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All interfaces > All interologs > Interface groups > group137 > 4Y4O_1N_1A vs 6YSI_F_1

Interface analysis


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Common contacts -

4Y4O_1N
4Y4O_1A
6YSI_F
6YSI_1
Conserved?
1N:114 [ARG] 1A:553 [A] F:116 [TYR] 1:520 [A] ✔
1N:114 [ARG] 1A:554 [A] F:116 [TYR] 1:521 [A] ✔
1N:114 [ARG] 1A:2064 [A] F:116 [TYR] 1:2031 [A] ✔
1N:3 [THR] 1A:1041 [C] F:3 [THR] 1:985 [C] ✔
1N:73 [THR] 1A:1178 [A] F:75 [TYR] 1:1122 [U] ✔
1N:78 [TYR] 1A:1177 [G] F:80 [PHE] 1:1121 [G] ✔
1N:78 [TYR] 1A:2632 [C] F:80 [PHE] 1:2609 [C] ✔
1N:78 [TYR] 1A:2653 [G] F:80 [PHE] 1:2630 [A] ✔
1N:78 [TYR] 1A:2654 [G] F:80 [PHE] 1:2631 [G] ✔
1N:51 [PHE] 1A:7 [G] F:53 [TYR] 1:7 [G] ✔
1N:51 [PHE] 1A:8 [A] F:53 [TYR] 1:8 [U] ✔
1N:75 [TYR] 1A:1177 [G] F:77 [HIS] 1:1121 [G] ✔
1N:75 [TYR] 1A:2062 [C] F:77 [HIS] 1:2029 [G] ✔
1N:24 [GLY] 1A:1058 [U] F:26 [GLY] 1:1002 [U] ✔
1N:24 [GLY] 1A:1184 [G] F:26 [GLY] 1:1129 [G] ✔
1N:24 [GLY] 1A:1185 [C] F:26 [GLY] 1:1130 [C] ✔
1N:24 [GLY] 1A:1189 [A] F:26 [GLY] 1:1134 [A] ✔
1N:79 [PRO] 1A:1177 [G] F:81 [PRO] 1:1121 [G] ✔
1N:79 [PRO] 1A:2526 [U] F:81 [PRO] 1:2503 [U] ✔
1N:79 [PRO] 1A:2527 [C] F:81 [PRO] 1:2504 [C] ✔
1N:107 [LEU] 1A:1052 [C] F:109 [LEU] 1:996 [C] ✔
1N:107 [LEU] 1A:1053 [C] F:109 [LEU] 1:997 [C] ✔
1N:108 [PRO] 1A:1053 [C] F:110 [PRO] 1:997 [C] ✔
1N:108 [PRO] 1A:1054 [C] F:110 [PRO] 1:998 [A] ✔
1N:100 [GLU] 1A:2793 [G] F:102 [GLU] 1:2769 [A] ✔
1N:80 [GLY] 1A:1177 [G] F:82 [GLY] 1:1121 [G] ✔
1N:80 [GLY] 1A:2526 [U] F:82 [GLY] 1:2503 [U] ✔
1N:80 [GLY] 1A:2527 [C] F:82 [GLY] 1:2504 [C] ✔
1N:37 [LYS] 1A:1052 [C] F:39 [LYS] 1:996 [C] ✔
1N:37 [LYS] 1A:1053 [C] F:39 [LYS] 1:997 [C] ✔
1N:37 [LYS] 1A:1054 [C] F:39 [LYS] 1:998 [A] ✔
1N:37 [LYS] 1A:1055 [A] F:39 [LYS] 1:999 [A] ✔
1N:76 [SER] 1A:2653 [G] F:78 [THR] 1:2630 [A] ✔
1N:76 [SER] 1A:2654 [G] F:78 [THR] 1:2631 [G] ✔
1N:132 [ALA] 1A:6 [A] F:134 [ALA] 1:6 [A] ✔
1N:110 [GLY] 1A:554 [A] F:112 [GLY] 1:521 [A] ✔
1N:110 [GLY] 1A:581 [G] F:112 [GLY] 1:549 [U] ✔
1N:65 [LYS] 1A:1186 [U] F:67 [ASN] 1:1131 [U] ✔
1N:102 [ALA] 1A:1183 [G] F:104 [ALA] 1:1128 [G] ✔
1N:102 [ALA] 1A:1184 [G] F:104 [ALA] 1:1129 [G] ✔
1N:130 [HIS] 1A:6 [A] F:132 [HIS] 1:6 [A] ✔
1N:130 [HIS] 1A:7 [G] F:132 [HIS] 1:7 [G] ✔
1N:113 [GLY] 1A:581 [G] F:115 [GLY] 1:549 [U] ✔
1N:82 [LEU] 1A:1177 [G] F:84 [LEU] 1:1121 [G] ✔
1N:82 [LEU] 1A:1178 [A] F:84 [LEU] 1:1122 [U] ✔
1N:2 [LYS] 1A:562 [C] F:2 [LYS] 1:529 [G] ✔
1N:2 [LYS] 1A:1041 [C] F:2 [LYS] 1:985 [C] ✔
1N:121 [LYS] 1A:7 [G] F:123 [LYS] 1:7 [G] ✔
1N:121 [LYS] 1A:8 [A] F:123 [LYS] 1:8 [U] ✔
1N:32 [THR] 1A:1052 [C] F:34 [ARG] 1:996 [C] ✔
1N:112 [LEU] 1A:580 [U] F:114 [LEU] 1:548 [C] ✔
1N:112 [LEU] 1A:581 [G] F:114 [LEU] 1:549 [U] ✔
1N:22 [THR] 1A:1185 [C] F:24 [THR] 1:1130 [C] ✔
1N:22 [THR] 1A:1186 [U] F:24 [THR] 1:1131 [U] ✔
1N:35 [ARG] 1A:1052 [C] F:37 [ARG] 1:996 [C] ✔
1N:35 [ARG] 1A:1053 [C] F:37 [ARG] 1:997 [C] ✔
1N:35 [ARG] 1A:1054 [C] F:37 [ARG] 1:998 [A] ✔
1N:35 [ARG] 1A:1055 [A] F:37 [ARG] 1:999 [A] ✔
1N:28 [THR] 1A:1051 [C] F:30 [THR] 1:995 [C] ✔
1N:28 [THR] 1A:1052 [C] F:30 [THR] 1:996 [C] ✔
1N:28 [THR] 1A:1058 [U] F:30 [THR] 1:1002 [U] ✔
1N:28 [THR] 1A:1183 [G] F:30 [THR] 1:1128 [G] ✔
1N:28 [THR] 1A:1189 [A] F:30 [THR] 1:1134 [A] ✔
1N:106 [MET] 1A:1052 [C] F:108 [MET] 1:996 [C] ✔
1N:106 [MET] 1A:1053 [C] F:108 [MET] 1:997 [C] ✔
1N:106 [MET] 1A:1182 [G] F:108 [MET] 1:1127 [G] ✔
1N:106 [MET] 1A:1183 [G] F:108 [MET] 1:1128 [G] ✔
1N:106 [MET] 1A:1184 [G] F:108 [MET] 1:1129 [G] ✔
1N:66 [LYS] 1A:1068 [G] F:68 [LYS] 1:1012 [G] ✔
1N:66 [LYS] 1A:1185 [C] F:68 [LYS] 1:1130 [C] ✔
1N:66 [LYS] 1A:1186 [U] F:68 [LYS] 1:1131 [U] ✔
1N:23 [LEU] 1A:1184 [G] F:25 [LEU] 1:1129 [G] ✔
1N:23 [LEU] 1A:1185 [C] F:25 [LEU] 1:1130 [C] ✔
1N:118 [LYS] 1A:8 [A] F:120 [LYS] 1:8 [U] ✔
1N:118 [LYS] 1A:2793 [G] F:120 [LYS] 1:2769 [A] ✔
1N:109 [LYS] 1A:1053 [C] F:111 [LYS] 1:997 [C] ✔
1N:109 [LYS] 1A:2061 [C] F:111 [LYS] 1:2028 [U] ✔
1N:64 [GLY] 1A:1186 [U] F:66 [GLY] 1:1131 [U] ✔
1N:31 [ALA] 1A:1052 [C] F:33 [ALA] 1:996 [C] ✔
1N:111 [PRO] 1A:553 [A] F:113 [PRO] 1:520 [A] ✔
1N:111 [PRO] 1A:554 [A] F:113 [PRO] 1:521 [A] ✔
1N:111 [PRO] 1A:580 [U] F:113 [PRO] 1:548 [C] ✔
1N:111 [PRO] 1A:581 [G] F:113 [PRO] 1:549 [U] ✔
1N:72 [TYR] 1A:1184 [G] F:74 [TYR] 1:1129 [G] ✔
1N:13 [TRP] 1A:7 [G] F:15 [TRP] 1:7 [G] ✔
1N:1 [MET] 1A:1041 [C] F:1 [MET] 1:985 [C] ✔
1N:25 [ARG] 1A:1058 [U] F:27 [ARG] 1:1002 [U] ✔
1N:25 [ARG] 1A:1185 [C] F:27 [ARG] 1:1130 [C] ✔
1N:25 [ARG] 1A:1186 [U] F:27 [ARG] 1:1131 [U] ✔
1N:25 [ARG] 1A:1188 [A] F:27 [ARG] 1:1133 [A] ✔
1N:25 [ARG] 1A:1189 [A] F:27 [ARG] 1:1134 [A] ✔
1N:74 [ARG] 1A:2652 [G] F:76 [ARG] 1:2629 [G] ✔
1N:74 [ARG] 1A:2653 [G] F:76 [ARG] 1:2630 [A] ✔
1N:105 [GLY] 1A:1052 [C] F:107 [GLY] 1:996 [C] ✔
1N:105 [GLY] 1A:1053 [C] F:107 [GLY] 1:997 [C] ✔
1N:105 [GLY] 1A:1182 [G] F:107 [GLY] 1:1127 [G] ✔
1N:105 [GLY] 1A:1183 [G] F:107 [GLY] 1:1128 [G] ✔
1N:62 [VAL] 1A:1185 [C] F:64 [VAL] 1:1130 [C] ✔
1N:45 [ASN] 1A:561 [A] F:47 [HIS] 1:528 [G] ✔
1N:45 [ASN] 1A:562 [C] F:47 [HIS] 1:529 [G] ✔
1N:45 [ASN] 1A:579 [G] F:47 [HIS] 1:547 [A] ✔
1N:45 [ASN] 1A:580 [U] F:47 [HIS] 1:548 [C] ✔
1N:45 [ASN] 1A:581 [G] F:47 [HIS] 1:549 [U] ✔
1N:5 [VAL] 1A:562 [C] F:5 [SER] 1:529 [G] ✔
1N:5 [VAL] 1A:563 [G] F:5 [SER] 1:530 [A] ✔
1N:129 [PRO] 1A:6 [A] F:131 [PRO] 1:6 [A] ✔
1N:44 [PRO] 1A:581 [G] F:46 [PRO] 1:549 [U] ✔
1N:101 [HIS] 1A:1183 [G] F:103 [ARG] 1:1128 [G] ✔
1N:101 [HIS] 1A:1184 [G] F:103 [ARG] 1:1129 [G] ✔
1N:94 [HIS] 1A:2651 [A] F:96 [LYS] 1:2628 [A] ✔
1N:94 [HIS] 1A:2652 [G] F:96 [LYS] 1:2629 [G] ✔
1N:83 [LYS] 1A:2653 [G] F:85 [LYS] 1:2630 [A] ✔
1N:83 [LYS] 1A:2654 [G] F:85 [LYS] 1:2631 [G] ✔
1N:83 [LYS] 1A:2781 [C] F:85 [LYS] 1:2757 [C] ✔
1N:70 [LYS] 1A:1184 [G] F:72 [LYS] 1:1129 [G] ✔
1N:61 [ARG] 1A:1185 [C] F:63 [GLN] 1:1130 [C] ✔
1N:103 [VAL] 1A:1183 [G] F:105 [VAL] 1:1128 [G] ✔
1N:63 [THR] 1A:1068 [G] F:65 [THR] 1:1012 [G] ✔
1N:63 [THR] 1A:1185 [C] F:65 [THR] 1:1130 [C] ✔
1N:63 [THR] 1A:1186 [U] F:65 [THR] 1:1131 [U] ✔
1N:46 [VAL] 1A:580 [U] F:48 [VAL] 1:548 [C] ✔
1N:81 [GLY] 1A:1177 [G] F:83 [GLY] 1:1121 [G] ✔
1N:81 [GLY] 1A:2654 [G] F:83 [GLY] 1:2631 [G] ✔
1N:69 [GLN] 1A:1068 [G] F:71 [ASP] 1:1012 [G] ✔
1N:133 [GLN] 1A:6 [A] F:135 [GLN] 1:6 [A] ✔
1N:133 [GLN] 1A:7 [G] F:135 [GLN] 1:7 [G] ✔
1N:98 [VAL] 1A:1184 [G] F:100 [ILE] 1:1129 [G] ✔
1N:73 [THR] 1A:1177 [G] F:75 [TYR] 1:1121 [G] ❌ 6YSI_F_1
1N:104 [LYS] 1A:1183 [G] F:106 [LYS] 1:1128 [G] ❌ 6YSI_F_1
1N:65 [LYS] 1A:1066 [A] F:67 [ASN] 1:1010 [A] ❌ 6YSI_F_1
1N:65 [LYS] 1A:1068 [G] F:67 [ASN] 1:1012 [G] ❌ 6YSI_F_1
1N:109 [LYS] 1A:581 [G] F:111 [LYS] 1:549 [U] ❌ 6YSI_F_1
1N:109 [LYS] 1A:2062 [C] F:111 [LYS] 1:2029 [G] ❌ 6YSI_F_1
1N:74 [ARG] 1A:1177 [G] F:76 [ARG] 1:1121 [G] ❌ 6YSI_F_1
1N:89 [LYS] 1A:2781 [C] F:91 [LYS] 1:2757 [C] ❌ 6YSI_F_1
1N:70 [LYS] 1A:1183 [G] F:72 [LYS] 1:1128 [G] ❌ 6YSI_F_1
1N:104 [LYS] 1A:2062 [C] F:106 [LYS] 1:2029 [G] ❌ 4Y4O_1N_1A
1N:118 [LYS] 1A:9 [U] F:120 [LYS] 1:9 [A] ❌ 4Y4O_1N_1A
1N:25 [ARG] 1A:1184 [G] F:27 [ARG] 1:1129 [G] ❌ 4Y4O_1N_1A
1N:3 [THR] 1A:562 [C] F:3 [THR] 1:529 [G] ❌ 4Y4O_1N_1A
1N:64 [GLY] 1A:1066 [A] F:66 [GLY] 1:1010 [A] ❌ 4Y4O_1N_1A
1N:70 [LYS] 1A:1185 [C] F:72 [LYS] 1:1130 [C] ❌ 4Y4O_1N_1A
1N:114 [ARG] 1A:552 [C] F:116 [TYR] 1:519 [C] ❌ 6YSI_1:519 no longer at interface
1N:75 [TYR] 1A:2046 [G] F:77 [HIS] 1:2013 [G] ❌ 6YSI_1:2013 no longer at interface
1N:65 [LYS] 1A:1067 [A] F:67 [ASN] 1:1011 [A] ❌ 6YSI_1:1011 no longer at interface
1N:118 [LYS] 1A:552 [C] F:120 [LYS] 1:519 [C] ❌ 6YSI_1:519 no longer at interface
1N:118 [LYS] 1A:2792 [U] F:120 [LYS] 1:2768 [U] ❌ 6YSI_1:2768 no longer at interface
1N:109 [LYS] 1A:582 [G] F:111 [LYS] 1:550 [G] ❌ 6YSI_1:550 no longer at interface
1N:83 [LYS] 1A:2782 [C] F:85 [LYS] 1:2758 [U] ❌ 6YSI_1:2758 no longer at interface
1N:104 [LYS] 1A:2063 [U] F:106 [LYS] 1:2030 [U] ❌ 4Y4O_1A:2063 no longer at interface
1N:7 [LYS] 1A:564 [G] F:7 [LYS] 1:531 [G] ❌ 4Y4O_1N:7, 4Y4O_1A:564 no longer at interface
1N:73 [THR] 1A:1179 [U] F:75 [TYR] 1:1123 [A] ❌ 4Y4O_1A:1179 no longer at interface
1N:77 [GLY] 1A:2063 [U] F:79 [GLU] 1:2030 [U] ❌ 4Y4O_1N:77, 4Y4O_1A:2063 no longer at interface
1N:79 [PRO] 1A:1176 [U] F:81 [PRO] 1:1120 [U] ❌ 4Y4O_1A:1176 no longer at interface
1N:89 [LYS] 1A:2751 [A] F:91 [LYS] 1:2727 [A] ❌ 4Y4O_1A:2751 no longer at interface
1N:117 [PHE] 1A:2793 [G] F:119 [ILE] 1:2769 [A] ❌ 6YSI_F:119 no longer at interface
1N:115 [ARG] 1A:9 [U] F:117 [ALA] 1:9 [A] ❌ 6YSI_F:117 no longer at interface
1N:115 [ARG] 1A:580 [U] F:117 [ALA] 1:548 [C] ❌ 6YSI_F:117 no longer at interface
1N:97 [ARG] 1A:2651 [A] F:99 [GLU] 1:2628 [A] ❌ 6YSI_F:99 no longer at interface
1N:97 [ARG] 1A:2652 [G] F:99 [GLU] 1:2629 [G] ❌ 6YSI_F:99 no longer at interface
1N:8 [GLN] 1A:9 [U] F:10 [GLU] 1:9 [A] ❌ 6YSI_F:10 no longer at interface
1N:119 [ARG] 1A:9 [U] F:121 [LYS] 1:9 [A] ❌ 6YSI_F:121 no longer at interface
1N:29 [LYS] 1A:1058 [U] F:31 [GLU] 1:1002 [U] ❌ 6YSI_F:31 no longer at interface
1N:42 [TRP] 1A:1055 [A] F:44 [TYR] 1:999 [A] ❌ 4Y4O_1N:42 no longer at interface
1N:7 [LYS] 1A:563 [G] F:7 [LYS] 1:530 [A] ❌ 4Y4O_1N:7 no longer at interface
1N:77 [GLY] 1A:1177 [G] F:79 [GLU] 1:1121 [G] ❌ 4Y4O_1N:77 no longer at interface
1N:77 [GLY] 1A:2062 [C] F:79 [GLU] 1:2029 [G] ❌ 4Y4O_1N:77 no longer at interface
1N:93 [THR] 1A:2652 [G] F:95 [HIS] 1:2629 [G] ❌ 4Y4O_1N:93 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA 0.97 0.77 0.58 0.97 0.97 0.91 0.88 0.89 0.87 0.46 0.63


Other pairs involving 4Y4O_1N_1A or 6YSI_F_1

Total number of entries: 17

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6S0Z_H_A 0.72 0.97 1.13 0.53 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 6AZ3_H_1 0.56 0.68 2.95 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7O7Y_BO_B5 0.39 0.89 3.76 0.16 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7K00_i_a 0.74 0.97 0.8 0.6 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7RYG_I_A 0.88 0.96 1.67 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 6YSI_F_1 0.89 0.98 1.14 0.59 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7O7Y_BO_B5 0.44 0.89 4.0 0.16 Ribosomal protein L13 and L16-A compare
6YSI_F_1 7K00_i_a 0.93 1.0 0.65 0.78 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7RYG_I_A 0.96 0.98 1.54 0.96 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare