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All interfaces > All interologs > Interface groups > group137 > 1YHQ_J_0 vs 6AZ3_H_1

Interface analysis


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Common contacts -

1YHQ_J
1YHQ_0
6AZ3_H
6AZ3_1
Conserved?
J:31 [LEU] 0:1103 [C] H:46 [LEU] 1:1232 [U] ✔
J:31 [LEU] 0:1104 [C] H:46 [LEU] 1:1233 [C] ✔
J:20 [GLY] 0:1109 [U] H:35 [GLY] 1:1239 [U] ✔
J:20 [GLY] 0:1242 [A] H:35 [GLY] 1:1375 [G] ✔
J:20 [GLY] 0:1243 [C] H:35 [GLY] 1:1376 [C] ✔
J:20 [GLY] 0:1247 [A] H:35 [GLY] 1:1380 [A] ✔
J:47 [THR] 0:1244 [U] H:62 [ALA] 1:1377 [U] ✔
J:85 [GLY] 0:1103 [C] H:104 [SER] 1:1232 [U] ✔
J:85 [GLY] 0:1240 [G] H:104 [SER] 1:1373 [A] ✔
J:85 [GLY] 0:1241 [G] H:104 [SER] 1:1374 [C] ✔
J:69 [TYR] 0:1235 [G] H:88 [PRO] 1:1368 [G] ✔
J:69 [TYR] 0:1236 [A] H:88 [PRO] 1:1369 [G] ✔
J:19 [MET] 0:1242 [A] H:34 [LEU] 1:1375 [G] ✔
J:19 [MET] 0:1243 [C] H:34 [LEU] 1:1376 [C] ✔
J:87 [LEU] 0:1103 [C] H:106 [LEU] 1:1232 [U] ✔
J:87 [LEU] 0:1104 [C] H:106 [LEU] 1:1233 [C] ✔
J:91 [LYS] 0:615 [G] H:110 [THR] 1:664 [C] ✔
J:91 [LYS] 0:616 [U] H:110 [THR] 1:665 [C] ✔
J:18 [ILE] 0:1243 [C] H:33 [VAL] 1:1376 [C] ✔
J:18 [ILE] 0:1244 [U] H:33 [VAL] 1:1377 [U] ✔
J:28 [GLU] 0:1103 [C] H:43 [LYS] 1:1232 [U] ✔
J:28 [GLU] 0:1104 [C] H:43 [LYS] 1:1233 [C] ✔
J:52 [GLN] 0:1119 [G] H:67 [ARG] 1:1253 [OMU] ✔
J:52 [GLN] 0:1244 [U] H:67 [ARG] 1:1377 [U] ✔
J:81 [ARG] 0:1241 [G] H:100 [ARG] 1:1374 [C] ✔
J:93 [ARG] 0:1104 [C] H:112 [ARG] 1:1233 [C] ✔
J:93 [ARG] 0:1105 [C] H:112 [ARG] 1:1234 [A] ✔
J:122 [ASP] 0:1245 [C] H:145 [HIS] 1:1378 [U] ✔
J:88 [PRO] 0:1104 [C] H:107 [PRO] 1:1233 [C] ✔
J:88 [PRO] 0:1105 [C] H:107 [PRO] 1:1234 [A] ✔
J:92 [GLN] 0:613 [C] H:111 [LYS] 1:662 [C] ✔
J:92 [GLN] 0:614 [U] H:111 [LYS] 1:663 [C] ✔
J:64 [GLY] 0:1235 [G] H:79 [ARG] 1:1368 [G] ✔
J:27 [ALA] 0:1103 [C] H:42 [ALA] 1:1232 [U] ✔
J:24 [SER] 0:1102 [C] H:39 [ALA] 1:1231 [G] ✔
J:24 [SER] 0:1103 [C] H:39 [ALA] 1:1232 [U] ✔
J:24 [SER] 0:1109 [U] H:39 [ALA] 1:1239 [U] ✔
J:24 [SER] 0:1247 [A] H:39 [ALA] 1:1380 [A] ✔
J:25 [GLN] 0:1109 [U] H:40 [VAL] 1:1239 [U] ✔
J:21 [ARG] 0:1109 [U] H:36 [ARG] 1:1239 [U] ✔
J:21 [ARG] 0:1243 [C] H:36 [ARG] 1:1376 [C] ✔
J:21 [ARG] 0:1244 [U] H:36 [ARG] 1:1377 [U] ✔
J:21 [ARG] 0:1246 [A] H:36 [ARG] 1:1379 [A] ✔
J:21 [ARG] 0:1247 [A] H:36 [ARG] 1:1380 [A] ✔
J:59 [LYS] 0:1236 [A] H:74 [GLN] 1:1369 [G] ✔
J:65 [ASN] 0:1235 [G] H:80 [LYS] 1:1368 [G] ✔
J:82 [THR] 0:1241 [G] H:101 [THR] 1:1374 [C] ✔
J:82 [THR] 0:1242 [A] H:101 [THR] 1:1375 [G] ✔
J:46 [ILE] 0:1243 [C] H:61 [ILE] 1:1376 [C] ✔
J:45 [VAL] 0:1243 [C] H:60 [ASN] 1:1376 [C] ✔
J:86 [MET] 0:1103 [C] H:105 [MET] 1:1232 [U] ✔
J:86 [MET] 0:1104 [C] H:105 [MET] 1:1233 [C] ✔
J:86 [MET] 0:1241 [G] H:105 [MET] 1:1374 [C] ✔
J:86 [MET] 0:1242 [A] H:105 [MET] 1:1375 [G] ✔
J:63 [ILE] 0:1235 [G] H:78 [LYS] 1:1368 [G] ✔
J:63 [ILE] 0:1236 [A] H:78 [LYS] 1:1369 [G] ✔
J:47 [THR] 0:1117 [A] H:62 [ALA] 1:1248 [C] ❌ 6AZ3_H_1
J:47 [THR] 0:1119 [G] H:62 [ALA] 1:1253 [OMU] ❌ 6AZ3_H_1
J:85 [GLY] 0:1104 [C] H:104 [SER] 1:1233 [C] ❌ 6AZ3_H_1
J:56 [LYS] 0:1236 [A] H:71 [LYS] 1:1369 [G] ❌ 6AZ3_H_1
J:56 [LYS] 0:1241 [G] H:71 [LYS] 1:1374 [C] ❌ 6AZ3_H_1
J:56 [LYS] 0:1242 [A] H:71 [LYS] 1:1375 [G] ❌ 6AZ3_H_1
J:24 [SER] 0:1241 [G] H:39 [ALA] 1:1374 [C] ❌ 6AZ3_H_1
J:59 [LYS] 0:1235 [G] H:74 [GLN] 1:1368 [G] ❌ 6AZ3_H_1
J:65 [ASN] 0:1234 [U] H:80 [LYS] 1:1367 [U] ❌ 6AZ3_H_1
J:49 [ARG] 0:1118 [A] H:64 [THR] 1:1249 [A] ❌ 6AZ3_H_1
J:49 [ARG] 0:1119 [G] H:64 [THR] 1:1253 [OMU] ❌ 6AZ3_H_1
J:49 [ARG] 0:1244 [U] H:64 [THR] 1:1377 [U] ❌ 6AZ3_H_1
J:86 [MET] 0:1240 [G] H:105 [MET] 1:1373 [A] ❌ 6AZ3_H_1
J:86 [MET] 0:1247 [A] H:105 [MET] 1:1380 [A] ❌ 6AZ3_H_1
J:81 [ARG] 0:1242 [A] H:100 [ARG] 1:1375 [G] ❌ 1YHQ_J_0
J:86 [MET] 0:1102 [C] H:105 [MET] 1:1231 [G] ❌ 1YHQ_J_0
J:92 [GLN] 0:615 [G] H:111 [LYS] 1:664 [C] ❌ 1YHQ_J_0
J:92 [GLN] 0:533 [U] H:111 [LYS] 1:461 [G] ❌ 1YHQ_J_0
J:93 [ARG] 0:615 [G] H:112 [ARG] 1:664 [C] ❌ 1YHQ_J_0
J:93 [ARG] 0:614 [U] H:112 [ARG] 1:663 [C] ❌ 1YHQ_J_0
J:93 [ARG] 0:616 [U] H:112 [ARG] 1:665 [C] ❌ 1YHQ_J_0
J:127 [ILE] 0:1245 [C] H:152 [ARG] 1:1378 [U] ❌ 1YHQ_J_0
J:127 [ILE] 0:1244 [U] H:152 [ARG] 1:1377 [U] ❌ 1YHQ_J_0
J:127 [ILE] 0:1117 [A] H:152 [ARG] 1:1248 [C] ❌ 1YHQ_J_0
J:21 [ARG] 0:1242 [A] H:36 [ARG] 1:1375 [G] ❌ 1YHQ_J_0
J:52 [GLN] 0:1118 [A] H:67 [ARG] 1:1249 [A] ❌ 1YHQ_J_0
J:56 [LYS] 0:1119 [G] H:71 [LYS] 1:1253 [OMU] ❌ 1YHQ_J_0
J:59 [LYS] 0:1119 [G] H:74 [GLN] 1:1253 [OMU] ❌ 1YHQ_J_0
J:62 [ASP] 0:1236 [A] H:77 [ARG] 1:1369 [G] ❌ 1YHQ_J_0
J:62 [ASP] 0:1235 [G] H:77 [ARG] 1:1368 [G] ❌ 1YHQ_J_0
J:63 [ILE] 0:1119 [G] H:78 [LYS] 1:1253 [OMU] ❌ 1YHQ_J_0
J:60 [ARG] 0:1237 [U] H:75 [TYR] 1:1370 [A] ❌ 6AZ3_H:75, 6AZ3_1:1370 no longer at interface
J:69 [TYR] 0:1237 [U] H:88 [PRO] 1:1370 [A] ❌ 6AZ3_1:1370 no longer at interface
J:56 [LYS] 0:1237 [U] H:71 [LYS] 1:1370 [A] ❌ 6AZ3_1:1370 no longer at interface
J:90 [LYS] 0:535 [G] H:109 [TYR] 1:463 [C] ❌ 6AZ3_H:109, 6AZ3_1:463 no longer at interface
J:95 [ARG] 0:534 [C] H:114 [MET] 1:462 [A] ❌ 6AZ3_H:114, 6AZ3_1:462 no longer at interface
J:92 [GLN] 0:531 [G] H:111 [LYS] 1:460 [A] ❌ 1YHQ_0:531 no longer at interface
J:93 [ARG] 0:1106 [A] H:112 [ARG] 1:1235 [A] ❌ 1YHQ_0:1106 no longer at interface
J:127 [ILE] 0:1116 [U] H:152 [ARG] 1:1247 [U] ❌ 1YHQ_0:1116 no longer at interface
J:28 [GLU] 0:1106 [A] H:43 [LYS] 1:1235 [A] ❌ 1YHQ_0:1106 no longer at interface
J:52 [GLN] 0:1120 [U] H:67 [ARG] 1:1254 [C] ❌ 1YHQ_0:1120 no longer at interface
J:83 [ILE] 0:1241 [G] H:102 [VAL] 1:1374 [C] ❌ 6AZ3_H:102 no longer at interface
J:60 [ARG] 0:1236 [A] H:75 [TYR] 1:1369 [G] ❌ 6AZ3_H:75 no longer at interface
J:60 [ARG] 0:1241 [G] H:75 [TYR] 1:1374 [C] ❌ 6AZ3_H:75 no longer at interface
J:60 [ARG] 0:1242 [A] H:75 [TYR] 1:1375 [G] ❌ 6AZ3_H:75 no longer at interface
J:57 [TYR] 0:1242 [A] H:72 [TYR] 1:1375 [G] ❌ 6AZ3_H:72 no longer at interface
J:128 [LYS] 0:1117 [A] H:153 [PRO] 1:1248 [C] ❌ 6AZ3_H:153 no longer at interface
J:128 [LYS] 0:1118 [A] H:153 [PRO] 1:1249 [A] ❌ 6AZ3_H:153 no longer at interface
J:48 [GLY] 0:1244 [U] H:63 [GLY] 1:1377 [U] ❌ 6AZ3_H:63 no longer at interface
J:78 [ILE] 0:1242 [A] H:97 [VAL] 1:1375 [G] ❌ 6AZ3_H:97 no longer at interface
J:125 [SER] 0:1245 [C] H:150 [SER] 1:1378 [U] ❌ 6AZ3_H:150 no longer at interface
J:71 [TYR] 0:1242 [A] H:90 [HIS] 1:1375 [G] ❌ 6AZ3_H:90 no longer at interface
J:126 [ASN] 0:1244 [U] H:151 [GLU] 1:1377 [U] ❌ 6AZ3_H:151 no longer at interface
J:126 [ASN] 0:1245 [C] H:151 [GLU] 1:1378 [U] ❌ 6AZ3_H:151 no longer at interface
J:95 [ARG] 0:533 [U] H:114 [MET] 1:461 [G] ❌ 6AZ3_H:114 no longer at interface
J:118 [GLY] 0:1109 [U] H:141 [ARG] 1:1239 [U] ❌ 1YHQ_J:118 no longer at interface
J:123 [ARG] 0:1245 [C] H:148 [TYR] 1:1378 [U] ❌ 1YHQ_J:123 no longer at interface
J:123 [ARG] 0:1243 [C] H:148 [TYR] 1:1376 [C] ❌ 1YHQ_J:123 no longer at interface
J:123 [ARG] 0:1244 [U] H:148 [TYR] 1:1377 [U] ❌ 1YHQ_J:123 no longer at interface
J:124 [LEU] 0:1245 [C] H:149 [ARG] 1:1378 [U] ❌ 1YHQ_J:124 no longer at interface
J:124 [LEU] 0:1246 [A] H:149 [ARG] 1:1379 [A] ❌ 1YHQ_J:124 no longer at interface
J:55 [GLU] 0:1119 [G] H:70 [ILE] 1:1253 [OMU] ❌ 1YHQ_J:55 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A 0.75 1.56 0.29 0.9 0.76 0.8 0.75 0.54 0.59 0.25 0.50


Other pairs involving 1YHQ_J_0 or 6AZ3_H_1

Total number of entries: 16

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1N_1A 6AZ3_H_1 0.56 0.68 2.95 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6AZ3_H_1 0.54 0.75 1.56 0.29 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7RYG_I_A 0.48 0.91 3.68 0.19 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6S0Z_H_A 0.39 0.92 3.38 0.22 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7K00_i_a 0.39 0.9 3.39 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7O7Y_BO_B5 0.54 0.94 1.64 0.31 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare
6AZ3_H_1 7O7Y_BO_B5 0.85 0.91 1.03 0.56 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare
6AZ3_H_1 6S0Z_H_A 0.61 0.68 2.98 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 7K00_i_a 0.59 0.67 2.72 0.17 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 7RYG_I_A 0.58 0.66 3.27 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare