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All interfaces > All interologs > Interface groups > group137 > 7O7Y_BO_B5

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7O7Y_BO
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BO:5 [GLN] B5:4502 [G] 4.09 B5:4617 [C] 35.37
BO:5 [GLN] B5:4503 [C] 4.93 B5:4616 [G] 35.37
BO:12 [ARG] B5:4508 [G] 3.47 51.44
BO:12 [ARG] B5:4509 [A] 2.87 51.44
BO:15 [LEU] B5:1992 [C] 4.52 B5:1872 [G] 74.83
BO:15 [LEU] B5:1993 [U] 3.17 B5:1868 [A] 74.83
BO:16 [LEU] B5:1991 [G] 4.2 B5:1873 [A] 67.72
BO:16 [LEU] B5:1992 [C] 3.7 B5:1872 [G] 67.72
BO:17 [GLY] B5:1991 [G] 3.09 B5:1873 [A] 97.81
BO:17 [GLY] B5:1992 [C] 2.9 B5:1872 [G] 97.81
BO:17 [GLY] B5:1996 [A] 3.33 97.81
BO:18 [ARG] B5:1991 [G] 4.98 B5:1873 [A] 97.56
BO:18 [ARG] B5:1992 [C] 3.21 B5:1872 [G] 97.56
BO:18 [ARG] B5:1993 [U] 2.94 B5:1868 [A] 97.56
BO:18 [ARG] B5:1995 [G] 3.63 B5:1866 [U] 97.56
BO:18 [ARG] B5:1996 [A] 3.22 97.56
BO:21 [ALA] B5:1851 [G] 3.59 B5:1990 [C] 88.41
BO:21 [ALA] B5:1852 [C] 3.6 B5:1989 [G] 88.41
BO:21 [ALA] B5:1996 [A] 4.0 88.41
BO:24 [ALA] B5:1852 [C] 3.71 B5:1989 [G] 98.22
BO:25 [LYS] B5:1852 [C] 3.6 B5:1989 [G] 88.89
BO:25 [LYS] B5:1853 [C] 2.72 B5:1988 [G] 88.89
BO:25 [LYS] B5:1854 [C] 4.77 B5:1856 [A] 88.89
BO:25 [LYS] B5:1855 [G] 3.05 88.89
BO:26 [GLN] B5:1858 [G] 4.91 40.13
BO:28 [LEU] B5:1852 [C] 4.48 B5:1989 [G] 85.66
BO:28 [LEU] B5:1853 [C] 3.46 B5:1988 [G] 85.66
BO:37 [ARG] B5:4507 [G] 4.69 89.89
BO:37 [ARG] B5:4508 [G] 2.66 89.89
BO:42 [ASN] B5:1992 [C] 4.98 B5:1872 [G] 63.42
BO:43 [ILE] B5:1992 [C] 3.88 B5:1872 [G] 79.52
BO:44 [SER] B5:1992 [C] 4.67 B5:1872 [G] 86.8
BO:44 [SER] B5:1993 [U] 2.46 B5:1868 [A] 86.8
BO:45 [GLY] B5:1993 [U] 3.87 B5:1868 [A] 91.94
BO:46 [ASN] B5:1869 [U] 3.47 64.09
BO:47 [PHE] B5:4427 [A] 3.8 B5:4455 [U] 52.48
BO:48 [TYR] B5:1869 [U] 3.28 base/AA stacks 4.47
BO:48 [TYR] B5:4428 [U] 3.19 B5:4453 [A] sugar:SC 4.47
BO:48 [TYR] B5:4429 [U] 3.35 4.47
BO:49 [ARG] B5:1868 [A] 3.6 B5:1993 [U] 67.49
BO:49 [ARG] B5:1869 [U] 2.34 67.49
BO:49 [ARG] B5:1871 [A] 3.1 67.49
BO:49 [ARG] B5:1993 [U] 3.44 B5:1868 [A] base:SC 67.49
BO:51 [LYS] B5:4426 [G] 4.79 B5:4456 [C] 49.11
BO:51 [LYS] B5:4427 [A] 3.27 B5:4455 [U] base:SC 49.11
BO:52 [LEU] B5:1869 [U] 3.29 34.77
BO:53 [LYS] B5:1992 [C] 3.63 B5:1872 [G] 60.13
BO:53 [LYS] B5:1993 [U] 4.95 B5:1868 [A] 60.13
BO:55 [LEU] B5:4456 [C] 3.56 B5:4426 [G] 32.17
BO:55 [LEU] B5:4457 [C] 4.22 B5:4425 [G] 32.17
BO:56 [ALA] B5:1985 [G] 4.49 8.36
BO:58 [LEU] B5:4457 [C] 3.59 B5:4425 [G] 47.66
BO:59 [ARG] B5:1984 [G] 3.49 54.63
BO:59 [ARG] B5:1985 [G] 4.59 54.63
BO:60 [LYS] B5:1984 [G] 3.76 77.3
BO:60 [LYS] B5:1985 [G] 2.78 77.3
BO:61 [ARG] B5:1984 [G] 3.06 sugar:BB, sugar:BB 66.62
BO:61 [ARG] B5:4332 [G] 4.7 B5:4462 [C] 66.62
BO:61 [ARG] B5:4333 [G] 2.45 B5:4461 [C] 66.62
BO:61 [ARG] B5:4334 [U] 2.92 B5:4460 [C] 66.62
BO:62 [MET] B5:1984 [G] 3.34 58.68
BO:62 [MET] B5:3601 [OMC] 4.23 B5:3618 [G] 58.68
BO:62 [MET] B5:3602 [C] 3.86 B5:3617 [G] 58.68
BO:62 [MET] B5:3618 [G] 3.94 B5:3601 [OMC] 58.68
BO:63 [ASN] B5:1983 [U] 3.22 64.11
BO:63 [ASN] B5:1984 [G] 2.91 base:BB 64.11
BO:63 [ASN] B5:4206 [U] 3.4 B5:4262 [G] sugar:SC 64.11
BO:63 [ASN] B5:4207 [C] 4.26 B5:4261 [G] 64.11
BO:64 [THR] B5:4311 [C] 4.37 B5:3627 [G] 71.1
BO:65 [ASN] B5:4311 [C] 2.7 B5:3627 [G] 89.91
BO:65 [ASN] B5:4312 [U] 4.39 B5:3626 [A] 89.91
BO:66 [PRO] B5:4332 [G] 3.52 B5:4462 [C] 92.66
BO:66 [PRO] B5:4333 [G] 3.4 B5:4461 [C] 92.66
BO:67 [SER] B5:4332 [G] 3.46 B5:4462 [C] 48.83
BO:68 [ARG] B5:3601 [OMC] 3.33 B5:3618 [G] 73.01
BO:68 [ARG] B5:3619 [OMC] 3.75 73.01
BO:68 [ARG] B5:3620 [G] 4.15 73.01
BO:68 [ARG] B5:4310 [A] 2.88 B5:3628 [C] 73.01
BO:68 [ARG] B5:4311 [C] 2.67 B5:3627 [G] 73.01
BO:69 [GLY] B5:3618 [G] 3.71 B5:3601 [OMC] 92.72
BO:69 [GLY] B5:3619 [OMC] 4.26 92.72
BO:70 [PRO] B5:1984 [G] 4.35 90.36
BO:70 [PRO] B5:1985 [G] 3.49 90.36
BO:70 [PRO] B5:3618 [G] 3.17 B5:3601 [OMC] 90.36
BO:70 [PRO] B5:3619 [OMC] 3.83 90.36
BO:70 [PRO] B5:4332 [G] 3.96 B5:4462 [C] 90.36
BO:71 [TYR] B5:3618 [G] 4.31 B5:3601 [OMC] 57.38
BO:71 [TYR] B5:3619 [OMC] 3.01 57.38
BO:71 [TYR] B5:3620 [G] 2.7 57.38
BO:71 [TYR] B5:4331 [U] 3.47 B5:4463 [A] 57.38
BO:71 [TYR] B5:4332 [G] 3.77 B5:4462 [C] 57.38
BO:72 [HIS] B5:4331 [U] 3.71 B5:4463 [A] 83.16
BO:72 [HIS] B5:4332 [G] 2.78 B5:4462 [C] 83.16
BO:73 [PHE] B5:4330 [A] 3.18 B5:4464 [G] 47.15
BO:73 [PHE] B5:4331 [U] 3.17 B5:4463 [A] 47.15
BO:74 [ARG] B5:4330 [A] 4.9 B5:4464 [G] 85.02
BO:74 [ARG] B5:4331 [U] 2.62 B5:4463 [A] 85.02
BO:74 [ARG] B5:4332 [G] 3.11 B5:4462 [C] 85.02
BO:74 [ARG] B5:4457 [C] 3.51 B5:4425 [G] 85.02
BO:74 [ARG] B5:4458 [C] 2.82 B5:4424 [G] 85.02
BO:75 [ALA] B5:4331 [U] 4.28 B5:4463 [A] 65.9
BO:82 [ARG] B5:1990 [C] 4.41 B5:1851 [G] 83.94
BO:82 [ARG] B5:3618 [G] 3.23 B5:3601 [OMC] 83.94
BO:82 [ARG] B5:3619 [OMC] 2.82 83.94
BO:83 [THR] B5:1990 [C] 2.63 B5:1851 [G] sugar:BB 70.74
BO:83 [THR] B5:1991 [G] 3.39 B5:1873 [A] 70.74
BO:84 [VAL] B5:1990 [C] 4.81 B5:1851 [G] 76.39
BO:85 [ARG] B5:3618 [G] 2.97 B5:3601 [OMC] 91.03
BO:85 [ARG] B5:3619 [OMC] 2.98 91.03
BO:86 [GLY] B5:1852 [C] 4.72 B5:1989 [G] 83.33
BO:86 [GLY] B5:1853 [C] 4.98 B5:1988 [G] 83.33
BO:86 [GLY] B5:1989 [G] 2.92 B5:1852 [C] base:BB 83.33
BO:86 [GLY] B5:1990 [C] 3.33 B5:1851 [G] 83.33
BO:87 [MET] B5:1851 [G] 3.31 B5:1990 [C] 99.0
BO:87 [MET] B5:1852 [C] 2.47 B5:1989 [G] sugar:BB 99.0
BO:87 [MET] B5:1853 [C] 2.98 B5:1988 [G] 99.0
BO:87 [MET] B5:1989 [G] 3.69 B5:1852 [C] 99.0
BO:87 [MET] B5:1990 [C] 3.25 B5:1851 [G] 99.0
BO:87 [MET] B5:1991 [G] 3.82 B5:1873 [A] 99.0
BO:87 [MET] B5:1996 [A] 4.76 99.0
BO:88 [LEU] B5:1852 [C] 4.65 B5:1989 [G] 69.58
BO:88 [LEU] B5:1853 [C] 3.79 B5:1988 [G] 69.58
BO:89 [PRO] B5:1853 [C] 3.5 B5:1988 [G] 93.17
BO:89 [PRO] B5:1854 [C] 3.67 B5:1856 [A] 93.17
BO:90 [HIS] B5:432 [U] 3.91 64.83
BO:90 [HIS] B5:3618 [G] 2.85 B5:3601 [OMC] 64.83
BO:90 [HIS] B5:3619 [OMC] 3.46 base:BB 64.83
BO:91 [LYS] B5:432 [U] 3.27 81.02
BO:91 [LYS] B5:3617 [G] 3.65 B5:3602 [C] 81.02
BO:91 [LYS] B5:3618 [G] 2.96 B5:3601 [OMC] base:SC 81.02
BO:91 [LYS] B5:3619 [OMC] 4.1 81.02
BO:92 [THR] B5:432 [U] 4.62 76.55
BO:92 [THR] B5:1253 [C] 3.83 B5:438 [G] 76.55
BO:92 [THR] B5:1254 [C] 4.44 B5:437 [G] 76.55
BO:93 [LYS] B5:431 [G] 4.93 0.0
BO:93 [LYS] B5:1252 [C] 2.83 B5:439 [G] 0.0
BO:93 [LYS] B5:1253 [C] 3.2 B5:438 [G] 0.0
BO:94 [ARG] B5:1252 [C] 4.45 B5:439 [G] 84.33
BO:94 [ARG] B5:1253 [C] 2.74 B5:438 [G] 84.33
BO:94 [ARG] B5:1853 [C] 4.69 B5:1988 [G] 84.33
BO:94 [ARG] B5:1854 [C] 3.17 B5:1856 [A] 84.33
BO:96 [GLN] B5:432 [U] 2.8 base:SC 45.22
BO:96 [GLN] B5:3619 [OMC] 3.84 45.22
BO:96 [GLN] B5:3620 [G] 3.18 45.22
BO:105 [PHE] B5:4650 [A] 3.28 50.48
BO:106 [ASP] B5:4649 [A] 3.44 65.27
BO:107 [GLY] B5:4649 [A] 3.7 89.22
BO:108 [ILE] B5:4649 [A] 3.13 67.1
BO:109 [PRO] B5:4649 [A] 3.63 92.36
BO:109 [PRO] B5:4650 [A] 3.57 92.36
BO:110 [PRO] B5:4649 [A] 3.53 15.92
BO:110 [PRO] B5:4650 [A] 3.86 15.92
BO:113 [ASP] B5:4505 [U] 3.57 47.33
BO:114 [LYS] B5:4504 [C] 3.2 52.75
BO:114 [LYS] B5:4505 [U] 3.19 52.75
BO:114 [LYS] B5:4652 [G] 4.0 52.75
BO:115 [LYS] B5:4504 [C] 3.36 1.58
BO:115 [LYS] B5:4505 [U] 3.32 1.58
BO:116 [LYS] B5:4504 [C] 2.87 63.58
BO:116 [LYS] B5:4505 [U] 3.72 63.58
BO:116 [LYS] B5:4506 [C] 3.03 63.58
BO:116 [LYS] B5:4614 [G] 3.92 63.58
BO:117 [ARG] B5:4505 [U] 3.52 59.67
BO:117 [ARG] B5:4506 [C] 4.36 59.67
BO:117 [ARG] B5:4507 [G] 2.83 59.67
BO:118 [MET] B5:4614 [G] 4.07 42.57
BO:126 [VAL] B5:1994 [G] 4.98 48.5
BO:126 [VAL] B5:4510 [U] 3.72 48.5
BO:127 [VAL] B5:1994 [G] 2.91 sugar:BB 21.51
BO:128 [ARG] B5:1993 [U] 4.27 B5:1868 [A] 53.35
BO:128 [ARG] B5:1994 [G] 3.24 53.35
BO:128 [ARG] B5:1995 [G] 3.25 B5:1866 [U] 53.35
BO:128 [ARG] B5:1996 [A] 2.87 53.35
BO:129 [LEU] B5:1993 [U] 3.66 B5:1868 [A] 59.56
BO:129 [LEU] B5:1994 [G] 3.44 59.56
BO:130 [LYS] B5:1866 [U] 4.48 B5:1995 [G] 28.81
BO:130 [LYS] B5:1994 [G] 3.07 sugar:SC 28.81
BO:130 [LYS] B5:1995 [G] 4.73 B5:1866 [U] 28.81
BO:131 [PRO] B5:1994 [G] 3.56 46.95
BO:133 [ARG] B5:1866 [U] 4.19 B5:1995 [G] 49.99
BO:133 [ARG] B5:1867 [C] 3.26 base/AA stacks 49.99
BO:133 [ARG] B5:1993 [U] 3.5 B5:1868 [A] 49.99
BO:133 [ARG] B5:1994 [G] 2.98 49.99
BO:133 [ARG] B5:1995 [G] 4.68 B5:1866 [U] 49.99
BO:134 [LYS] B5:4447 [A] 3.48 B5:4445 [U] 65.15
BO:134 [LYS] B5:4448 [G] 3.27 B5:4434 [C] 65.15
BO:140 [ARG] B5:4427 [A] 3.26 B5:4455 [U] 55.77
BO:140 [ARG] B5:4428 [U] 3.85 B5:4453 [A] 55.77
BO:143 [HIS] B5:4426 [G] 4.77 B5:4456 [C] 54.51
BO:144 [GLU] B5:4426 [G] 4.96 B5:4456 [C] 32.74
BO:144 [GLU] B5:4427 [A] 2.64 B5:4455 [U] sugar:SC 32.74
BO:144 [GLU] B5:4457 [C] 3.29 B5:4425 [G] 32.74
BO:145 [VAL] B5:4457 [C] 3.29 B5:4425 [G] 71.53
BO:145 [VAL] B5:4458 [C] 4.73 B5:4424 [G] 71.53
BO:146 [GLY] B5:4457 [C] 3.36 B5:4425 [G] 94.5
BO:146 [GLY] B5:4458 [C] 3.67 B5:4424 [G] 94.5
BO:148 [LYS] B5:4329 [C] 4.97 B5:4465 [G] 65.65
BO:148 [LYS] B5:4330 [A] 3.33 B5:4464 [G] 65.65
BO:148 [LYS] B5:4458 [C] 3.97 B5:4424 [G] 65.65
BO:148 [LYS] B5:4459 [G] 2.96 65.65
BO:149 [TYR] B5:4329 [C] 3.21 B5:4465 [G] 52.7
BO:149 [TYR] B5:4330 [A] 2.83 B5:4464 [G] 52.7
BO:156 [LEU] B5:4649 [A] 3.27 59.09
BO:157 [GLU] B5:4649 [A] 3.16 base:SC 85.61
BO:159 [LYS] B5:4648 [A] 4.62 49.57
BO:159 [LYS] B5:4649 [A] 3.63 49.57
BO:160 [ARG] B5:4506 [C] 4.87 85.36
BO:160 [ARG] B5:4507 [G] 3.22 85.36
BO:160 [ARG] B5:4508 [G] 4.55 85.36
BO:160 [ARG] B5:4649 [A] 3.79 85.36
BO:161 [LYS] B5:4506 [C] 4.59 50.01
BO:161 [LYS] B5:4507 [G] 3.88 50.01
BO:161 [LYS] B5:4508 [G] 3.13 50.01
BO:163 [LYS] B5:4505 [U] 4.85 34.58
BO:163 [LYS] B5:4647 [G] 3.67 34.58
BO:163 [LYS] B5:4648 [A] 2.44 34.58
BO:164 [ALA] B5:4505 [U] 4.42 37.57
BO:164 [ALA] B5:4506 [C] 3.43 37.57
BO:165 [LYS] B5:4506 [C] 3.52 2.75
BO:165 [LYS] B5:4507 [G] 4.26 2.75
BO:167 [HIS] B5:4504 [C] 4.59 1.11
BO:167 [HIS] B5:4505 [U] 3.36 base/AA stacks 1.11
BO:167 [HIS] B5:4506 [C] 3.72 1.11
BO:168 [TYR] B5:4506 [C] 3.27 base/AA stacks 3.2
BO:168 [TYR] B5:4514 [C] 3.9 B5:4606 [G] 3.2
BO:168 [TYR] B5:4515 [G] 2.3 B5:4605 [C] 3.2
BO:169 [ARG] B5:4599 [G] 3.28 B5:4522 [C] 6.39
BO:169 [ARG] B5:4600 [G] 4.0 B5:4521 [C] 6.39
BO:171 [LYS] B5:4505 [U] 2.88 59.36
BO:171 [LYS] B5:4506 [C] 2.57 59.36
BO:172 [LYS] B5:4515 [G] 3.78 B5:4605 [C] 37.84
BO:172 [LYS] B5:4516 [G] 3.4 B5:4604 [C] 37.84
BO:172 [LYS] B5:4612 [G] 3.77 base:BB 37.84
BO:175 [MET] B5:4612 [G] 3.29 0.5
BO:176 [ARG] B5:4516 [G] 2.71 B5:4604 [C] 41.17
BO:176 [ARG] B5:4517 [U] 4.04 B5:4603 [U] 41.17
BO:176 [ARG] B5:4612 [G] 4.03 41.17
BO:178 [ARG] B5:4618 [C] 4.31 B5:4501 [G] 13.81
BO:179 [LYS] B5:4612 [G] 3.9 6.03
BO:185 [VAL] B5:4632 [A] 4.77 51.55
BO:188 [LYS] B5:4631 [A] 3.92 10.28
BO:188 [LYS] B5:4632 [A] 2.45 10.28
BO:192 [PHE] B5:4668 [C] 3.99 B5:4629 [G] 4.53
BO:200 [GLY] B5:4611 [G] 3.13 base:BB 83.69
BO:201 [LEU] B5:4611 [G] 3.31 48.64
BO:201 [LEU] B5:4613 [A] 3.56 base:BB 48.64
BO:201 [LEU] B5:4617 [C] 4.17 B5:4502 [G] 48.64
BO:202 [LEU] B5:4611 [G] 3.72 17.95
BO:203 [VAL] B5:4611 [G] 3.36 sugar:BB 68.58

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 7O7Y_BO_B5 BO: Ribosomal protein ul13, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1N_1A 7O7Y_BO_B5 0.39 0.89 3.76 0.16 Ribosomal protein L13 and L16-A compare
1YHQ_J_0 7O7Y_BO_B5 0.54 0.94 1.64 0.31 Ribosomal protein L13 and L16-A compare
6AZ3_H_6 7O7Y_BO_B5 0.61 0.81 1.95 0.16 Ribosomal protein L13 and L16-A compare
6AZ3_H_2 7O7Y_BO_B5 0.47 0.9 1.1 0.23 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare
6S0Z_H_A 7O7Y_BO_B5 0.37 0.88 4.74 0.17 Ribosomal protein L13 and L16-A compare
6AZ3_H_4 7O7Y_BO_B5 0.91 0.87 0.64 0.32 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare
6YSI_F_1 7O7Y_BO_B5 0.44 0.89 4.0 0.16 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7O7Y_BO_B5 0.55 0.94 1.64 0.3 Ribosomal protein L13 and L16-A compare
6AZ3_H_1 7O7Y_BO_B5 0.85 0.91 1.03 0.56 Ribosomal protein L13 and L16-A Eukaryotic large subunit ribosomal RNA compare
7K00_i_a 7O7Y_BO_B5 0.36 0.89 4.02 0.14 Ribosomal protein L13 and L16-A compare