OF0_K_A
J:95 [ARG] 0:534 [C] K:119 [ARG] A:1824 [U] ❌ 7OF0_K_A
J:63 [ILE] 0:1236 [A] K:80 [HIS] A:2235 [C] ❌ 7OF0_K_A
J:81 [ARG] 0:1242 [A] K:106 [LEU] A:2239 [A] ❌ 1VQ8_J_0
J:85 [GLY] 0:2081 [A] K:110 [GLY] A:2703 [C] ❌ 1VQ8_J_0
J:88 [PRO] 0:616 [U] K:113 [PRO] A:1840 [C] ❌ 1VQ8_J_0
J:89 [HIS] 0:1240 [G] K:114 [LYS] A:2237 [A] ❌ 1VQ8_J_0
J:89 [HIS] 0:535 [G] K:114 [LYS] A:1825 [A] ❌ 1VQ8_J_0
J:89 [HIS] 0:616 [U] K:114 [LYS] A:1840 [C] ❌ 1VQ8_J_0
J:89 [HIS] 0:1241 [G] K:114 [LYS] A:2238 [A] ❌ 1VQ8_J_0
J:89 [HIS] 0:2080 [G] K:114 [LYS] A:2702 [G] ❌ 1VQ8_J_0
J:90 [LYS] 0:616 [U] K:115 [ASN] A:1840 [C] ❌ 1VQ8_J_0
J:90 [LYS] 0:615 [G] K:115 [ASN] A:1839 [C] ❌ 1VQ8_J_0
J:91 [LYS] 0:535 [G] K:116 [LEU] A:1825 [A] ❌ 1VQ8_J_0
J:91 [LYS] 0:534 [C] K:116 [LEU] A:1824 [U] ❌ 1VQ8_J_0
J:91 [LYS] 0:2083 [A] K:116 [LEU] A:2705 [U] ❌ 1VQ8_J_0
J:91 [LYS] 0:614 [U] K:116 [LEU] A:1838 [C] ❌ 1VQ8_J_0
J:92 [GLN] 0:615 [G] K:117 [HIS] A:1839 [C] ❌ 1VQ8_J_0
J:95 [ARG] 0:2082 [G] K:119 [ARG] A:2704 [A] ❌ 1VQ8_J_0
J:95 [ARG] 0:2081 [A] K:119 [ARG] A:2703 [C] ❌ 1VQ8_J_0
J:95 [ARG] 0:2083 [A] K:119 [ARG] A:2705 [U] ❌ 1VQ8_J_0
J:21 [ARG] 0:1245 [C] K:30 [LYS] A:2242 [U] ❌ 1VQ8_J_0
J:47 [THR] 0:1243 [C] K:68 [SER] A:2240 [C] ❌ 1VQ8_J_0
J:71 [TYR] 0:1236 [A] K:89 [GLN] A:2235 [C] ❌ 1VQ8_J_0
J:66 [ASP] 0:2654 [C] K:83 [TYR] A:3106 [C] ❌ 7OF0_A:3106 no longer at interface
J:60 [ARG] 0:1237 [U] K:78 [SER] A:2236 [C] ❌ 7OF0_A:2236 no longer at interface
J:47 [THR] 0:1117 [A] K:68 [SER] A:2158 [U] ❌ 7OF0_A:2158 no longer at interface
J:69 [TYR] 0:1237 [U] K:87 [PHE] A:2236 [C] ❌ 7OF0_A:2236 no longer at interface
J:56 [LYS] 0:1237 [U] K:76 [VAL] A:2236 [C] ❌ 7OF0_A:2236 no longer at interface
J:21 [ARG] 0:1246 [A] K:30 [LYS] A:2243 [A] ❌ 7OF0_A:2243 no longer at interface
J:65 [ASN] 0:2065 [C] K:82 [GLY] A:2687 [C] ❌ 7OF0_A:2687 no longer at interface
J:65 [ASN] 0:2066 [C] K:82 [GLY] A:2688 [C] ❌ 7OF0_A:2688 no longer at interface
J:95 [ARG] 0:2084 [C] K:119 [ARG] A:2706 [A] ❌ 1VQ8_0:2084 no longer at interface
J:63 [ILE] 0:1234 [U] K:80 [HIS] A:2233 [U] ❌ 1VQ8_0:1234 no longer at interface
J:66 [ASP] 0:2655 [U] K:83 [TYR] A:3107 [U] ❌ 1VQ8_0:2655 no longer at interface
J:66 [ASP] 0:2678 [A] K:83 [TYR] A:3109 [U] ❌ 1VQ8_0:2678 no longer at interface
J:52 [GLN] 0:1244 [U] K:74 [GLN] A:2241 [A] ❌ 7OF0_K:74 no longer at interface
J:73 [LYS] 0:2804 [C] K:95 [LEU] A:3200 [U] ❌ 7OF0_K:95 no longer at interface
J:48 [GLY] 0:1244 [U] K:69 [GLY] A:2241 [A] ❌ 7OF0_K:69 no longer at interface
J:68 [GLY] 0:2081 [A] K:86 [GLY] A:2703 [C] ❌ 7OF0_K:86 no longer at interface
J:68 [GLY] 0:2082 [G] K:86 [GLY] A:2704 [A] ❌ 7OF0_K:86 no longer at interface
J:122 [ASP] 0:1245 [C] K:152 [PRO] A:2242 [U] ❌ 7OF0_K:152 no longer at interface
J:70 [PHE] 0:2081 [A] K:88 [ARG] A:2703 [C] ❌ 7OF0_K:88 no longer at interface
J:70 [PHE] 0:2082 [G] K:88 [ARG] A:2704 [A] ❌ 7OF0_K:88 no longer at interface
J:64 [GLY] 0:1235 [G] K:81 [THR] A:2234 [C] ❌ 7OF0_K:81 no longer at interface
J:24 [SER] 0:1241 [G] K:33 [ALA] A:2238 [A] ❌ 7OF0_K:33 no longer at interface
J:49 [ARG] 0:1244 [U] K:70 [ASN] A:2241 [A] ❌ 7OF0_K:70 no longer at interface
J:45 [VAL] 0:1243 [C] K:66 [ALA] A:2240 [C] ❌ 7OF0_K:66 no longer at interface
J:94 [GLY] 0:2082 [G] K:118 [ARG] A:2704 [A] ❌ 1VQ8_J:94 no longer at interface
J:94 [GLY] 0:2080 [G] K:118 [ARG] A:2702 [G] ❌ 1VQ8_J:94 no longer at interface
J:94 [GLY] 0:2081 [A] K:118 [ARG] A:2703 [C] ❌ 1VQ8_J:94 no longer at interface
J:96 [GLU] 0:534 [C] K:120 [THR] A:1824 [U] ❌ 1VQ8_J:96 no longer at interface
J:119 [THR] 0:1244 [U] K:149 [ARG] A:2241 [A] ❌ 1VQ8_J:119 no longer at interface
J:53 [ILE] 0:1242 [A] K:75 [LYS] A:2239 [A] ❌ 1VQ8_J:53 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A 0.91 3.33 0.10 0.63 0.95 0.61 0.65 0.41 0.34 0.19 0.45


Other pairs involving 1VQ8_J_0 or 7OF0_K_A

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_J_0 7K00_i_a 0.39 0.9 3.4 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7O7Y_BO_B5 0.55 0.94 1.64 0.3 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7RYG_I_A 0.47 0.91 3.7 0.17 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6S0Z_H_A 0.39 0.92 3.37 0.22 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 7OF0_K_A 0.62 0.94 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7K00_i_a 7OF0_K_A 0.64 0.92 1.53 0.19 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7OF0_K_A 7RYG_I_A 0.65 0.91 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare