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All interfaces > All interologs > Interface groups > group137 > 1YHQ_J_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_J
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:18 [ILE] 0:1243 [C] 3.6 0:1121 [G] 84.45
J:18 [ILE] 0:1244 [U] 2.82 0:1118 [A] 84.45
J:19 [MET] 0:1242 [A] 4.53 0:1122 [U] 63.38
J:19 [MET] 0:1243 [C] 3.92 0:1121 [G] 63.38
J:20 [GLY] 0:1109 [U] 4.2 98.92
J:20 [GLY] 0:1242 [A] 2.99 0:1122 [U] 98.92
J:20 [GLY] 0:1243 [C] 2.84 0:1121 [G] 98.92
J:20 [GLY] 0:1247 [A] 3.49 98.92
J:21 [ARG] 0:1109 [U] 2.88 base:SC 98.97
J:21 [ARG] 0:1243 [C] 3.15 0:1121 [G] 98.97
J:21 [ARG] 0:1244 [U] 2.83 0:1118 [A] 98.97
J:21 [ARG] 0:1246 [A] 3.64 0:1116 [U] sugar:SC 98.97
J:21 [ARG] 0:1247 [A] 3.15 base/AA stacks 98.97
J:24 [SER] 0:1102 [C] 2.45 0:1241 [G] sugar:SC 87.2
J:24 [SER] 0:1103 [C] 3.03 0:1240 [G] sugar:SC 87.2
J:24 [SER] 0:1109 [U] 3.07 87.2
J:24 [SER] 0:1241 [G] 4.45 0:1102 [C] 87.2
J:24 [SER] 0:1247 [A] 4.14 87.2
J:25 [GLN] 0:1109 [U] 4.09 0.24
J:27 [ALA] 0:1103 [C] 3.43 0:1240 [G] 97.52
J:28 [GLU] 0:1103 [C] 4.3 0:1240 [G] 86.33
J:28 [GLU] 0:1104 [C] 3.81 0:1239 [G] 86.33
J:31 [LEU] 0:1103 [C] 4.51 0:1240 [G] 84.86
J:31 [LEU] 0:1104 [C] 3.3 0:1239 [G] 84.86
J:45 [VAL] 0:1243 [C] 4.54 0:1121 [G] 81.01
J:46 [ILE] 0:1243 [C] 4.15 0:1121 [G] 79.17
J:47 [THR] 0:1117 [A] 4.64 81.34
J:47 [THR] 0:1119 [G] 4.48 0:1120 [U] 81.34
J:47 [THR] 0:1244 [U] 3.07 0:1118 [A] 81.34
J:48 [GLY] 0:1244 [U] 3.62 0:1118 [A] 98.76
J:49 [ARG] 0:1118 [A] 4.27 0:1244 [U] 56.69
J:49 [ARG] 0:1119 [G] 2.76 0:1120 [U] 56.69
J:49 [ARG] 0:1244 [U] 4.62 0:1118 [A] 56.69
J:52 [GLN] 0:1119 [G] 2.86 0:1120 [U] 0.0
J:52 [GLN] 0:1244 [U] 4.51 0:1118 [A] 0.0
J:56 [LYS] 0:1236 [A] 4.04 39.37
J:56 [LYS] 0:1237 [U] 4.34 39.37
J:56 [LYS] 0:1241 [G] 4.87 0:1102 [C] 39.37
J:56 [LYS] 0:1242 [A] 3.09 0:1122 [U] base:SC 39.37
J:57 [TYR] 0:1242 [A] 4.12 0:1122 [U] 69.13
J:58 [GLU] 0:2802 [C] 3.61 0:2772 [G] sugar:SC 34.66
J:59 [LYS] 0:1235 [G] 4.53 5.92
J:59 [LYS] 0:1236 [A] 3.02 5.92
J:60 [ARG] 0:1236 [A] 2.92 base:SC 68.85
J:60 [ARG] 0:1237 [U] 4.88 68.85
J:60 [ARG] 0:1241 [G] 2.86 0:1102 [C] 68.85
J:60 [ARG] 0:1242 [A] 2.46 0:1122 [U] 68.85
J:61 [VAL] 0:2677 [A] 4.32 0:2808 [U] 38.23
J:62 [ASP] 0:2803 [C] 4.85 0:2771 [G] 8.94
J:63 [ILE] 0:1235 [G] 3.33 51.01
J:63 [ILE] 0:1236 [A] 3.07 51.01
J:64 [GLY] 0:1235 [G] 3.63 sugar:BB 60.82
J:65 [ASN] 0:1234 [U] 4.95 54.69
J:65 [ASN] 0:1235 [G] 3.28 base:SC 54.69
J:65 [ASN] 0:2065 [C] 3.3 0:2080 [G] 54.69
J:65 [ASN] 0:2066 [C] 3.59 0:2079 [G] 54.69
J:66 [ASP] 0:2654 [C] 4.11 0:2090 [G] 39.42
J:66 [ASP] 0:2655 [U] 4.68 0:2089 [A] 39.42
J:67 [ASN] 0:2064 [U] 3.1 0:2081 [A] base:SC 49.54
J:67 [ASN] 0:2065 [C] 3.22 0:2080 [G] base/AA stacks 49.54
J:67 [ASN] 0:2081 [A] 3.61 0:2064 [U] 49.54
J:67 [ASN] 0:2082 [G] 2.96 0:535 [G] sugar:BB 49.54
J:67 [ASN] 0:2654 [C] 4.77 0:2090 [G] 49.54
J:68 [GLY] 0:2081 [A] 2.73 0:2064 [U] sugar:BB 90.46
J:68 [GLY] 0:2082 [G] 3.35 0:535 [G] 90.46
J:69 [TYR] 0:1235 [G] 3.6 base/AA stacks 92.15
J:69 [TYR] 0:1236 [A] 3.06 92.15
J:69 [TYR] 0:1237 [U] 4.43 92.15
J:69 [TYR] 0:2080 [G] 4.33 0:2065 [C] 92.15
J:69 [TYR] 0:2081 [A] 3.13 0:2064 [U] 92.15
J:69 [TYR] 0:2082 [G] 4.37 0:535 [G] 92.15
J:69 [TYR] 0:2677 [A] 4.95 0:2808 [U] 92.15
J:70 [PHE] 0:2081 [A] 4.54 0:2064 [U] 52.51
J:70 [PHE] 0:2082 [G] 3.33 0:535 [G] 52.51
J:70 [PHE] 0:2675 [A] 4.05 0:2810 [G] 52.51
J:70 [PHE] 0:2676 [C] 3.16 0:2809 [G] 52.51
J:70 [PHE] 0:2677 [A] 4.94 0:2808 [U] 52.51
J:71 [TYR] 0:1242 [A] 4.08 0:1122 [U] 50.97
J:71 [TYR] 0:2676 [C] 4.34 0:2809 [G] 50.97
J:71 [TYR] 0:2677 [A] 4.52 0:2808 [U] 50.97
J:72 [PRO] 0:2676 [C] 3.6 0:2809 [G] 68.51
J:73 [LYS] 0:2676 [C] 2.64 0:2809 [G] 83.39
J:73 [LYS] 0:2677 [A] 3.33 0:2808 [U] 83.39
J:73 [LYS] 0:2804 [C] 4.63 0:2770 [G] 83.39
J:74 [ARG] 0:2675 [A] 4.12 0:2810 [G] 55.6
J:74 [ARG] 0:2676 [C] 3.1 0:2809 [G] 55.6
J:76 [ASP] 0:2815 [G] 4.82 75.32
J:78 [ILE] 0:1242 [A] 4.81 0:1122 [U] 77.6
J:80 [LYS] 0:2815 [G] 2.83 base:SC, base:SC 81.02
J:81 [ARG] 0:1241 [G] 4.59 0:1102 [C] 86.89
J:81 [ARG] 0:2081 [A] 4.58 0:2064 [U] 86.89
J:81 [ARG] 0:2082 [G] 3.2 0:535 [G] 86.89
J:82 [THR] 0:1241 [G] 2.66 0:1102 [C] sugar:BB 64.26
J:82 [THR] 0:1242 [A] 3.11 0:1122 [U] 64.26
J:83 [ILE] 0:1241 [G] 4.87 0:1102 [C] 81.9
J:84 [ARG] 0:2081 [A] 2.77 0:2064 [U] 86.78
J:84 [ARG] 0:2082 [G] 2.94 0:535 [G] 86.78
J:85 [GLY] 0:1103 [C] 4.39 0:1240 [G] 88.66
J:85 [GLY] 0:1104 [C] 4.8 0:1239 [G] 88.66
J:85 [GLY] 0:1240 [G] 2.83 0:1103 [C] base:BB 88.66
J:85 [GLY] 0:1241 [G] 3.25 0:1102 [C] 88.66
J:86 [MET] 0:1103 [C] 2.73 0:1240 [G] sugar:BB 99.0
J:86 [MET] 0:1104 [C] 3.07 0:1239 [G] 99.0
J:86 [MET] 0:1240 [G] 4.2 0:1103 [C] 99.0
J:86 [MET] 0:1241 [G] 3.29 0:1102 [C] 99.0
J:86 [MET] 0:1242 [A] 3.96 0:1122 [U] 99.0
J:86 [MET] 0:1247 [A] 4.93 99.0
J:87 [LEU] 0:1103 [C] 4.89 0:1240 [G] 83.32
J:87 [LEU] 0:1104 [C] 3.88 0:1239 [G] 83.32
J:88 [PRO] 0:1104 [C] 3.42 0:1239 [G] 89.93
J:88 [PRO] 0:1105 [C] 3.81 0:1106 [A] 89.93
J:89 [HIS] 0:2081 [A] 3.33 0:2064 [U] 12.43
J:90 [LYS] 0:535 [G] 3.78 0:2082 [G] 67.25
J:90 [LYS] 0:2081 [A] 3.38 0:2064 [U] 67.25
J:90 [LYS] 0:2082 [G] 3.1 0:535 [G] base:SC, base:SC 67.25
J:90 [LYS] 0:2083 [A] 3.31 0:2063 [U] 67.25
J:91 [LYS] 0:615 [G] 3.02 0:541 [C] 50.11
J:91 [LYS] 0:616 [U] 3.74 0:540 [A] 50.11
J:92 [GLN] 0:613 [C] 4.47 0:543 [G] 19.6
J:92 [GLN] 0:614 [U] 3.99 0:542 [A] 19.6
J:93 [ARG] 0:1104 [C] 4.9 0:1239 [G] 73.19
J:93 [ARG] 0:1105 [C] 3.59 0:1106 [A] 73.19
J:95 [ARG] 0:533 [U] 2.85 sugar:SC, sugar:SC 64.54
J:95 [ARG] 0:534 [C] 3.72 64.54
J:95 [ARG] 0:2814 [A] 3.09 sugar:SC 64.54
J:99 [GLU] 0:2814 [A] 3.23 53.7
J:99 [GLU] 0:2815 [G] 3.16 53.7
J:101 [VAL] 0:2815 [G] 4.49 78.62
J:102 [ARG] 0:2815 [G] 3.16 base/AA stacks 64.72
J:103 [VAL] 0:2815 [G] 2.83 base:BB, base:BB 79.97
J:104 [TYR] 0:2815 [G] 3.53 base/AA stacks 65.07
J:122 [ASP] 0:1245 [C] 4.86 39.27
J:125 [SER] 0:1245 [C] 4.15 5.95
J:126 [ASN] 0:1244 [U] 4.73 0:1118 [A] 49.85
J:126 [ASN] 0:1245 [C] 4.45 49.85
J:127 [ILE] 0:2793 [A] 3.54 0:2791 [U] 3.23
J:128 [LYS] 0:1117 [A] 2.79 sugar:SC 55.87
J:128 [LYS] 0:1118 [A] 2.91 0:1244 [U] 55.87
J:137 [GLU] 0:2803 [C] 4.53 0:2771 [G] 62.0
J:138 [THR] 0:2803 [C] 4.33 0:2771 [G] 0.21
J:139 [LEU] 0:2803 [C] 4.16 0:2771 [G] 71.29
J:139 [LEU] 0:2804 [C] 4.96 0:2770 [G] 71.29
J:140 [GLY] 0:2803 [C] 3.35 0:2771 [G] 90.77
J:140 [GLY] 0:2804 [C] 3.75 0:2770 [G] 90.77

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 1YHQ_J_0 J: 50s ribosomal protein l13p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P29198 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6AZ3_H_1 0.54 0.75 1.56 0.29 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7RYG_I_A 0.48 0.91 3.68 0.19 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6S0Z_H_A 0.39 0.92 3.38 0.22 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7K00_i_a 0.39 0.9 3.39 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7O7Y_BO_B5 0.54 0.94 1.64 0.31 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare