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All interfaces > All interologs > Interface groups > group137 > 6YSI_F_1

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6YSI_F
6YSI_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
F:1 [MET] 1:985 [C] 4.69 29.61
F:2 [LYS] 1:529 [G] 4.04 1:547 [A] 39.7
F:2 [LYS] 1:985 [C] 3.49 39.7
F:3 [THR] 1:529 [G] 3.92 1:547 [A] 81.78
F:3 [THR] 1:985 [C] 2.66 base:SC, base:BB, base:BB 81.78
F:5 [SER] 1:529 [G] 3.09 1:547 [A] 9.8
F:5 [SER] 1:530 [A] 4.73 1:546 [G] 9.8
F:7 [LYS] 1:530 [A] 3.55 1:546 [G] 45.78
F:7 [LYS] 1:531 [G] 3.34 1:545 [U] 45.78
F:8 [PRO] 1:530 [A] 3.41 1:546 [G] 5.33
F:8 [PRO] 1:547 [A] 4.96 1:529 [G] 5.33
F:15 [TRP] 1:7 [G] 3.6 1:2885 [C] 42.45
F:24 [THR] 1:1130 [C] 3.39 1:1014 [G] 59.35
F:24 [THR] 1:1131 [U] 3.53 1:1011 [A] 59.35
F:25 [LEU] 1:1129 [G] 3.92 1:1015 [G] 71.29
F:25 [LEU] 1:1130 [C] 3.7 1:1014 [G] 71.29
F:26 [GLY] 1:1002 [U] 4.16 1:1134 [A] 98.7
F:26 [GLY] 1:1129 [G] 3.11 1:1015 [G] 98.7
F:26 [GLY] 1:1130 [C] 3.07 1:1014 [G] 98.7
F:26 [GLY] 1:1134 [A] 3.63 1:1002 [U] 98.7
F:27 [ARG] 1:1002 [U] 3.13 1:1134 [A] base/AA stacks 95.93
F:27 [ARG] 1:1129 [G] 4.9 1:1015 [G] 95.93
F:27 [ARG] 1:1130 [C] 3.36 1:1014 [G] sugar:SC 95.93
F:27 [ARG] 1:1131 [U] 3.36 1:1011 [A] 95.93
F:27 [ARG] 1:1133 [A] 3.32 1:1009 [U] 95.93
F:27 [ARG] 1:1134 [A] 3.3 1:1002 [U] base/AA stacks 95.93
F:30 [THR] 1:995 [C] 3.16 1:1128 [G] 77.05
F:30 [THR] 1:996 [C] 3.85 1:1127 [G] 77.05
F:30 [THR] 1:1002 [U] 2.34 1:1134 [A] base:SC 77.05
F:30 [THR] 1:1128 [G] 3.72 1:995 [C] 77.05
F:30 [THR] 1:1134 [A] 3.74 1:1002 [U] 77.05
F:33 [ALA] 1:996 [C] 3.96 1:1127 [G] 93.32
F:34 [ARG] 1:996 [C] 5.0 1:1127 [G] 3.28
F:37 [ARG] 1:996 [C] 4.93 1:1127 [G] 66.26
F:37 [ARG] 1:997 [C] 2.58 1:1126 [G] 66.26
F:37 [ARG] 1:998 [A] 3.13 1:999 [A] 66.26
F:37 [ARG] 1:999 [A] 4.1 1:998 [A] 66.26
F:39 [LYS] 1:996 [C] 4.56 1:1127 [G] 98.95
F:39 [LYS] 1:997 [C] 3.05 1:1126 [G] 98.95
F:39 [LYS] 1:998 [A] 4.69 1:999 [A] 98.95
F:39 [LYS] 1:999 [A] 3.26 1:998 [A] 98.95
F:44 [TYR] 1:999 [A] 4.54 1:998 [A] 66.58
F:46 [PRO] 1:549 [U] 3.94 1:527 [G] 71.33
F:47 [HIS] 1:528 [G] 3.35 1:548 [C] 64.13
F:47 [HIS] 1:529 [G] 3.25 1:547 [A] 64.13
F:47 [HIS] 1:547 [A] 4.16 1:529 [G] 64.13
F:47 [HIS] 1:548 [C] 2.67 1:528 [G] sugar:BB 64.13
F:47 [HIS] 1:549 [U] 3.23 1:527 [G] 64.13
F:48 [VAL] 1:548 [C] 4.76 1:528 [G] 17.42
F:53 [TYR] 1:7 [G] 4.2 1:2885 [C] 30.46
F:53 [TYR] 1:8 [U] 3.11 1:2884 [G] 30.46
F:63 [GLN] 1:1130 [C] 4.7 1:1014 [G] 36.83
F:64 [VAL] 1:1130 [C] 4.07 1:1014 [G] 57.5
F:65 [THR] 1:1012 [G] 4.22 1:1013 [U] 87.67
F:65 [THR] 1:1130 [C] 4.66 1:1014 [G] 87.67
F:65 [THR] 1:1131 [U] 2.43 1:1011 [A] 87.67
F:66 [GLY] 1:1010 [A] 4.85 88.5
F:66 [GLY] 1:1131 [U] 3.57 1:1011 [A] 88.5
F:67 [ASN] 1:1131 [U] 4.63 1:1011 [A] 68.14
F:68 [LYS] 1:1012 [G] 2.41 1:1013 [U] base:SC 92.62
F:68 [LYS] 1:1130 [C] 3.18 1:1014 [G] 92.62
F:68 [LYS] 1:1131 [U] 3.3 1:1011 [A] 92.62
F:71 [ASP] 1:1012 [G] 4.05 1:1013 [U] 46.57
F:72 [LYS] 1:1129 [G] 2.99 1:1015 [G] 90.23
F:72 [LYS] 1:1130 [C] 4.66 1:1014 [G] 90.23
F:74 [TYR] 1:1129 [G] 3.8 1:1015 [G] 74.84
F:75 [TYR] 1:1122 [U] 3.34 base/AA stacks 24.74
F:75 [TYR] 1:1123 [A] 4.78 24.74
F:76 [ARG] 1:2629 [G] 4.13 1:2763 [C] 54.74
F:76 [ARG] 1:2630 [A] 2.93 1:2762 [U] 54.74
F:77 [HIS] 1:1121 [G] 3.04 sugar:SC base/AA stacks 80.66
F:77 [HIS] 1:2029 [G] 4.83 1:2012 [C] 80.66
F:78 [THR] 1:2630 [A] 3.3 1:2762 [U] 84.28
F:78 [THR] 1:2631 [G] 2.75 1:2761 [C] 84.28
F:79 [GLU] 1:1121 [G] 3.8 71.28
F:79 [GLU] 1:2029 [G] 3.85 1:2012 [C] sugar:SC 71.28
F:79 [GLU] 1:2030 [U] 3.54 1:521 [A] 71.28
F:80 [PHE] 1:1121 [G] 4.3 62.84
F:80 [PHE] 1:2609 [C] 4.89 1:2037 [G] 62.84
F:80 [PHE] 1:2630 [A] 3.7 1:2762 [U] 62.84
F:80 [PHE] 1:2631 [G] 3.56 1:2761 [C] 62.84
F:81 [PRO] 1:1120 [U] 3.72 61.04
F:81 [PRO] 1:1121 [G] 2.73 61.04
F:81 [PRO] 1:2503 [U] 3.62 1:2559 [G] 61.04
F:81 [PRO] 1:2504 [C] 3.76 1:2558 [G] 61.04
F:82 [GLY] 1:1121 [G] 3.92 86.51
F:82 [GLY] 1:2503 [U] 4.73 1:2559 [G] 86.51
F:82 [GLY] 1:2504 [C] 3.52 1:2558 [G] 86.51
F:83 [GLY] 1:1121 [G] 4.34 74.4
F:83 [GLY] 1:2631 [G] 4.39 1:2761 [C] 74.4
F:84 [LEU] 1:1121 [G] 3.93 56.61
F:84 [LEU] 1:1122 [U] 3.66 56.61
F:85 [LYS] 1:2630 [A] 3.39 1:2762 [U] 75.84
F:85 [LYS] 1:2631 [G] 3.08 1:2761 [C] 75.84
F:85 [LYS] 1:2757 [C] 4.72 1:2725 [G] 75.84
F:91 [LYS] 1:2727 [A] 3.92 1:2755 [G] 39.16
F:95 [HIS] 1:2629 [G] 3.96 1:2763 [C] 55.55
F:96 [LYS] 1:2628 [A] 3.75 1:2764 [A] 51.52
F:96 [LYS] 1:2629 [G] 4.13 1:2763 [C] 51.52
F:100 [ILE] 1:1129 [G] 4.76 1:1015 [G] 72.57
F:102 [GLU] 1:2769 [A] 4.06 39.73
F:103 [ARG] 1:1128 [G] 3.46 1:995 [C] 45.85
F:103 [ARG] 1:1129 [G] 3.77 1:1015 [G] 45.85
F:104 [ALA] 1:1128 [G] 2.59 1:995 [C] sugar:BB 87.32
F:104 [ALA] 1:1129 [G] 3.59 1:1015 [G] 87.32
F:105 [VAL] 1:1128 [G] 4.64 1:995 [C] 86.19
F:106 [LYS] 1:2029 [G] 3.37 1:2012 [C] 48.44
F:106 [LYS] 1:2030 [U] 3.65 1:521 [A] 48.44
F:107 [GLY] 1:996 [C] 4.46 1:1127 [G] 69.1
F:107 [GLY] 1:997 [C] 4.46 1:1126 [G] 69.1
F:107 [GLY] 1:1127 [G] 2.93 1:996 [C] base:BB 69.1
F:107 [GLY] 1:1128 [G] 3.35 1:995 [C] 69.1
F:108 [MET] 1:996 [C] 2.35 1:1127 [G] sugar:BB 98.87
F:108 [MET] 1:997 [C] 3.31 1:1126 [G] 98.87
F:108 [MET] 1:1127 [G] 4.19 1:996 [C] 98.87
F:108 [MET] 1:1128 [G] 3.41 1:995 [C] 98.87
F:108 [MET] 1:1129 [G] 4.14 1:1015 [G] 98.87
F:109 [LEU] 1:996 [C] 4.53 1:1127 [G] 88.13
F:109 [LEU] 1:997 [C] 3.31 1:1126 [G] 88.13
F:110 [PRO] 1:997 [C] 3.79 1:1126 [G] 92.24
F:110 [PRO] 1:998 [A] 4.04 1:999 [A] 92.24
F:111 [LYS] 1:997 [C] 3.47 1:1126 [G] sugar:SC 76.79
F:111 [LYS] 1:2028 [U] 3.43 1:2013 [G] 76.79
F:112 [GLY] 1:521 [A] 4.26 1:2030 [U] 85.08
F:112 [GLY] 1:549 [U] 3.63 1:527 [G] 85.08
F:113 [PRO] 1:520 [A] 3.54 43.87
F:113 [PRO] 1:521 [A] 3.54 1:2030 [U] 43.87
F:113 [PRO] 1:548 [C] 3.89 1:528 [G] 43.87
F:113 [PRO] 1:549 [U] 3.17 1:527 [G] 43.87
F:114 [LEU] 1:548 [C] 3.57 1:528 [G] 62.99
F:114 [LEU] 1:549 [U] 2.97 1:527 [G] 62.99
F:115 [GLY] 1:549 [U] 4.63 1:527 [G] 74.82
F:116 [TYR] 1:520 [A] 3.99 46.11
F:116 [TYR] 1:521 [A] 2.59 1:2030 [U] 46.11
F:116 [TYR] 1:2031 [A] 3.56 base:SC 46.11
F:120 [LYS] 1:8 [U] 4.83 1:2884 [G] 53.32
F:120 [LYS] 1:9 [A] 4.84 1:2618 [U] 53.32
F:120 [LYS] 1:2769 [A] 3.37 53.32
F:123 [LYS] 1:7 [G] 3.81 1:2885 [C] 51.76
F:123 [LYS] 1:8 [U] 3.46 1:2884 [G] 51.76
F:131 [PRO] 1:5 [A] 4.73 1:2887 [U] 51.17
F:131 [PRO] 1:6 [A] 3.69 1:2886 [U] 51.17
F:132 [HIS] 1:6 [A] 3.16 1:2886 [U] sugar:SC 66.46
F:132 [HIS] 1:7 [G] 3.75 1:2885 [C] 66.46
F:133 [ALA] 1:2888 [G] 4.53 1:4 [C] 0.75
F:134 [ALA] 1:5 [A] 4.03 1:2887 [U] 51.58
F:134 [ALA] 1:6 [A] 3.89 1:2886 [U] 51.58
F:134 [ALA] 1:2887 [U] 2.37 1:5 [A] sugar:BB 51.58
F:134 [ALA] 1:2888 [G] 3.7 1:4 [C] 51.58
F:135 [GLN] 1:6 [A] 2.26 1:2886 [U] base:SC, sugar:SC 71.43
F:135 [GLN] 1:7 [G] 3.28 1:2885 [C] 71.43
F:135 [GLN] 1:2887 [U] 4.61 1:5 [A] 71.43
F:136 [GLN] 1:2887 [U] 3.21 1:5 [A] 40.98
F:136 [GLN] 1:2888 [G] 3.66 1:4 [C] 40.98

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 6YSI_F_1 F: 50s ribosomal protein l13, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) 1: 23s ribosomal RNA, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) D0CG35 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7O7Y_BO_B5 0.44 0.89 4.0 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 6YSI_F_1 0.89 0.98 1.14 0.59 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7K00_i_a 0.93 1.0 0.65 0.78 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7RYG_I_A 0.96 0.98 1.54 0.96 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare