RNAprotDB

All interfaces > All interologs > Interface groups > group137 > 4Y4O_1N_1A vs 7OF0_K_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1N
4Y4O_1A
7OF0_K
7OF0_A
Conserved?
1N:114 [ARG] 1A:2064 [A] K:119 [ARG] A:2705 [U] ✔
1N:73 [THR] 1A:1178 [A] K:78 [SER] A:2235 [C] ✔
1N:78 [TYR] 1A:2632 [C] K:83 [TYR] A:3107 [U] ✔
1N:78 [TYR] 1A:2654 [G] K:83 [TYR] A:3109 [U] ✔
1N:75 [TYR] 1A:1177 [G] K:80 [HIS] A:2234 [C] ✔
1N:24 [GLY] 1A:1184 [G] K:29 [GLY] A:2239 [A] ✔
1N:24 [GLY] 1A:1185 [C] K:29 [GLY] A:2240 [C] ✔
1N:79 [PRO] 1A:2526 [U] K:84 [PRO] A:3001 [G] ✔
1N:79 [PRO] 1A:2527 [C] K:84 [PRO] A:3002 [G] ✔
1N:80 [GLY] 1A:1177 [G] K:85 [GLY] A:2234 [C] ✔
1N:80 [GLY] 1A:2526 [U] K:85 [GLY] A:3001 [G] ✔
1N:80 [GLY] 1A:2527 [C] K:85 [GLY] A:3002 [G] ✔
1N:110 [GLY] 1A:554 [A] K:115 [ASN] A:1825 [A] ✔
1N:110 [GLY] 1A:581 [G] K:115 [ASN] A:1839 [C] ✔
1N:102 [ALA] 1A:1183 [G] K:107 [ALA] A:2238 [A] ✔
1N:102 [ALA] 1A:1184 [G] K:107 [ALA] A:2239 [A] ✔
1N:82 [LEU] 1A:1177 [G] K:87 [PHE] A:2234 [C] ✔
1N:82 [LEU] 1A:1178 [A] K:87 [PHE] A:2235 [C] ✔
1N:112 [LEU] 1A:580 [U] K:117 [HIS] A:1838 [C] ✔
1N:112 [LEU] 1A:581 [G] K:117 [HIS] A:1839 [C] ✔
1N:22 [THR] 1A:1185 [C] K:27 [PRO] A:2240 [C] ✔
1N:22 [THR] 1A:1186 [U] K:27 [PRO] A:2241 [A] ✔
1N:106 [MET] 1A:1182 [G] K:111 [MET] A:2237 [A] ✔
1N:106 [MET] 1A:1183 [G] K:111 [MET] A:2238 [A] ✔
1N:106 [MET] 1A:1184 [G] K:111 [MET] A:2239 [A] ✔
1N:66 [LYS] 1A:1185 [C] K:71 [LYS] A:2240 [C] ✔
1N:66 [LYS] 1A:1186 [U] K:71 [LYS] A:2241 [A] ✔
1N:23 [LEU] 1A:1184 [G] K:28 [PRO] A:2239 [A] ✔
1N:23 [LEU] 1A:1185 [C] K:28 [PRO] A:2240 [C] ✔
1N:109 [LYS] 1A:582 [G] K:114 [LYS] A:1840 [C] ✔
1N:109 [LYS] 1A:2061 [C] K:114 [LYS] A:2702 [G] ✔
1N:109 [LYS] 1A:2062 [C] K:114 [LYS] A:2703 [C] ✔
1N:111 [PRO] 1A:553 [A] K:116 [LEU] A:1824 [U] ✔
1N:111 [PRO] 1A:554 [A] K:116 [LEU] A:1825 [A] ✔
1N:111 [PRO] 1A:580 [U] K:116 [LEU] A:1838 [C] ✔
1N:111 [PRO] 1A:581 [G] K:116 [LEU] A:1839 [C] ✔
1N:72 [TYR] 1A:1184 [G] K:77 [TYR] A:2239 [A] ✔
1N:25 [ARG] 1A:1185 [C] K:30 [LYS] A:2240 [C] ✔
1N:25 [ARG] 1A:1186 [U] K:30 [LYS] A:2241 [A] ✔
1N:105 [GLY] 1A:1182 [G] K:110 [GLY] A:2237 [A] ✔
1N:105 [GLY] 1A:1183 [G] K:110 [GLY] A:2238 [A] ✔
1N:62 [VAL] 1A:1185 [C] K:67 [PHE] A:2240 [C] ✔
1N:45 [ASN] 1A:561 [A] K:50 [LEU] A:1832 [A] ✔
1N:45 [ASN] 1A:580 [U] K:50 [LEU] A:1838 [C] ✔
1N:45 [ASN] 1A:581 [G] K:50 [LEU] A:1839 [C] ✔
1N:44 [PRO] 1A:581 [G] K:49 [ALA] A:1839 [C] ✔
1N:89 [LYS] 1A:2781 [C] K:94 [GLN] A:3199 [U] ✔
1N:101 [HIS] 1A:1183 [G] K:106 [LEU] A:2238 [A] ✔
1N:101 [HIS] 1A:1184 [G] K:106 [LEU] A:2239 [A] ✔
1N:70 [LYS] 1A:1184 [G] K:75 [LYS] A:2239 [A] ✔
1N:103 [VAL] 1A:1183 [G] K:108 [ILE] A:2238 [A] ✔
1N:63 [THR] 1A:1185 [C] K:68 [SER] A:2240 [C] ✔
1N:63 [THR] 1A:1186 [U] K:68 [SER] A:2241 [A] ✔
1N:98 [VAL] 1A:1184 [G] K:103 [ILE] A:2239 [A] ✔
1N:114 [ARG] 1A:553 [A] K:119 [ARG] A:1824 [U] ❌ 7OF0_K_A
1N:114 [ARG] 1A:554 [A] K:119 [ARG] A:1825 [A] ❌ 7OF0_K_A
1N:73 [THR] 1A:1177 [G] K:78 [SER] A:2234 [C] ❌ 7OF0_K_A
1N:78 [TYR] 1A:1177 [G] K:83 [TYR] A:2234 [C] ❌ 7OF0_K_A
1N:75 [TYR] 1A:2062 [C] K:80 [HIS] A:2703 [C] ❌ 7OF0_K_A
1N:79 [PRO] 1A:1177 [G] K:84 [PRO] A:2234 [C] ❌ 7OF0_K_A
1N:104 [LYS] 1A:1183 [G] K:109 [TYR] A:2238 [A] ❌ 7OF0_K_A
1N:115 [ARG] 1A:580 [U] K:120 [THR] A:1838 [C] ❌ 7OF0_K_A
1N:113 [GLY] 1A:581 [G] K:118 [ARG] A:1839 [C] ❌ 7OF0_K_A
1N:109 [LYS] 1A:581 [G] K:114 [LYS] A:1839 [C] ❌ 7OF0_K_A
1N:70 [LYS] 1A:1183 [G] K:75 [LYS] A:2238 [A] ❌ 7OF0_K_A
1N:46 [VAL] 1A:580 [U] K:51 [SER] A:1838 [C] ❌ 7OF0_K_A
1N:104 [LYS] 1A:2062 [C] K:109 [TYR] A:2703 [C] ❌ 4Y4O_1N_1A
1N:105 [GLY] 1A:2062 [C] K:110 [GLY] A:2703 [C] ❌ 4Y4O_1N_1A
1N:108 [PRO] 1A:582 [G] K:113 [PRO] A:1840 [C] ❌ 4Y4O_1N_1A
1N:109 [LYS] 1A:1182 [G] K:114 [LYS] A:2237 [A] ❌ 4Y4O_1N_1A
1N:109 [LYS] 1A:554 [A] K:114 [LYS] A:1825 [A] ❌ 4Y4O_1N_1A
1N:109 [LYS] 1A:1183 [G] K:114 [LYS] A:2238 [A] ❌ 4Y4O_1N_1A
1N:110 [GLY] 1A:582 [G] K:115 [ASN] A:1840 [C] ❌ 4Y4O_1N_1A
1N:110 [GLY] 1A:2064 [A] K:115 [ASN] A:2705 [U] ❌ 4Y4O_1N_1A
1N:111 [PRO] 1A:2064 [A] K:116 [LEU] A:2705 [U] ❌ 4Y4O_1N_1A
1N:113 [GLY] 1A:2061 [C] K:118 [ARG] A:2702 [G] ❌ 4Y4O_1N_1A
1N:113 [GLY] 1A:2062 [C] K:118 [ARG] A:2703 [C] ❌ 4Y4O_1N_1A
1N:114 [ARG] 1A:2062 [C] K:119 [ARG] A:2703 [C] ❌ 4Y4O_1N_1A
1N:115 [ARG] 1A:553 [A] K:120 [THR] A:1824 [U] ❌ 4Y4O_1N_1A
1N:25 [ARG] 1A:1184 [G] K:30 [LYS] A:2239 [A] ❌ 4Y4O_1N_1A
1N:45 [ASN] 1A:563 [G] K:50 [LEU] A:1834 [U] ❌ 4Y4O_1N_1A
1N:66 [LYS] 1A:1184 [G] K:71 [LYS] A:2239 [A] ❌ 4Y4O_1N_1A
1N:79 [PRO] 1A:2654 [G] K:84 [PRO] A:3109 [U] ❌ 4Y4O_1N_1A
1N:75 [TYR] 1A:2046 [G] K:80 [HIS] A:2687 [C] ❌ 7OF0_A:2687 no longer at interface
1N:65 [LYS] 1A:1066 [A] K:70 [ASN] A:2158 [U] ❌ 7OF0_K:70, 7OF0_A:2158 no longer at interface
1N:65 [LYS] 1A:1067 [A] K:70 [ASN] A:2159 [U] ❌ 7OF0_K:70, 7OF0_A:2159 no longer at interface
1N:25 [ARG] 1A:1188 [A] K:30 [LYS] A:2243 [A] ❌ 7OF0_A:2243 no longer at interface
1N:45 [ASN] 1A:562 [C] K:50 [LEU] A:1833 [C] ❌ 7OF0_A:1833 no longer at interface
1N:45 [ASN] 1A:579 [G] K:50 [LEU] A:1837 [C] ❌ 7OF0_A:1837 no longer at interface
1N:104 [LYS] 1A:2063 [U] K:109 [TYR] A:2704 [A] ❌ 4Y4O_1A:2063 no longer at interface
1N:113 [GLY] 1A:2063 [U] K:118 [ARG] A:2704 [A] ❌ 4Y4O_1A:2063 no longer at interface
1N:114 [ARG] 1A:2065 [C] K:119 [ARG] A:2706 [A] ❌ 4Y4O_1A:2065 no longer at interface
1N:114 [ARG] 1A:2063 [U] K:119 [ARG] A:2704 [A] ❌ 4Y4O_1A:2063 no longer at interface
1N:25 [ARG] 1A:1187 [U] K:30 [LYS] A:2242 [U] ❌ 4Y4O_1A:1187 no longer at interface
1N:45 [ASN] 1A:564 [G] K:50 [LEU] A:1835 [A] ❌ 4Y4O_1A:564 no longer at interface
1N:46 [VAL] 1A:564 [G] K:51 [SER] A:1835 [A] ❌ 4Y4O_1A:564 no longer at interface
1N:75 [TYR] 1A:1176 [U] K:80 [HIS] A:2233 [U] ❌ 4Y4O_1A:1176 no longer at interface
1N:89 [LYS] 1A:2780 [C] K:94 [GLN] A:3198 [A] ❌ 4Y4O_1A:2780 no longer at interface
1N:76 [SER] 1A:2654 [G] K:81 [THR] A:3109 [U] ❌ 7OF0_K:81 no longer at interface
1N:65 [LYS] 1A:1186 [U] K:70 [ASN] A:2241 [A] ❌ 7OF0_K:70 no longer at interface
1N:28 [THR] 1A:1183 [G] K:33 [ALA] A:2238 [A] ❌ 7OF0_K:33 no longer at interface
1N:64 [GLY] 1A:1186 [U] K:69 [GLY] A:2241 [A] ❌ 7OF0_K:69 no longer at interface
1N:74 [ARG] 1A:1177 [G] K:79 [SER] A:2234 [C] ❌ 7OF0_K:79 no longer at interface
1N:83 [LYS] 1A:2654 [G] K:88 [ARG] A:3109 [U] ❌ 7OF0_K:88 no longer at interface
1N:83 [LYS] 1A:2781 [C] K:88 [ARG] A:3199 [U] ❌ 7OF0_K:88 no longer at interface
1N:83 [LYS] 1A:2782 [C] K:88 [ARG] A:3200 [U] ❌ 7OF0_K:88 no longer at interface
1N:61 [ARG] 1A:1185 [C] K:66 [ALA] A:2240 [C] ❌ 7OF0_K:66 no longer at interface
1N:81 [GLY] 1A:1177 [G] K:86 [GLY] A:2234 [C] ❌ 7OF0_K:86 no longer at interface
1N:81 [GLY] 1A:2654 [G] K:86 [GLY] A:3109 [U] ❌ 7OF0_K:86 no longer at interface
1N:71 [ILE] 1A:1178 [A] K:76 [VAL] A:2235 [C] ❌ 4Y4O_1N:71 no longer at interface
1N:77 [GLY] 1A:1177 [G] K:82 [GLY] A:2234 [C] ❌ 4Y4O_1N:77 no longer at interface
1N:84 [LYS] 1A:1178 [A] K:89 [GLN] A:2235 [C] ❌ 4Y4O_1N:84 no longer at interface
1N:92 [ALA] 1A:2781 [C] K:97 [LEU] A:3199 [U] ❌ 4Y4O_1N:92 no longer at interface
1N:93 [THR] 1A:2782 [C] K:98 [ARG] A:3200 [U] ❌ 4Y4O_1N:93 no longer at interface
1N:93 [THR] 1A:2781 [C] K:98 [ARG] A:3199 [U] ❌ 4Y4O_1N:93 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA 0.95 1.53 0.13 0.89 0.97 0.77 0.74 0.67 0.66 0.17 0.52


Other pairs involving 4Y4O_1N_1A or 7OF0_K_A

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_J_0 4Y4O_1N_1A 0.51 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 4Y4O_1N_1A 0.52 0.92 3.01 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6AZ3_H_1 0.56 0.68 2.95 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6S0Z_H_A 0.72 0.97 1.13 0.53 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7K00_i_a 0.74 0.97 0.8 0.6 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7O7Y_BO_B5 0.39 0.89 3.76 0.16 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 7OF0_K_A 0.62 0.94 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
7K00_i_a 7OF0_K_A 0.64 0.92 1.53 0.19 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7RYG_I_A 0.88 0.96 1.67 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7OF0_K_A 7RYG_I_A 0.65 0.91 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare