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All interfaces > All interologs > Interface groups > group138 > 1JJ2_H_0

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1JJ2_H
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:1 [LYS] 0:2494 [G] 3.13 0:2528 [U] 92.72
H:1 [LYS] 0:2495 [U] 3.12 0:2527 [U] 92.72
H:1 [LYS] 0:2520 [G] 4.42 0:2500 [C] 92.72
H:2 [PRO] 0:2494 [G] 4.16 0:2528 [U] 75.42
H:2 [PRO] 0:2495 [U] 4.04 0:2527 [U] 75.42
H:2 [PRO] 0:2521 [A] 4.82 0:2499 [U] 75.42
H:3 [GLY] 0:2520 [G] 4.53 0:2500 [C] 56.7
H:3 [GLY] 0:2521 [A] 3.6 0:2499 [U] 56.7
H:4 [ALA] 0:1056 [U] 4.36 54.47
H:4 [ALA] 0:2494 [G] 4.9 0:2528 [U] 54.47
H:4 [ALA] 0:2521 [A] 4.3 0:2499 [U] 54.47
H:5 [MET] 0:1056 [U] 3.28 65.28
H:5 [MET] 0:2494 [G] 3.57 0:2528 [U] 65.28
H:7 [ARG] 0:2521 [A] 2.88 0:2499 [U] 86.42
H:7 [ARG] 0:2522 [G] 2.92 0:2498 [C] 86.42
H:10 [SER] 0:1053 [G] 3.94 0:1061 [C] 1.56
H:11 [LYS] 0:1054 [G] 4.28 0:1060 [C] 50.26
H:11 [LYS] 0:1055 [G] 2.82 0:1058 [A] 50.26
H:11 [LYS] 0:1056 [U] 3.53 50.26
H:12 [PRO] 0:1006 [A] 4.27 67.16
H:12 [PRO] 0:1053 [G] 3.0 0:1061 [C] 67.16
H:12 [PRO] 0:1054 [G] 3.21 0:1060 [C] 67.16
H:13 [ALA] 0:1005 [A] 3.35 0:959 [C] 56.11
H:13 [ALA] 0:1006 [A] 3.23 56.11
H:14 [TYR] 0:1006 [A] 3.54 69.2
H:14 [TYR] 0:1007 [A] 3.48 69.2
H:14 [TYR] 0:2311 [A] 4.95 0:2297 [U] 69.2
H:15 [THR] 0:965 [A] 4.22 0:1003 [U] 87.68
H:15 [THR] 0:1004 [C] 4.19 0:964 [G] 87.68
H:15 [THR] 0:1005 [A] 2.84 0:959 [C] sugar:SC 87.68
H:16 [ARG] 0:1005 [A] 3.4 0:959 [C] base:SC 89.04
H:16 [ARG] 0:1007 [A] 2.91 89.04
H:16 [ARG] 0:1008 [C] 2.78 0:958 [G] 89.04
H:17 [ARG] 0:965 [A] 3.52 0:1003 [U] 49.57
H:17 [ARG] 0:966 [U] 4.1 0:1002 [G] 49.57
H:18 [GLU] 0:963 [C] 4.84 73.05
H:18 [GLU] 0:964 [G] 3.42 0:1004 [C] 73.05
H:19 [TYR] 0:1007 [A] 3.38 base/AA stacks 79.24
H:19 [TYR] 0:1008 [C] 3.08 0:958 [G] 79.24
H:19 [TYR] 0:2311 [A] 4.6 0:2297 [U] 79.24
H:19 [TYR] 0:2312 [G] 3.47 0:2296 [C] 79.24
H:19 [TYR] 0:2363 [G] 4.97 0:2423 [C] 79.24
H:20 [ILE] 0:1007 [A] 4.16 80.97
H:26 [LYS] 0:966 [U] 4.84 0:1002 [G] 35.23
H:26 [LYS] 0:967 [U] 3.98 0:1001 [U] 35.23
H:27 [LYS] 0:2519 [C] 4.38 0:2501 [G] 74.51
H:31 [PHE] 0:967 [U] 3.64 0:1001 [U] 70.7
H:32 [ASP] 0:967 [U] 3.58 0:1001 [U] 38.83
H:32 [ASP] 0:968 [G] 2.5 0:1000 [C] sugar:SC 38.83
H:36 [ASN] 0:968 [G] 4.19 0:1000 [C] 1.2
H:36 [ASN] 0:969 [G] 3.72 0:999 [C] 1.2
H:37 [GLY] 0:969 [G] 4.22 0:999 [C] 36.06
H:57 [ARG] 0:2519 [C] 4.94 0:2501 [G] 90.85
H:57 [ARG] 0:2520 [G] 3.14 0:2500 [C] 90.85
H:59 [ASN] 0:2519 [C] 3.89 0:2501 [G] 81.36
H:59 [ASN] 0:2520 [G] 4.58 0:2500 [C] 81.36
H:60 [ALA] 0:2519 [C] 3.61 0:2501 [G] 90.8
H:60 [ALA] 0:2520 [G] 3.87 0:2500 [C] 90.8
H:63 [ALA] 0:2518 [C] 4.06 0:2502 [C] 90.91
H:63 [ALA] 0:2519 [C] 3.28 0:2501 [G] 90.91
H:70 [ARG] 0:2504 [A] 3.18 0:2516 [G] 81.74
H:70 [ARG] 0:2517 [A] 4.81 0:2503 [A] 81.74
H:84 [ARG] 0:1001 [U] 3.66 0:967 [U] sugar:SC 47.03
H:84 [ARG] 0:1002 [G] 3.03 0:966 [U] 47.03
H:85 [ILE] 0:1002 [G] 4.37 0:966 [U] 66.84
H:86 [ARG] 0:1002 [G] 2.84 0:966 [U] sugar:BB 59.93
H:86 [ARG] 0:1003 [U] 2.78 0:965 [A] 59.93
H:87 [LYS] 0:1002 [G] 4.67 0:966 [U] 42.58
H:87 [LYS] 0:1003 [U] 3.67 0:965 [A] 42.58
H:87 [LYS] 0:1004 [C] 2.84 0:964 [G] 42.58
H:88 [PHE] 0:966 [U] 3.06 0:1002 [G] 66.05
H:88 [PHE] 0:967 [U] 3.22 0:1001 [U] 66.05
H:88 [PHE] 0:1002 [G] 3.74 0:966 [U] 66.05
H:88 [PHE] 0:1003 [U] 3.53 0:965 [A] 66.05
H:90 [PHE] 0:965 [A] 3.86 0:1003 [U] 92.97
H:90 [PHE] 0:966 [U] 3.11 0:1002 [G] 92.97
H:90 [PHE] 0:1002 [G] 4.95 0:966 [U] 92.97
H:90 [PHE] 0:1003 [U] 2.68 0:965 [A] 92.97
H:90 [PHE] 0:1004 [C] 3.35 0:964 [G] 92.97
H:94 [ARG] 0:1006 [A] 4.25 98.53
H:94 [ARG] 0:1054 [G] 3.41 0:1060 [C] 98.53
H:94 [ARG] 0:1055 [G] 2.84 0:1058 [A] 98.53
H:94 [ARG] 0:1056 [U] 4.22 98.53
H:95 [GLU] 0:1056 [U] 3.31 92.3
H:95 [GLU] 0:2494 [G] 3.99 0:2528 [U] sugar:SC 92.3
H:96 [ASN] 0:1055 [G] 3.72 0:1058 [A] 88.82
H:96 [ASN] 0:1056 [U] 2.75 88.82
H:109 [ASP] 0:2530 [C] 4.5 0:2491 [G] 67.28
H:110 [GLY] 0:2530 [C] 4.1 0:2491 [G] 98.86
H:110 [GLY] 0:2531 [U] 4.07 0:2490 [A] 98.86
H:111 [MET] 0:1054 [G] 3.72 0:1060 [C] 99.0
H:111 [MET] 0:1055 [G] 3.43 0:1058 [A] 99.0
H:111 [MET] 0:1057 [A] 3.55 99.0
H:111 [MET] 0:1058 [A] 3.74 0:1055 [G] 99.0
H:111 [MET] 0:1060 [C] 4.79 0:1054 [G] 99.0
H:111 [MET] 0:2283 [G] 3.0 99.0
H:111 [MET] 0:2310 [G] 4.66 0:2298 [C] 99.0
H:111 [MET] 0:2530 [C] 3.74 0:2491 [G] 99.0
H:111 [MET] 0:2531 [U] 3.09 0:2490 [A] 99.0
H:112 [ARG] 0:2282 [U] 3.11 sugar:SC 79.58
H:112 [ARG] 0:2283 [G] 2.81 79.58
H:112 [ARG] 0:2285 [G] 4.43 79.58
H:112 [ARG] 0:2286 [G] 4.88 79.58
H:112 [ARG] 0:2287 [C] 3.35 base:SC 79.58
H:112 [ARG] 0:2288 [G] 3.94 0:2309 [C] 79.58
H:112 [ARG] 0:2309 [C] 3.33 0:2288 [G] base/AA stacks 79.58
H:112 [ARG] 0:2310 [G] 4.86 0:2298 [C] 79.58
H:112 [ARG] 0:2531 [U] 4.77 0:2490 [A] 79.58
H:113 [ALA] 0:2283 [G] 4.36 41.39
H:113 [ALA] 0:2309 [C] 3.23 0:2288 [G] sugar:BB 41.39
H:113 [ALA] 0:2310 [G] 3.22 0:2298 [C] 41.39
H:114 [PRO] 0:1054 [G] 3.13 0:1060 [C] 82.6
H:114 [PRO] 0:1055 [G] 3.2 0:1058 [A] 82.6
H:114 [PRO] 0:2283 [G] 4.57 82.6
H:114 [PRO] 0:2309 [C] 4.43 0:2288 [G] 82.6
H:114 [PRO] 0:2310 [G] 2.96 0:2298 [C] 82.6
H:115 [PHE] 0:1006 [A] 3.95 85.29
H:115 [PHE] 0:1054 [G] 3.83 0:1060 [C] 85.29
H:115 [PHE] 0:1055 [G] 3.63 0:1058 [A] 85.29
H:115 [PHE] 0:2310 [G] 3.74 0:2298 [C] 85.29
H:115 [PHE] 0:2311 [A] 3.28 0:2297 [U] 85.29
H:116 [GLY] 0:1054 [G] 4.51 0:1060 [C] 98.58
H:116 [GLY] 0:1055 [G] 2.83 0:1058 [A] 98.58
H:124 [ARG] 0:1004 [C] 4.28 0:964 [G] 76.25
H:147 [ARG] 0:1135 [G] 4.16 0:1227 [C] 53.87
H:147 [ARG] 0:2502 [C] 3.03 0:2518 [C] 53.87
H:147 [ARG] 0:2503 [A] 2.51 0:2517 [A] 53.87
H:148 [ARG] 0:2502 [C] 4.3 0:2518 [C] 63.39
H:148 [ARG] 0:2503 [A] 4.19 0:2517 [A] 63.39
H:148 [ARG] 0:2504 [A] 3.07 0:2516 [G] 63.39
H:150 [LYS] 0:1133 [A] 5.0 0:1229 [C] 32.98
H:150 [LYS] 0:1134 [G] 3.8 0:1228 [C] 32.98
H:150 [LYS] 0:1135 [G] 4.92 0:1227 [C] 32.98
H:151 [MET] 0:1133 [A] 4.75 0:1229 [C] 38.64
H:151 [MET] 0:1134 [G] 3.08 0:1228 [C] 38.64
H:151 [MET] 0:2501 [G] 2.85 0:2519 [C] base:BB 38.64
H:151 [MET] 0:2502 [C] 2.81 0:2518 [C] 38.64
H:151 [MET] 0:2519 [C] 4.47 0:2501 [G] 38.64
H:151 [MET] 0:2520 [G] 3.86 0:2500 [C] 38.64
H:152 [LYS] 0:2501 [G] 4.27 0:2519 [C] 95.44
H:152 [LYS] 0:2502 [C] 3.64 0:2518 [C] 95.44
H:152 [LYS] 0:2517 [A] 4.56 0:2503 [A] 95.44
H:152 [LYS] 0:2518 [C] 3.09 0:2502 [C] base:SC 95.44
H:152 [LYS] 0:2519 [C] 2.52 0:2501 [G] sugar:BB 95.44
H:152 [LYS] 0:2520 [G] 3.3 0:2500 [C] 95.44
H:153 [VAL] 0:1133 [A] 4.82 0:1229 [C] 65.53
H:153 [VAL] 0:2519 [C] 4.66 0:2501 [G] 65.53
H:153 [VAL] 0:2520 [G] 3.55 0:2500 [C] 65.53
H:154 [THR] 0:1133 [A] 4.07 0:1229 [C] 80.21
H:154 [THR] 0:2520 [G] 3.17 0:2500 [C] 80.21
H:154 [THR] 0:2521 [A] 2.75 0:2499 [U] 80.21
H:155 [PRO] 0:1133 [A] 4.19 0:1229 [C] 31.43
H:155 [PRO] 0:1134 [G] 3.71 0:1228 [C] 31.43
H:156 [THR] 0:1133 [A] 3.56 0:1229 [C] 7.81
H:156 [THR] 0:1134 [G] 2.64 0:1228 [C] 7.81
H:157 [ILE] 0:1134 [G] 4.09 0:1228 [C] 39.71

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 1JJ2_H_0 H: Ribosomal protein l10e, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P60617 Ribosomal protein L10e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_H_0 7K00_l_a 0.61 0.9 2.65 0.16 Ribosomal protein L10e compare
1JJ2_H_0 7N1P_LP_23 0.63 0.91 2.32 0.18 Ribosomal protein L10e compare
1JJ2_H_0 6S0Z_K_A 0.64 0.92 2.77 0.18 Ribosomal protein L10e compare
1JJ2_H_0 7PJS_M_A 0.63 0.91 2.3 0.18 Ribosomal protein L10e compare
1JJ2_H_0 7RYG_L_A 0.60 0.91 3.14 0.18 Ribosomal protein L10e compare
1JJ2_H_0 4YBB_DN_DA 0.62 0.91 2.29 0.18 Ribosomal protein L10e compare
1JJ2_H_0 4Y4O_1Q_1A 0.64 0.92 2.15 0.2 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_1 0.62 0.77 1.64 0.34 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_2 0.88 0.81 1.64 0.39 Ribosomal protein L10e compare
1JJ2_H_0 7O7Y_BI_B5 0.78 0.94 1.36 0.39 Ribosomal protein L10e compare
1JJ2_H_0 1YHQ_H_0 0.97 1.0 0.26 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1JJ2_H_0 1VQ8_H_0 0.97 1.0 0.39 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare