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All interfaces > All interologs > Interface groups > group137 > 1YHQ_J_0 vs 6YSI_F_1

Interface analysis


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Common contacts -

1YHQ_J
1YHQ_0
6YSI_F
6YSI_1
Conserved?
J:31 [LEU] 0:1103 [C] F:37 [ARG] 1:996 [C] ✔
J:31 [LEU] 0:1104 [C] F:37 [ARG] 1:997 [C] ✔
J:66 [ASP] 0:2655 [U] F:80 [PHE] 1:2609 [C] ✔
J:83 [ILE] 0:1241 [G] F:105 [VAL] 1:1128 [G] ✔
J:60 [ARG] 0:1236 [A] F:75 [TYR] 1:1122 [U] ✔
J:20 [GLY] 0:1109 [U] F:26 [GLY] 1:1002 [U] ✔
J:20 [GLY] 0:1242 [A] F:26 [GLY] 1:1129 [G] ✔
J:20 [GLY] 0:1243 [C] F:26 [GLY] 1:1130 [C] ✔
J:20 [GLY] 0:1247 [A] F:26 [GLY] 1:1134 [A] ✔
J:57 [TYR] 0:1242 [A] F:74 [TYR] 1:1129 [G] ✔
J:47 [THR] 0:1119 [G] F:65 [THR] 1:1012 [G] ✔
J:47 [THR] 0:1244 [U] F:65 [THR] 1:1131 [U] ✔
J:85 [GLY] 0:1103 [C] F:107 [GLY] 1:996 [C] ✔
J:85 [GLY] 0:1104 [C] F:107 [GLY] 1:997 [C] ✔
J:85 [GLY] 0:1240 [G] F:107 [GLY] 1:1127 [G] ✔
J:85 [GLY] 0:1241 [G] F:107 [GLY] 1:1128 [G] ✔
J:69 [TYR] 0:1235 [G] F:84 [LEU] 1:1121 [G] ✔
J:69 [TYR] 0:1236 [A] F:84 [LEU] 1:1122 [U] ✔
J:19 [MET] 0:1242 [A] F:25 [LEU] 1:1129 [G] ✔
J:19 [MET] 0:1243 [C] F:25 [LEU] 1:1130 [C] ✔
J:87 [LEU] 0:1103 [C] F:109 [LEU] 1:996 [C] ✔
J:87 [LEU] 0:1104 [C] F:109 [LEU] 1:997 [C] ✔
J:91 [LYS] 0:615 [G] F:113 [PRO] 1:549 [U] ✔
J:18 [ILE] 0:1243 [C] F:24 [THR] 1:1130 [C] ✔
J:18 [ILE] 0:1244 [U] F:24 [THR] 1:1131 [U] ✔
J:28 [GLU] 0:1103 [C] F:34 [ARG] 1:996 [C] ✔
J:52 [GLN] 0:1119 [G] F:71 [ASP] 1:1012 [G] ✔
J:81 [ARG] 0:1241 [G] F:103 [ARG] 1:1128 [G] ✔
J:48 [GLY] 0:1244 [U] F:66 [GLY] 1:1131 [U] ✔
J:90 [LYS] 0:535 [G] F:112 [GLY] 1:521 [A] ✔
J:88 [PRO] 0:1104 [C] F:110 [PRO] 1:997 [C] ✔
J:88 [PRO] 0:1105 [C] F:110 [PRO] 1:998 [A] ✔
J:78 [ILE] 0:1242 [A] F:100 [ILE] 1:1129 [G] ✔
J:92 [GLN] 0:614 [U] F:114 [LEU] 1:548 [C] ✔
J:70 [PHE] 0:2677 [A] F:85 [LYS] 1:2630 [A] ✔
J:80 [LYS] 0:2815 [G] F:102 [GLU] 1:2769 [A] ✔
J:61 [VAL] 0:2677 [A] F:76 [ARG] 1:2630 [A] ✔
J:27 [ALA] 0:1103 [C] F:33 [ALA] 1:996 [C] ✔
J:99 [GLU] 0:2815 [G] F:120 [LYS] 1:2769 [A] ✔
J:24 [SER] 0:1102 [C] F:30 [THR] 1:995 [C] ✔
J:24 [SER] 0:1103 [C] F:30 [THR] 1:996 [C] ✔
J:24 [SER] 0:1109 [U] F:30 [THR] 1:1002 [U] ✔
J:24 [SER] 0:1241 [G] F:30 [THR] 1:1128 [G] ✔
J:24 [SER] 0:1247 [A] F:30 [THR] 1:1134 [A] ✔
J:74 [ARG] 0:2675 [A] F:96 [LYS] 1:2628 [A] ✔
J:74 [ARG] 0:2676 [C] F:96 [LYS] 1:2629 [G] ✔
J:21 [ARG] 0:1109 [U] F:27 [ARG] 1:1002 [U] ✔
J:21 [ARG] 0:1243 [C] F:27 [ARG] 1:1130 [C] ✔
J:21 [ARG] 0:1244 [U] F:27 [ARG] 1:1131 [U] ✔
J:21 [ARG] 0:1246 [A] F:27 [ARG] 1:1133 [A] ✔
J:21 [ARG] 0:1247 [A] F:27 [ARG] 1:1134 [A] ✔
J:84 [ARG] 0:2081 [A] F:106 [LYS] 1:2029 [G] ✔
J:84 [ARG] 0:2082 [G] F:106 [LYS] 1:2030 [U] ✔
J:65 [ASN] 0:1235 [G] F:79 [GLU] 1:1121 [G] ✔
J:82 [THR] 0:1241 [G] F:104 [ALA] 1:1128 [G] ✔
J:82 [THR] 0:1242 [A] F:104 [ALA] 1:1129 [G] ✔
J:49 [ARG] 0:1244 [U] F:67 [ASN] 1:1131 [U] ✔
J:46 [ILE] 0:1243 [C] F:64 [VAL] 1:1130 [C] ✔
J:45 [VAL] 0:1243 [C] F:63 [GLN] 1:1130 [C] ✔
J:86 [MET] 0:1103 [C] F:108 [MET] 1:996 [C] ✔
J:86 [MET] 0:1104 [C] F:108 [MET] 1:997 [C] ✔
J:86 [MET] 0:1240 [G] F:108 [MET] 1:1127 [G] ✔
J:86 [MET] 0:1241 [G] F:108 [MET] 1:1128 [G] ✔
J:86 [MET] 0:1242 [A] F:108 [MET] 1:1129 [G] ✔
J:95 [ARG] 0:534 [C] F:116 [TYR] 1:520 [A] ✔
J:63 [ILE] 0:1235 [G] F:77 [HIS] 1:1121 [G] ✔
J:60 [ARG] 0:1241 [G] F:75 [TYR] 1:1128 [G] ❌ 6YSI_F_1
J:60 [ARG] 0:1242 [A] F:75 [TYR] 1:1129 [G] ❌ 6YSI_F_1
J:47 [THR] 0:1117 [A] F:65 [THR] 1:1010 [A] ❌ 6YSI_F_1
J:69 [TYR] 0:2080 [G] F:84 [LEU] 1:2028 [U] ❌ 6YSI_F_1
J:69 [TYR] 0:2081 [A] F:84 [LEU] 1:2029 [G] ❌ 6YSI_F_1
J:69 [TYR] 0:2082 [G] F:84 [LEU] 1:2030 [U] ❌ 6YSI_F_1
J:69 [TYR] 0:2677 [A] F:84 [LEU] 1:2630 [A] ❌ 6YSI_F_1
J:89 [HIS] 0:2081 [A] F:111 [LYS] 1:2029 [G] ❌ 6YSI_F_1
J:28 [GLU] 0:1104 [C] F:34 [ARG] 1:997 [C] ❌ 6YSI_F_1
J:52 [GLN] 0:1244 [U] F:71 [ASP] 1:1131 [U] ❌ 6YSI_F_1
J:81 [ARG] 0:2081 [A] F:103 [ARG] 1:2029 [G] ❌ 6YSI_F_1
J:81 [ARG] 0:2082 [G] F:103 [ARG] 1:2030 [U] ❌ 6YSI_F_1
J:68 [GLY] 0:2081 [A] F:83 [GLY] 1:2029 [G] ❌ 6YSI_F_1
J:68 [GLY] 0:2082 [G] F:83 [GLY] 1:2030 [U] ❌ 6YSI_F_1
J:102 [ARG] 0:2815 [G] F:123 [LYS] 1:2769 [A] ❌ 6YSI_F_1
J:90 [LYS] 0:2081 [A] F:112 [GLY] 1:2029 [G] ❌ 6YSI_F_1
J:90 [LYS] 0:2082 [G] F:112 [GLY] 1:2030 [U] ❌ 6YSI_F_1
J:90 [LYS] 0:2083 [A] F:112 [GLY] 1:2031 [A] ❌ 6YSI_F_1
J:92 [GLN] 0:613 [C] F:114 [LEU] 1:547 [A] ❌ 6YSI_F_1
J:70 [PHE] 0:2081 [A] F:85 [LYS] 1:2029 [G] ❌ 6YSI_F_1
J:70 [PHE] 0:2082 [G] F:85 [LYS] 1:2030 [U] ❌ 6YSI_F_1
J:70 [PHE] 0:2675 [A] F:85 [LYS] 1:2628 [A] ❌ 6YSI_F_1
J:70 [PHE] 0:2676 [C] F:85 [LYS] 1:2629 [G] ❌ 6YSI_F_1
J:64 [GLY] 0:1235 [G] F:78 [THR] 1:1121 [G] ❌ 6YSI_F_1
J:65 [ASN] 0:1234 [U] F:79 [GLU] 1:1120 [U] ❌ 6YSI_F_1
J:49 [ARG] 0:1119 [G] F:67 [ASN] 1:1012 [G] ❌ 6YSI_F_1
J:86 [MET] 0:1247 [A] F:108 [MET] 1:1134 [A] ❌ 6YSI_F_1
J:63 [ILE] 0:1236 [A] F:77 [HIS] 1:1122 [U] ❌ 6YSI_F_1
J:81 [ARG] 0:1242 [A] F:103 [ARG] 1:1129 [G] ❌ 1YHQ_J_0
J:89 [HIS] 0:2080 [G] F:111 [LYS] 1:2028 [U] ❌ 1YHQ_J_0
J:89 [HIS] 0:1104 [C] F:111 [LYS] 1:997 [C] ❌ 1YHQ_J_0
J:90 [LYS] 0:615 [G] F:112 [GLY] 1:549 [U] ❌ 1YHQ_J_0
J:91 [LYS] 0:535 [G] F:113 [PRO] 1:521 [A] ❌ 1YHQ_J_0
J:91 [LYS] 0:614 [U] F:113 [PRO] 1:548 [C] ❌ 1YHQ_J_0
J:91 [LYS] 0:534 [C] F:113 [PRO] 1:520 [A] ❌ 1YHQ_J_0
J:92 [GLN] 0:615 [G] F:114 [LEU] 1:549 [U] ❌ 1YHQ_J_0
J:95 [ARG] 0:535 [G] F:116 [TYR] 1:521 [A] ❌ 1YHQ_J_0
J:95 [ARG] 0:2083 [A] F:116 [TYR] 1:2031 [A] ❌ 1YHQ_J_0
J:21 [ARG] 0:1242 [A] F:27 [ARG] 1:1129 [G] ❌ 1YHQ_J_0
J:31 [LEU] 0:1105 [C] F:37 [ARG] 1:998 [A] ❌ 1YHQ_J_0
J:47 [THR] 0:1243 [C] F:65 [THR] 1:1130 [C] ❌ 1YHQ_J_0
J:48 [GLY] 0:1117 [A] F:66 [GLY] 1:1010 [A] ❌ 1YHQ_J_0
J:61 [VAL] 0:2676 [C] F:76 [ARG] 1:2629 [G] ❌ 1YHQ_J_0
J:63 [ILE] 0:2081 [A] F:77 [HIS] 1:2029 [G] ❌ 1YHQ_J_0
J:64 [GLY] 0:2677 [A] F:78 [THR] 1:2630 [A] ❌ 1YHQ_J_0
J:65 [ASN] 0:2082 [G] F:79 [GLU] 1:2030 [U] ❌ 1YHQ_J_0
J:65 [ASN] 0:2081 [A] F:79 [GLU] 1:2029 [G] ❌ 1YHQ_J_0
J:66 [ASP] 0:2677 [A] F:80 [PHE] 1:2630 [A] ❌ 1YHQ_J_0
J:66 [ASP] 0:1235 [G] F:80 [PHE] 1:1121 [G] ❌ 1YHQ_J_0
J:68 [GLY] 0:1235 [G] F:83 [GLY] 1:1121 [G] ❌ 1YHQ_J_0
J:70 [PHE] 0:2803 [C] F:85 [LYS] 1:2757 [C] ❌ 1YHQ_J_0
J:66 [ASP] 0:2654 [C] F:80 [PHE] 1:2608 [C] ❌ 6YSI_1:2608 no longer at interface
J:60 [ARG] 0:1237 [U] F:75 [TYR] 1:1124 [A] ❌ 6YSI_1:1124 no longer at interface
J:69 [TYR] 0:1237 [U] F:84 [LEU] 1:1124 [A] ❌ 6YSI_1:1124 no longer at interface
J:91 [LYS] 0:616 [U] F:113 [PRO] 1:550 [G] ❌ 6YSI_1:550 no longer at interface
J:73 [LYS] 0:2804 [C] F:92 [LEU] 1:2758 [U] ❌ 6YSI_F:92, 6YSI_1:2758 no longer at interface
J:56 [LYS] 0:1237 [U] F:73 [LYS] 1:1124 [A] ❌ 6YSI_F:73, 6YSI_1:1124 no longer at interface
J:99 [GLU] 0:2814 [A] F:120 [LYS] 1:2768 [U] ❌ 6YSI_1:2768 no longer at interface
J:65 [ASN] 0:2065 [C] F:79 [GLU] 1:2013 [G] ❌ 6YSI_1:2013 no longer at interface
J:65 [ASN] 0:2066 [C] F:79 [GLU] 1:2014 [C] ❌ 6YSI_1:2014 no longer at interface
J:49 [ARG] 0:1118 [A] F:67 [ASN] 1:1011 [A] ❌ 6YSI_1:1011 no longer at interface
J:95 [ARG] 0:533 [U] F:116 [TYR] 1:519 [C] ❌ 6YSI_1:519 no longer at interface
J:95 [ARG] 0:2814 [A] F:116 [TYR] 1:2768 [U] ❌ 6YSI_1:2768 no longer at interface
J:31 [LEU] 0:1106 [A] F:37 [ARG] 1:999 [A] ❌ 1YHQ_0:1106 no longer at interface
J:64 [GLY] 0:2678 [A] F:78 [THR] 1:2631 [G] ❌ 1YHQ_0:2678 no longer at interface
J:66 [ASP] 0:2678 [A] F:80 [PHE] 1:2631 [G] ❌ 1YHQ_0:2678 no longer at interface
J:68 [GLY] 0:2678 [A] F:83 [GLY] 1:2631 [G] ❌ 1YHQ_0:2678 no longer at interface
J:70 [PHE] 0:2678 [A] F:85 [LYS] 1:2631 [G] ❌ 1YHQ_0:2678 no longer at interface
J:76 [ASP] 0:2815 [G] F:98 [GLU] 1:2769 [A] ❌ 6YSI_F:98 no longer at interface
J:104 [TYR] 0:2815 [G] F:125 [TYR] 1:2769 [A] ❌ 6YSI_F:125 no longer at interface
J:101 [VAL] 0:2815 [G] F:122 [MET] 1:2769 [A] ❌ 6YSI_F:122 no longer at interface
J:73 [LYS] 0:2676 [C] F:92 [LEU] 1:2629 [G] ❌ 6YSI_F:92 no longer at interface
J:73 [LYS] 0:2677 [A] F:92 [LEU] 1:2630 [A] ❌ 6YSI_F:92 no longer at interface
J:56 [LYS] 0:1236 [A] F:73 [LYS] 1:1122 [U] ❌ 6YSI_F:73 no longer at interface
J:56 [LYS] 0:1241 [G] F:73 [LYS] 1:1128 [G] ❌ 6YSI_F:73 no longer at interface
J:56 [LYS] 0:1242 [A] F:73 [LYS] 1:1129 [G] ❌ 6YSI_F:73 no longer at interface
J:72 [PRO] 0:2676 [C] F:87 [THR] 1:2629 [G] ❌ 6YSI_F:87 no longer at interface
J:25 [GLN] 0:1109 [U] F:31 [GLU] 1:1002 [U] ❌ 6YSI_F:31 no longer at interface
J:103 [VAL] 0:2815 [G] F:124 [VAL] 1:2769 [A] ❌ 6YSI_F:124 no longer at interface
J:71 [TYR] 0:1242 [A] F:86 [GLU] 1:1129 [G] ❌ 6YSI_F:86 no longer at interface
J:71 [TYR] 0:2676 [C] F:86 [GLU] 1:2629 [G] ❌ 6YSI_F:86 no longer at interface
J:71 [TYR] 0:2677 [A] F:86 [GLU] 1:2630 [A] ❌ 6YSI_F:86 no longer at interface
J:94 [GLY] 0:615 [G] F:115 [GLY] 1:549 [U] ❌ 1YHQ_J:94 no longer at interface
J:53 [ILE] 0:1242 [A] F:72 [LYS] 1:1129 [G] ❌ 1YHQ_J:53 no longer at interface
J:53 [ILE] 0:1243 [C] F:72 [LYS] 1:1130 [C] ❌ 1YHQ_J:53 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A 0.91 3.15 0.20 0.61 0.92 0.65 0.71 0.50 0.46 0.22 0.40


Other pairs involving 1YHQ_J_0 or 6YSI_F_1

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 1YHQ_J_0 0.99 1.0 0.19 1.0 Ribosomal protein L13 and L16-A Archaeal large subunit ribosomal RNA compare
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6AZ3_H_1 0.54 0.75 1.56 0.29 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7RYG_I_A 0.48 0.91 3.68 0.19 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6S0Z_H_A 0.39 0.92 3.38 0.22 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7K00_i_a 0.39 0.9 3.39 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7O7Y_BO_B5 0.54 0.94 1.64 0.31 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 6YSI_F_1 0.89 0.98 1.14 0.59 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7O7Y_BO_B5 0.44 0.89 4.0 0.16 Ribosomal protein L13 and L16-A compare
6YSI_F_1 7K00_i_a 0.93 1.0 0.65 0.78 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7RYG_I_A 0.96 0.98 1.54 0.96 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare