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All interfaces > All interologs > Interface groups > group137 > 6AZ3_H_1

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_H
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:33 [VAL] 1:1376 [C] 3.59 1:1255 [G] 70.3
H:33 [VAL] 1:1377 [U] 3.58 1:1249 [A] 70.3
H:34 [LEU] 1:1375 [G] 3.81 1:1256 [A] 65.3
H:34 [LEU] 1:1376 [C] 3.58 1:1255 [G] 65.3
H:35 [GLY] 1:1239 [U] 4.07 1:1380 [A] 93.1
H:35 [GLY] 1:1375 [G] 3.24 1:1256 [A] 93.1
H:35 [GLY] 1:1376 [C] 2.97 1:1255 [G] 93.1
H:35 [GLY] 1:1380 [A] 2.81 1:1239 [U] base:BB 93.1
H:36 [ARG] 1:1239 [U] 2.95 1:1380 [A] base:SC, base:BB base/AA stacks 93.1
H:36 [ARG] 1:1375 [G] 4.98 1:1256 [A] 93.1
H:36 [ARG] 1:1376 [C] 3.18 1:1255 [G] 93.1
H:36 [ARG] 1:1377 [U] 2.87 1:1249 [A] 93.1
H:36 [ARG] 1:1379 [A] 3.77 1:1247 [U] 93.1
H:36 [ARG] 1:1380 [A] 3.7 1:1239 [U] 93.1
H:39 [ALA] 1:1231 [G] 3.61 1:1374 [C] 88.7
H:39 [ALA] 1:1232 [U] 3.71 1:1373 [A] 88.7
H:39 [ALA] 1:1239 [U] 3.48 1:1380 [A] 88.7
H:39 [ALA] 1:1380 [A] 4.34 1:1239 [U] 88.7
H:40 [VAL] 1:1239 [U] 4.04 1:1380 [A] 34.6
H:42 [ALA] 1:1232 [U] 3.44 1:1373 [A] 97.7
H:43 [LYS] 1:1232 [U] 3.96 1:1373 [A] 92.8
H:43 [LYS] 1:1233 [C] 2.83 1:1372 [G] 92.8
H:43 [LYS] 1:1235 [A] 3.71 1:1234 [A] 92.8
H:46 [LEU] 1:1232 [U] 4.93 1:1373 [A] 92.0
H:46 [LEU] 1:1233 [C] 3.87 1:1372 [G] 92.0
H:60 [ASN] 1:1376 [C] 4.62 1:1255 [G] 61.5
H:61 [ILE] 1:1376 [C] 3.8 1:1255 [G] 74.6
H:62 [ALA] 1:1377 [U] 4.1 1:1249 [A] 91.7
H:64 [THR] 1:1250 [U] 4.54 69.6
H:66 [ILE] 1:1250 [U] 3.36 0.5
H:67 [ARG] 1:1249 [A] 3.8 1:1377 [U] 85.0
H:67 [ARG] 1:1250 [U] 3.02 85.0
H:67 [ARG] 1:1253 [OMU] 4.23 85.0
H:67 [ARG] 1:1254 [C] 2.97 base:SC 85.0
H:67 [ARG] 1:1377 [U] 3.8 1:1249 [A] 85.0
H:70 [ILE] 1:1250 [U] 3.55 35.1
H:70 [ILE] 1:1251 [U] 3.41 35.1
H:70 [ILE] 1:1253 [OMU] 3.95 35.1
H:71 [LYS] 1:1253 [OMU] 3.27 73.1
H:73 [LEU] 1:1251 [U] 4.03 43.9
H:74 [GLN] 1:1251 [U] 2.88 base:SC 31.6
H:74 [GLN] 1:1252 [C] 3.77 31.6
H:74 [GLN] 1:1253 [OMU] 3.48 31.6
H:74 [GLN] 1:1369 [G] 4.13 31.6
H:77 [ARG] 1:1368 [G] 3.39 60.6
H:77 [ARG] 1:1369 [G] 3.22 60.6
H:78 [LYS] 1:1253 [OMU] 3.92 82.9
H:78 [LYS] 1:1368 [G] 3.79 82.9
H:78 [LYS] 1:1369 [G] 3.16 82.9
H:79 [ARG] 1:1368 [G] 2.95 sugar:BB 78.0
H:80 [LYS] 1:1368 [G] 3.36 65.4
H:81 [LEU] 1:1367 [U] 3.63 76.9
H:81 [LEU] 1:1368 [G] 3.76 76.9
H:88 [PRO] 1:1368 [G] 3.91 90.3
H:88 [PRO] 1:1369 [G] 4.22 90.3
H:100 [ARG] 1:1374 [C] 3.64 1:1231 [G] 86.8
H:100 [ARG] 1:1375 [G] 3.56 1:1256 [A] 86.8
H:101 [THR] 1:1374 [C] 3.24 1:1231 [G] sugar:BB 72.2
H:101 [THR] 1:1375 [G] 3.53 1:1256 [A] 72.2
H:104 [SER] 1:1232 [U] 4.4 1:1373 [A] 92.7
H:104 [SER] 1:1373 [A] 3.89 1:1232 [U] 92.7
H:104 [SER] 1:1374 [C] 3.33 1:1231 [G] 92.7
H:105 [MET] 1:1231 [G] 3.39 1:1374 [C] 99.0
H:105 [MET] 1:1232 [U] 2.47 1:1373 [A] sugar:BB 99.0
H:105 [MET] 1:1233 [C] 2.98 1:1372 [G] 99.0
H:105 [MET] 1:1374 [C] 3.33 1:1231 [G] 99.0
H:105 [MET] 1:1375 [G] 4.14 1:1256 [A] 99.0
H:106 [LEU] 1:1232 [U] 4.61 1:1373 [A] 71.7
H:106 [LEU] 1:1233 [C] 3.64 1:1372 [G] 71.7
H:107 [PRO] 1:1233 [C] 3.57 1:1372 [G] 91.6
H:107 [PRO] 1:1234 [A] 3.79 1:1235 [A] 91.6
H:110 [THR] 1:664 [C] 3.98 1:469 [A] 85.4
H:110 [THR] 1:665 [C] 3.73 1:468 [G] 85.4
H:111 [LYS] 1:460 [A] 4.99 0.1
H:111 [LYS] 1:461 [G] 2.62 0.1
H:111 [LYS] 1:662 [C] 3.9 1:471 [G] 0.1
H:111 [LYS] 1:663 [C] 2.91 1:470 [A] 0.1
H:111 [LYS] 1:664 [C] 3.14 1:469 [A] 0.1
H:112 [ARG] 1:663 [C] 4.99 1:470 [A] 89.3
H:112 [ARG] 1:664 [C] 3.05 1:469 [A] 89.3
H:112 [ARG] 1:665 [C] 4.42 1:468 [G] 89.3
H:112 [ARG] 1:1233 [C] 4.9 1:1372 [G] 89.3
H:112 [ARG] 1:1234 [A] 3.36 1:1235 [A] 89.3
H:112 [ARG] 1:1235 [A] 4.77 1:1234 [A] 89.3
H:141 [ARG] 1:1238 [C] 3.27 40.8
H:141 [ARG] 1:1239 [U] 2.35 1:1380 [A] 40.8
H:145 [HIS] 1:1378 [U] 3.46 50.1
H:146 [VAL] 1:1378 [U] 2.69 sugar:BB 49.8
H:147 [CYS] 1:1377 [U] 3.77 1:1249 [A] 61.6
H:147 [CYS] 1:1378 [U] 3.32 61.6
H:148 [TYR] 1:1376 [C] 4.23 1:1255 [G] 61.2
H:148 [TYR] 1:1377 [U] 3.16 1:1249 [A] 61.2
H:148 [TYR] 1:1378 [U] 3.27 61.2
H:149 [ARG] 1:1378 [U] 2.59 base/AA stacks 52.2
H:149 [ARG] 1:1379 [A] 4.87 1:1247 [U] 52.2
H:152 [ARG] 1:1247 [U] 4.77 1:1379 [A] 69.5
H:152 [ARG] 1:1248 [C] 3.35 sugar:SC base/AA stacks 69.5
H:152 [ARG] 1:1377 [U] 4.4 1:1249 [A] 69.5
H:152 [ARG] 1:1378 [U] 3.89 69.5

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 6AZ3_H_1 H: Ribosomal protein ul13, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1N_1A 6AZ3_H_1 0.56 0.68 2.95 0.2 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6AZ3_H_1 0.54 0.75 1.56 0.29 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6AZ3_H_1 0.54 0.75 1.55 0.25 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 6S0Z_H_A 0.61 0.68 2.98 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 7K00_i_a 0.59 0.67 2.72 0.17 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 7O7Y_BO_B5 0.85 0.91 1.03 0.56 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare
6AZ3_H_1 7RYG_I_A 0.58 0.66 3.27 0.2 Ribosomal protein L13 and L16-A compare