RNAprotDB

All interfaces > All interologs > Interface groups > group137 > 7OF0_K_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7OF0_K
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
K:27 [PRO] A:2240 [C] 3.94 58.85
K:27 [PRO] A:2241 [A] 3.76 58.85
K:28 [PRO] A:2239 [A] 4.52 74.77
K:28 [PRO] A:2240 [C] 3.61 74.77
K:29 [GLY] A:2239 [A] 2.96 94.19
K:29 [GLY] A:2240 [C] 3.34 94.19
K:30 [LYS] A:2239 [A] 4.28 89.72
K:30 [LYS] A:2240 [C] 2.7 89.72
K:30 [LYS] A:2241 [A] 3.22 89.72
K:30 [LYS] A:2242 [U] 3.15 89.72
K:49 [ALA] A:1839 [C] 3.09 A:1831 [G] 61.57
K:50 [LEU] A:1832 [A] 3.93 66.77
K:50 [LEU] A:1834 [U] 4.56 66.77
K:50 [LEU] A:1835 [A] 2.97 base:BB 66.77
K:50 [LEU] A:1838 [C] 3.4 66.77
K:50 [LEU] A:1839 [C] 3.47 A:1831 [G] 66.77
K:51 [SER] A:1835 [A] 4.8 33.5
K:67 [PHE] A:2240 [C] 3.88 48.41
K:68 [SER] A:2240 [C] 4.85 81.81
K:68 [SER] A:2241 [A] 2.56 81.81
K:71 [LYS] A:2239 [A] 4.93 93.44
K:71 [LYS] A:2240 [C] 2.7 93.44
K:71 [LYS] A:2241 [A] 3.26 93.44
K:75 [LYS] A:2239 [A] 2.93 91.56
K:76 [VAL] A:2235 [C] 4.99 16.78
K:77 [TYR] A:2239 [A] 3.76 88.61
K:78 [SER] A:2235 [C] 3.35 41.46
K:80 [HIS] A:2233 [U] 4.73 84.63
K:80 [HIS] A:2234 [C] 2.97 base/AA stacks 84.63
K:82 [GLY] A:2234 [C] 4.55 75.59
K:83 [TYR] A:3107 [U] 4.53 A:2711 [A] 71.11
K:83 [TYR] A:3109 [U] 3.51 base/AA stacks 71.11
K:84 [PRO] A:3001 [G] 3.52 A:3057 [C] 70.23
K:84 [PRO] A:3002 [G] 3.78 A:3056 [C] 70.23
K:84 [PRO] A:3109 [U] 4.2 70.23
K:85 [GLY] A:2234 [C] 4.44 83.85
K:85 [GLY] A:3001 [G] 4.47 A:3057 [C] 83.85
K:85 [GLY] A:3002 [G] 3.19 A:3056 [C] 83.85
K:87 [PHE] A:2234 [C] 3.18 61.52
K:87 [PHE] A:2235 [C] 3.62 61.52
K:89 [GLN] A:2235 [C] 3.05 sugar:SC 26.96
K:94 [GLN] A:3198 [A] 4.06 18.48
K:94 [GLN] A:3199 [U] 3.45 18.48
K:97 [LEU] A:3199 [U] 3.11 28.37
K:98 [ARG] A:3199 [U] 3.02 56.55
K:98 [ARG] A:3200 [U] 2.63 56.55
K:103 [ILE] A:2239 [A] 4.72 67.43
K:106 [LEU] A:2238 [A] 4.0 31.53
K:106 [LEU] A:2239 [A] 4.65 31.53
K:107 [ALA] A:2238 [A] 2.6 sugar:BB 90.57
K:107 [ALA] A:2239 [A] 3.88 90.57
K:108 [ILE] A:2238 [A] 4.71 86.57
K:109 [TYR] A:2703 [C] 3.6 A:2686 [G] 15.56
K:109 [TYR] A:2704 [A] 2.82 A:1826 [G] 15.56
K:110 [GLY] A:2237 [A] 3.62 66.91
K:110 [GLY] A:2238 [A] 3.38 66.91
K:110 [GLY] A:2703 [C] 4.64 A:2686 [G] 66.91
K:111 [MET] A:2237 [A] 4.73 93.42
K:111 [MET] A:2238 [A] 3.28 93.42
K:111 [MET] A:2239 [A] 3.11 93.42
K:113 [PRO] A:1840 [C] 4.91 A:1830 [G] 86.98
K:114 [LYS] A:1825 [A] 3.92 A:2705 [U] 67.29
K:114 [LYS] A:1840 [C] 4.75 A:1830 [G] 67.29
K:114 [LYS] A:2237 [A] 3.32 base:SC 67.29
K:114 [LYS] A:2238 [A] 4.88 67.29
K:114 [LYS] A:2702 [G] 3.47 A:2687 [C] 67.29
K:114 [LYS] A:2703 [C] 3.54 A:2686 [G] 67.29
K:115 [ASN] A:1825 [A] 3.48 A:2705 [U] 89.41
K:115 [ASN] A:1839 [C] 3.1 A:1831 [G] 89.41
K:115 [ASN] A:1840 [C] 3.31 A:1830 [G] 89.41
K:115 [ASN] A:2705 [U] 4.97 A:1825 [A] 89.41
K:116 [LEU] A:1824 [U] 3.55 64.47
K:116 [LEU] A:1825 [A] 3.5 A:2705 [U] 64.47
K:116 [LEU] A:1838 [C] 3.24 64.47
K:116 [LEU] A:1839 [C] 2.93 A:1831 [G] 64.47
K:116 [LEU] A:2705 [U] 3.93 A:1825 [A] 64.47
K:117 [HIS] A:1838 [C] 3.38 69.74
K:117 [HIS] A:1839 [C] 3.53 A:1831 [G] 69.74
K:118 [ARG] A:2702 [G] 4.82 A:2687 [C] 82.3
K:118 [ARG] A:2703 [C] 2.73 A:2686 [G] 82.3
K:118 [ARG] A:2704 [A] 4.59 A:1826 [G] 82.3
K:119 [ARG] A:2703 [C] 4.82 A:2686 [G] 35.47
K:119 [ARG] A:2704 [A] 2.84 A:1826 [G] 35.47
K:119 [ARG] A:2705 [U] 2.27 A:1825 [A] 35.47
K:119 [ARG] A:2706 [A] 4.72 35.47
K:120 [THR] A:1824 [U] 4.94 0.18
K:149 [ARG] A:2241 [A] 4.97 25.56
K:175 [ASP] A:3183 [U] 4.1 44.94
K:176 [TYR] A:3181 [U] 4.13 A:3185 [A] 37.55
K:176 [TYR] A:3183 [U] 3.11 base/AA stacks 37.55
K:177 [ARG] A:3183 [U] 3.35 base:BB 10.78
K:178 [LEU] A:3183 [U] 4.43 9.93

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group137 7OF0_K_A K: 39s ribosomal protein l13, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q9BYD1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_J_0 7OF0_K_A 0.41 0.91 3.37 0.16 Ribosomal protein L13 and L16-A compare
1VQ8_J_0 7OF0_K_A 0.41 0.91 3.33 0.1 Ribosomal protein L13 and L16-A compare
4Y4O_1N_1A 7OF0_K_A 0.67 0.95 1.53 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6S0Z_H_A 7OF0_K_A 0.62 0.94 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7OF0_K_A 7RYG_I_A 0.65 0.91 2.27 0.1 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
6YSI_F_1 7OF0_K_A 0.66 0.91 1.63 0.13 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare
7K00_i_a 7OF0_K_A 0.64 0.92 1.53 0.19 Ribosomal protein L13 and L16-A Bacterial large subunit ribosomal RNA compare