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All interfaces > All interologs > Interface groups > group137 > 6AZ3_H_4

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_H
6AZ3_4
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:2 [ALA] 4:173 [C] 4.39 4:31 [G] 69.5
H:2 [ALA] 4:174 [A] 2.81 69.5
H:3 [PHE] 4:174 [A] 3.51 46.4
H:4 [PRO] 4:174 [A] 3.42 55.8
H:5 [SER] 4:25 [G] 3.58 4:180 [C] 57.9
H:6 [ARG] 4:24 [A] 2.96 sugar:SC 58.2
H:6 [ARG] 4:25 [G] 2.72 4:180 [C] base/AA stacks 58.2
H:6 [ARG] 4:181 [C] 2.83 base:SC, base:SC 58.2
H:6 [ARG] 4:182 [A] 3.08 base/AA stacks 58.2
H:7 [LYS] 4:23 [C] 4.27 4:1 [G] 70.4
H:7 [LYS] 4:24 [A] 3.78 70.4
H:7 [LYS] 4:25 [G] 3.76 4:180 [C] 70.4
H:10 [SER] 4:183 [C] 2.79 83.9
H:13 [GLN] 4:183 [C] 4.89 60.5
H:66 [ILE] 4:132 [U] 3.99 4:157 [A] 0.5
H:66 [ILE] 4:133 [C] 4.03 0.5
H:69 [LYS] 4:131 [U] 3.66 4:159 [G] 62.3
H:69 [LYS] 4:132 [U] 4.16 4:157 [A] 62.3
H:73 [LEU] 4:160 [C] 3.63 4:130 [G] 43.9
H:73 [LEU] 4:161 [C] 3.92 4:129 [G] 43.9
H:76 [LEU] 4:36 [G] 4.87 4:166 [C] 56.7
H:76 [LEU] 4:161 [C] 3.72 4:129 [G] 56.7
H:79 [ARG] 4:36 [G] 4.8 4:166 [C] 78.0
H:79 [ARG] 4:37 [G] 2.87 4:165 [C] 78.0
H:79 [ARG] 4:38 [A] 3.42 78.0
H:84 [PRO] 4:36 [G] 3.62 4:166 [C] 86.1
H:84 [PRO] 4:37 [G] 3.81 4:165 [C] 86.1
H:85 [THR] 4:36 [G] 3.28 4:166 [C] 44.2
H:88 [PRO] 4:36 [G] 3.89 4:166 [C] 90.3
H:89 [PHE] 4:35 [G] 3.1 4:167 [C] 61.9
H:89 [PHE] 4:36 [G] 3.78 4:166 [C] 61.9
H:90 [HIS] 4:35 [G] 3.39 4:167 [C] 93.6
H:90 [HIS] 4:36 [G] 2.86 4:166 [C] 93.6
H:91 [HIS] 4:34 [A] 3.95 4:168 [A] sugar:SC 52.9
H:91 [HIS] 4:35 [G] 3.31 4:167 [C] 52.9
H:92 [ARG] 4:34 [A] 4.91 4:168 [A] 89.3
H:92 [ARG] 4:35 [G] 2.78 4:167 [C] 89.3
H:92 [ARG] 4:36 [G] 2.86 4:166 [C] 89.3
H:92 [ARG] 4:161 [C] 3.57 4:129 [G] 89.3
H:92 [ARG] 4:162 [A] 2.75 4:128 [U] 89.3
H:93 [ALA] 4:35 [G] 4.55 4:167 [C] 77.5
H:96 [ASP] 4:34 [A] 4.66 4:168 [A] 61.5
H:163 [HIS] 4:130 [G] 4.59 4:160 [C] 52.9
H:163 [HIS] 4:131 [U] 3.75 4:159 [G] 52.9
H:163 [HIS] 4:161 [C] 3.91 4:129 [G] 52.9
H:164 [VAL] 4:161 [C] 3.27 4:129 [G] 68.5
H:164 [VAL] 4:162 [A] 4.47 4:128 [U] 68.5
H:165 [GLY] 4:161 [C] 3.27 4:129 [G] 94.8
H:165 [GLY] 4:162 [A] 4.11 4:128 [U] 94.8
H:167 [LYS] 4:34 [A] 3.34 4:168 [A] 71.7
H:167 [LYS] 4:162 [A] 3.99 4:128 [U] 71.7
H:167 [LYS] 4:163 [A] 2.46 71.7
H:168 [TYR] 4:33 [G] 3.3 4:171 [A] 60.9
H:168 [TYR] 4:34 [A] 2.81 4:168 [A] 60.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 6AZ3_H_4 H: Ribosomal protein ul13, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_H_4 7O7Y_BO_B5 0.91 0.87 0.64 0.32 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare