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All interfaces > All interologs > Interface groups > group137 > 6AZ3_H_6

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_H
6AZ3_6
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:11 [ARG] 6:4 [U] 3.56 base:SC 70.4
H:11 [ARG] 6:5 [C] 2.83 base:SC, base:SC 70.4
H:11 [ARG] 6:6 [G] 4.87 70.4
H:14 [ARG] 6:3 [A] 3.34 sugar:SC base/AA stacks 31.2
H:14 [ARG] 6:4 [U] 3.14 base:SC 31.2
H:15 [LYS] 6:5 [C] 3.34 sugar:SC 53.5
H:15 [LYS] 6:6 [G] 4.48 53.5
H:18 [LYS] 6:72 [C] 3.81 1.6
H:18 [LYS] 6:73 [A] 4.26 1.6
H:20 [HIS] 6:9 [U] 4.72 43.8
H:28 [ASP] 6:19 [C] 4.84 92.7
H:30 [LYS] 6:20 [A] 3.62 57.9
H:30 [LYS] 6:21 [A] 3.22 57.9
H:31 [ASP] 6:21 [A] 3.64 72.6
H:31 [ASP] 6:22 [G] 4.67 72.6
H:55 [ARG] 6:19 [C] 4.55 89.2
H:55 [ARG] 6:20 [A] 2.77 89.2
H:126 [ILE] 6:19 [C] 4.0 71.5
H:130 [VAL] 6:17 [U] 4.75 56.0
H:131 [VAL] 6:17 [U] 2.49 sugar:BB 57.4
H:131 [VAL] 6:18 [A] 3.25 57.4
H:132 [ARG] 6:17 [U] 3.51 53.3
H:132 [ARG] 6:18 [A] 4.63 53.3
H:133 [THR] 6:17 [U] 3.89 5.2
H:134 [GLY] 6:16 [C] 3.93 69.7
H:134 [GLY] 6:17 [U] 2.48 base:BB 69.7
H:135 [GLY] 6:16 [C] 3.06 base:BB 76.0
H:135 [GLY] 6:17 [U] 3.73 76.0
H:136 [ARG] 6:17 [U] 2.89 64.6
H:136 [ARG] 6:18 [A] 3.18 64.6
H:136 [ARG] 6:19 [C] 3.29 64.6
H:143 [GLN] 6:22 [G] 4.55 70.9
H:144 [ARG] 6:21 [A] 4.99 62.9
H:144 [ARG] 6:22 [G] 3.95 62.9
H:145 [HIS] 6:22 [G] 3.59 base/AA stacks 50.1
H:150 [SER] 6:23 [A] 4.31 59.7
H:151 [GLU] 6:23 [A] 3.96 25.7
H:179 [ARG] 6:18 [A] 3.65 93.0
H:179 [ARG] 6:19 [C] 2.91 93.0
H:180 [VAL] 6:18 [A] 4.37 64.6
H:180 [VAL] 6:19 [C] 3.77 64.6
H:183 [ALA] 6:18 [A] 3.31 53.0
H:184 [SER] 6:18 [A] 3.92 3.0
H:187 [HIS] 6:18 [A] 3.4 base/AA stacks 31.2
H:193 [LEU] 6:14 [A] 4.36 0.0
H:193 [LEU] 6:15 [C] 4.69 0.0
H:194 [ARG] 6:15 [C] 4.38 1.3
H:194 [ARG] 6:16 [C] 3.33 1.3
H:197 [TRP] 6:15 [C] 3.34 base/AA stacks 19.3
H:201 [ARG] 6:15 [C] 3.0 base:SC, base:SC 7.3
H:201 [ARG] 6:45 [G] 3.9 6:12 [C] 7.3
H:201 [ARG] 6:46 [C] 3.67 6:11 [G] 7.3
H:209 [PRO] 6:53 [U] 3.7 2.9
H:209 [PRO] 6:54 [A] 4.12 2.9
H:211 [HIS] 6:53 [U] 3.35 0.2
H:211 [HIS] 6:54 [A] 2.7 0.2
H:212 [ASN] 6:53 [U] 3.44 sugar:SC 5.1
H:219 [PHE] 6:43 [A] 3.15 base:BB 6.0
H:220 [GLY] 6:43 [A] 3.37 82.8
H:221 [TYR] 6:43 [A] 3.24 base/AA stacks 38.6

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 6AZ3_H_6 H: Ribosomal protein ul13, Leishmania donovani (natural) 6: rRNA zeta, Leishmania donovani (natural) Ribosomal protein L13 and L16-A ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_H_6 7O7Y_BO_B5 0.61 0.81 1.95 0.16 Ribosomal protein L13 and L16-A compare