RNAprotDB

All interfaces > All interologs > Interface groups > group137 > 6YSI_F_1 vs 7OF0_K_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6YSI_F
6YSI_1
7OF0_K
7OF0_A
Conserved?
F:82 [GLY] 1:1121 [G] K:85 [GLY] A:2234 [C] ✔
F:82 [GLY] 1:2503 [U] K:85 [GLY] A:3001 [G] ✔
F:82 [GLY] 1:2504 [C] K:85 [GLY] A:3002 [G] ✔
F:47 [HIS] 1:528 [G] K:50 [LEU] A:1832 [A] ✔
F:47 [HIS] 1:548 [C] K:50 [LEU] A:1838 [C] ✔
F:47 [HIS] 1:549 [U] K:50 [LEU] A:1839 [C] ✔
F:104 [ALA] 1:1128 [G] K:107 [ALA] A:2238 [A] ✔
F:104 [ALA] 1:1129 [G] K:107 [ALA] A:2239 [A] ✔
F:24 [THR] 1:1130 [C] K:27 [PRO] A:2240 [C] ✔
F:24 [THR] 1:1131 [U] K:27 [PRO] A:2241 [A] ✔
F:75 [TYR] 1:1122 [U] K:78 [SER] A:2235 [C] ✔
F:27 [ARG] 1:1129 [G] K:30 [LYS] A:2239 [A] ✔
F:27 [ARG] 1:1130 [C] K:30 [LYS] A:2240 [C] ✔
F:27 [ARG] 1:1131 [U] K:30 [LYS] A:2241 [A] ✔
F:107 [GLY] 1:1127 [G] K:110 [GLY] A:2237 [A] ✔
F:107 [GLY] 1:1128 [G] K:110 [GLY] A:2238 [A] ✔
F:106 [LYS] 1:2029 [G] K:109 [TYR] A:2703 [C] ✔
F:106 [LYS] 1:2030 [U] K:109 [TYR] A:2704 [A] ✔
F:80 [PHE] 1:2609 [C] K:83 [TYR] A:3107 [U] ✔
F:80 [PHE] 1:2631 [G] K:83 [TYR] A:3109 [U] ✔
F:100 [ILE] 1:1129 [G] K:103 [ILE] A:2239 [A] ✔
F:68 [LYS] 1:1130 [C] K:71 [LYS] A:2240 [C] ✔
F:68 [LYS] 1:1131 [U] K:71 [LYS] A:2241 [A] ✔
F:84 [LEU] 1:1121 [G] K:87 [PHE] A:2234 [C] ✔
F:84 [LEU] 1:1122 [U] K:87 [PHE] A:2235 [C] ✔
F:81 [PRO] 1:2503 [U] K:84 [PRO] A:3001 [G] ✔
F:81 [PRO] 1:2504 [C] K:84 [PRO] A:3002 [G] ✔
F:72 [LYS] 1:1129 [G] K:75 [LYS] A:2239 [A] ✔
F:108 [MET] 1:1127 [G] K:111 [MET] A:2237 [A] ✔
F:108 [MET] 1:1128 [G] K:111 [MET] A:2238 [A] ✔
F:108 [MET] 1:1129 [G] K:111 [MET] A:2239 [A] ✔
F:77 [HIS] 1:1121 [G] K:80 [HIS] A:2234 [C] ✔
F:79 [GLU] 1:1121 [G] K:82 [GLY] A:2234 [C] ✔
F:74 [TYR] 1:1129 [G] K:77 [TYR] A:2239 [A] ✔
F:64 [VAL] 1:1130 [C] K:67 [PHE] A:2240 [C] ✔
F:116 [TYR] 1:2031 [A] K:119 [ARG] A:2705 [U] ✔
F:111 [LYS] 1:2028 [U] K:114 [LYS] A:2702 [G] ✔
F:26 [GLY] 1:1129 [G] K:29 [GLY] A:2239 [A] ✔
F:26 [GLY] 1:1130 [C] K:29 [GLY] A:2240 [C] ✔
F:103 [ARG] 1:1128 [G] K:106 [LEU] A:2238 [A] ✔
F:103 [ARG] 1:1129 [G] K:106 [LEU] A:2239 [A] ✔
F:105 [VAL] 1:1128 [G] K:108 [ILE] A:2238 [A] ✔
F:65 [THR] 1:1130 [C] K:68 [SER] A:2240 [C] ✔
F:65 [THR] 1:1131 [U] K:68 [SER] A:2241 [A] ✔
F:25 [LEU] 1:1129 [G] K:28 [PRO] A:2239 [A] ✔
F:25 [LEU] 1:1130 [C] K:28 [PRO] A:2240 [C] ✔
F:113 [PRO] 1:520 [A] K:116 [LEU] A:1824 [U] ✔
F:113 [PRO] 1:521 [A] K:116 [LEU] A:1825 [A] ✔
F:113 [PRO] 1:548 [C] K:116 [LEU] A:1838 [C] ✔
F:113 [PRO] 1:549 [U] K:116 [LEU] A:1839 [C] ✔
F:114 [LEU] 1:548 [C] K:117 [HIS] A:1838 [C] ✔
F:114 [LEU] 1:549 [U] K:117 [HIS] A:1839 [C] ✔
F:46 [PRO] 1:549 [U] K:49 [ALA] A:1839 [C] ✔
F:112 [GLY] 1:521 [A] K:115 [ASN] A:1825 [A] ✔
F:112 [GLY] 1:549 [U] K:115 [ASN] A:1839 [C] ✔
F:48 [VAL] 1:548 [C] K:51 [SER] A:1838 [C] ❌ 7OF0_K_A
F:80 [PHE] 1:1121 [G] K:83 [TYR] A:2234 [C] ❌ 7OF0_K_A
F:81 [PRO] 1:1120 [U] K:84 [PRO] A:2233 [U] ❌ 7OF0_K_A
F:81 [PRO] 1:1121 [G] K:84 [PRO] A:2234 [C] ❌ 7OF0_K_A
F:72 [LYS] 1:1130 [C] K:75 [LYS] A:2240 [C] ❌ 7OF0_K_A
F:77 [HIS] 1:2029 [G] K:80 [HIS] A:2703 [C] ❌ 7OF0_K_A
F:79 [GLU] 1:2029 [G] K:82 [GLY] A:2703 [C] ❌ 7OF0_K_A
F:79 [GLU] 1:2030 [U] K:82 [GLY] A:2704 [A] ❌ 7OF0_K_A
F:116 [TYR] 1:520 [A] K:119 [ARG] A:1824 [U] ❌ 7OF0_K_A
F:116 [TYR] 1:521 [A] K:119 [ARG] A:1825 [A] ❌ 7OF0_K_A
F:115 [GLY] 1:549 [U] K:118 [ARG] A:1839 [C] ❌ 7OF0_K_A
F:107 [GLY] 1:2029 [G] K:110 [GLY] A:2703 [C] ❌ 6YSI_F_1
F:111 [LYS] 1:1127 [G] K:114 [LYS] A:2237 [A] ❌ 6YSI_F_1
F:111 [LYS] 1:2029 [G] K:114 [LYS] A:2703 [C] ❌ 6YSI_F_1
F:111 [LYS] 1:521 [A] K:114 [LYS] A:1825 [A] ❌ 6YSI_F_1
F:111 [LYS] 1:1128 [G] K:114 [LYS] A:2238 [A] ❌ 6YSI_F_1
F:112 [GLY] 1:2031 [A] K:115 [ASN] A:2705 [U] ❌ 6YSI_F_1
F:113 [PRO] 1:2031 [A] K:116 [LEU] A:2705 [U] ❌ 6YSI_F_1
F:115 [GLY] 1:2030 [U] K:118 [ARG] A:2704 [A] ❌ 6YSI_F_1
F:115 [GLY] 1:2028 [U] K:118 [ARG] A:2702 [G] ❌ 6YSI_F_1
F:115 [GLY] 1:2029 [G] K:118 [ARG] A:2703 [C] ❌ 6YSI_F_1
F:116 [TYR] 1:2030 [U] K:119 [ARG] A:2704 [A] ❌ 6YSI_F_1
F:116 [TYR] 1:2029 [G] K:119 [ARG] A:2703 [C] ❌ 6YSI_F_1
F:47 [HIS] 1:530 [A] K:50 [LEU] A:1834 [U] ❌ 6YSI_F_1
F:68 [LYS] 1:1129 [G] K:71 [LYS] A:2239 [A] ❌ 6YSI_F_1
F:77 [HIS] 1:1120 [U] K:80 [HIS] A:2233 [U] ❌ 6YSI_F_1
F:81 [PRO] 1:2631 [G] K:84 [PRO] A:3109 [U] ❌ 6YSI_F_1
F:91 [LYS] 1:2757 [C] K:94 [GLN] A:3199 [U] ❌ 6YSI_F_1
F:95 [HIS] 1:2757 [C] K:98 [ARG] A:3199 [U] ❌ 6YSI_F_1
F:47 [HIS] 1:529 [G] K:50 [LEU] A:1833 [C] ❌ 7OF0_A:1833 no longer at interface
F:47 [HIS] 1:547 [A] K:50 [LEU] A:1837 [C] ❌ 7OF0_A:1837 no longer at interface
F:75 [TYR] 1:1123 [A] K:78 [SER] A:2236 [C] ❌ 7OF0_A:2236 no longer at interface
F:27 [ARG] 1:1133 [A] K:30 [LYS] A:2243 [A] ❌ 7OF0_A:2243 no longer at interface
F:66 [GLY] 1:1010 [A] K:69 [GLY] A:2158 [U] ❌ 7OF0_K:69, 7OF0_A:2158 no longer at interface
F:8 [PRO] 1:547 [A] K:10 [GLN] A:1837 [C] ❌ 7OF0_K:10, 7OF0_A:1837 no longer at interface
F:110 [PRO] 1:550 [G] K:113 [PRO] A:1840 [C] ❌ 6YSI_1:550 no longer at interface
F:111 [LYS] 1:550 [G] K:114 [LYS] A:1840 [C] ❌ 6YSI_1:550 no longer at interface
F:112 [GLY] 1:550 [G] K:115 [ASN] A:1840 [C] ❌ 6YSI_1:550 no longer at interface
F:116 [TYR] 1:2032 [C] K:119 [ARG] A:2706 [A] ❌ 6YSI_1:2032 no longer at interface
F:27 [ARG] 1:1132 [A] K:30 [LYS] A:2242 [U] ❌ 6YSI_1:1132 no longer at interface
F:47 [HIS] 1:545 [U] K:50 [LEU] A:1835 [A] ❌ 6YSI_1:545 no longer at interface
F:48 [VAL] 1:545 [U] K:51 [SER] A:1835 [A] ❌ 6YSI_1:545 no longer at interface
F:91 [LYS] 1:2756 [C] K:94 [GLN] A:3198 [A] ❌ 6YSI_1:2756 no longer at interface
F:95 [HIS] 1:2758 [U] K:98 [ARG] A:3200 [U] ❌ 6YSI_1:2758 no longer at interface
F:30 [THR] 1:1128 [G] K:33 [ALA] A:2238 [A] ❌ 7OF0_K:33 no longer at interface
F:67 [ASN] 1:1131 [U] K:70 [ASN] A:2241 [A] ❌ 7OF0_K:70 no longer at interface
F:85 [LYS] 1:2631 [G] K:88 [ARG] A:3109 [U] ❌ 7OF0_K:88 no longer at interface
F:85 [LYS] 1:2757 [C] K:88 [ARG] A:3199 [U] ❌ 7OF0_K:88 no longer at interface
F:78 [THR] 1:2631 [G] K:81 [THR] A:3109 [U] ❌ 7OF0_K:81 no longer at interface
F:66 [GLY] 1:1131 [U] K:69 [GLY] A:2241 [A] ❌ 7OF0_K:69 no longer at interface
F:83 [GLY] 1:1121 [G] K:86 [GLY] A:2234 [C] ❌ 7OF0_K:86 no longer at interface
F:83 [GLY] 1:2631 [G] K:86 [GLY] A:3109 [U] ❌ 7OF0_K:86 no longer at interface
F:8 [PRO] 1:530 [A] K:10 [GLN] A:1834 [U] ❌ 7OF0_K:10 no longer at interface
F:63 [GLN] 1:1130 [C] K:66 [ALA] A:2240 [C] ❌ 7OF0_K:66 no longer at interface
F:117 [ALA] 1:520 [A] K:120 [THR] A:1824 [U] ❌ 6YSI_F:117 no longer at interface
F:73 [LYS] 1:1122 [U] K:76 [VAL] A:2235 [C] ❌ 6YSI_F:73 no longer at interface
F:86 [GLU] 1:1122 [U] K:89 [GLN] A:2235 [C] ❌ 6YSI_F:86 no longer at interface
F:94 [ALA] 1:2757 [C] K:97 [LEU] A:3199 [U] ❌ 6YSI_F:94 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA 0.91 1.63 0.13 0.88 0.93 0.8 0.74 0.66 0.59 0.30 0.50


Other pairs involving 6YSI_F_1 or 7OF0_K_A

Total number of entries: 15

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1N_1A 6YSI_F_1 0.89 0.97 0.77 0.58 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 6YSI_F_1 0.50 0.91 3.15 0.2 Ribosomal protein L13 and L16-A compare
6S0Z_H_A 6YSI_F_1 0.89 0.98 1.14 0.59 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 7OF0_K_A 0.62 0.94 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7OF0_K_A 7RYG_I_A 0.65 0.91 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7O7Y_BO_B5 0.44 0.89 4.0 0.16 Ribosomal protein L13 and L16-A compare
6YSI_F_1 7K00_i_a 0.93 1.0 0.65 0.78 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7RYG_I_A 0.96 0.98 1.54 0.96 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 6YSI_F_1 0.50 0.91 3.14 0.2 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 6YSI_F_1 0.61 0.66 2.81 0.2 Ribosomal protein L13 and L16-A compare
7K00_i_a 7OF0_K_A 0.64 0.92 1.53 0.19 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare