RNAprotDB

Contacts -

6AZ3_H	6AZ3_2	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
H:2 [ALA]	2:1436 [A]	3.6				69.55
H:11 [ARG]	2:1442 [C]	3.21				70.46
H:11 [ARG]	2:1443 [G]	4.08				70.46
H:19 [LYS]	2:1448 [A]	4.53				19.32
H:20 [HIS]	2:1444 [A]	3.12		sugar:SC	base/AA stacks	43.83
H:20 [HIS]	2:1445 [G]	4.77				43.83
H:21 [ARG]	2:1444 [A]	4.3				40.51
H:21 [ARG]	2:1445 [G]	4.33				40.51
H:21 [ARG]	2:1446 [A]	4.44				40.51
H:22 [PRO]	2:1444 [A]	3.41				0.92
H:22 [PRO]	2:1445 [G]	3.76				0.92
H:24 [ILE]	2:1445 [G]	3.37				4.42
H:50 [LYS]	2:1445 [G]	3.27				61.32
H:51 [ILE]	2:1445 [G]	3.02		base:BB		85.12
H:52 [THR]	2:1445 [G]	3.38		base:SC		77.65
H:77 [ARG]	2:1323 [C]	4.1	2:1377 [G]			60.65
H:77 [ARG]	2:1324 [C]	2.48	2:1376 [G]			60.65
H:80 [LYS]	2:611 [U]	3.75	2:628 [A2M]			65.48
H:80 [LYS]	2:612 [C]	3.65	2:627 [G]			65.48
H:81 [LEU]	2:1322 [U]	3.39	2:1378 [G]			76.97
H:81 [LEU]	2:1323 [C]	4.51	2:1377 [G]			76.97
H:82 [THR]	2:1426 [A]	4.14	2:638 [C]			74.56
H:82 [THR]	2:1427 [C]	4.2	2:637 [G]			74.56
H:83 [ASN]	2:1427 [C]	2.81	2:637 [G]			94.3
H:83 [ASN]	2:1428 [U]	4.26	2:636 [A]			94.3
H:85 [THR]	2:630 [G]	4.9				44.22
H:86 [LYS]	2:628 [A2M]	3.47	2:611 [U]			75.3
H:86 [LYS]	2:629 [A]	3.08		sugar:BB		75.3
H:86 [LYS]	2:1426 [A]	3.31	2:638 [C]			75.3
H:86 [LYS]	2:1427 [C]	3.28	2:637 [G]			75.3
H:87 [GLY]	2:628 [A2M]	3.71	2:611 [U]			96.61
H:87 [GLY]	2:629 [A]	3.37				96.61
H:88 [PRO]	2:628 [A2M]	3.42	2:611 [U]			90.36
H:88 [PRO]	2:629 [A]	3.87				90.36
H:89 [PHE]	2:628 [A2M]	4.6	2:611 [U]			61.95
H:89 [PHE]	2:629 [A]	3.37				61.95
H:89 [PHE]	2:630 [G]	4.02				61.95
H:95 [SER]	2:1447 [A]	3.63		base:SC		88.16
H:103 [ARG]	2:629 [A]	4.87				98.14
H:104 [SER]	2:628 [A2M]	4.33	2:611 [U]			92.72
H:108 [ARG]	2:628 [A2M]	3.63	2:611 [U]			73.18
H:108 [ARG]	2:629 [A]	3.38				73.18
H:109 [TYR]	2:627 [G]	4.84	2:612 [C]			85.98
H:109 [TYR]	2:628 [A2M]	2.38	2:611 [U]			85.98
H:109 [TYR]	2:629 [A]	4.36				85.98
H:109 [TYR]	2:630 [G]	3.76				85.98
H:111 [LYS]	2:1440 [U]	4.9				0.14
H:115 [LYS]	2:1437 [A]	4.74				53.13
H:115 [LYS]	2:1438 [A]	4.53	2:1435 [G]			53.13
H:118 [ASN]	2:1438 [A]	4.58	2:1435 [G]			45.69
H:118 [ASN]	2:1445 [G]	3.96				45.69
H:119 [SER]	2:1445 [G]	2.82		base:SC, base:BB, base:BB		81.16
H:120 [LEU]	2:1445 [G]	4.64				86.09
H:121 [VAL]	2:1445 [G]	3.38				67.21
H:122 [ALA]	2:1447 [A]	4.44				63.66
H:123 [TYR]	2:1446 [A]	4.17				69.26
H:123 [TYR]	2:1447 [A]	2.56				69.26
H:124 [GLU]	2:1447 [A]	3.13				70.99
H:127 [PRO]	2:1447 [A]	3.42				96.39
H:128 [PRO]	2:1447 [A]	4.13				45.51
H:128 [PRO]	2:1448 [A]	3.52				45.51
H:128 [PRO]	2:1449 [A]	3.37				45.51
H:128 [PRO]	2:1450 [A]	3.55		base:BB		45.51
H:129 [ASN]	2:1446 [A]	3.15				57.74
H:129 [ASN]	2:1447 [A]	3.43				57.74
H:129 [ASN]	2:1448 [A]	4.12				57.74
H:129 [ASN]	2:1450 [A]	4.98				57.74
H:132 [ARG]	2:1450 [A]	3.19		sugar:SC	base/AA stacks	53.39
H:132 [ARG]	2:1452 [A]	4.72				53.39
H:185 [ARG]	2:1464 [A]	4.53				37.32
H:189 [LYS]	2:1464 [A]	3.57				40.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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