RNAprotDB

All interfaces > All interologs > Interface groups > group138 > 1JJ2_H_0 vs 7PJS_M_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1JJ2_H
1JJ2_0
7PJS_M
7PJS_A
Conserved?
H:19 [TYR] 0:1007 [A] M:9 [PHE] A:911 [A] ✔
H:19 [TYR] 0:1008 [C] M:9 [PHE] A:912 [C] ✔
H:19 [TYR] 0:2312 [G] M:9 [PHE] A:2278 [A] ✔
H:94 [ARG] 0:1055 [G] M:74 [THR] A:956 [G] ✔
H:94 [ARG] 0:1056 [U] M:74 [THR] A:957 [C] ✔
H:114 [PRO] 0:1054 [G] M:85 [GLY] A:955 [PSU] ✔
H:114 [PRO] 0:1055 [G] M:85 [GLY] A:956 [G] ✔
H:114 [PRO] 0:2309 [C] M:85 [GLY] A:2275 [C] ✔
H:114 [PRO] 0:2310 [G] M:85 [GLY] A:2276 [G] ✔
H:18 [GLU] 0:963 [C] M:8 [LYS] A:868 [U] ✔
H:18 [GLU] 0:964 [G] M:8 [LYS] A:869 [G] ✔
H:151 [MET] 0:2501 [G] M:122 [ALA] A:2466 [C] ✔
H:151 [MET] 0:2502 [C] M:122 [ALA] A:2467 [C] ✔
H:151 [MET] 0:2519 [C] M:122 [ALA] A:2484 [G] ✔
H:151 [MET] 0:2520 [G] M:122 [ALA] A:2485 [G] ✔
H:63 [ALA] 0:2518 [C] M:48 [ALA] A:2483 [C] ✔
H:63 [ALA] 0:2519 [C] M:48 [ALA] A:2484 [G] ✔
H:88 [PHE] 0:966 [U] M:68 [PHE] A:871 [U] ✔
H:88 [PHE] 0:967 [U] M:68 [PHE] A:872 [U] ✔
H:88 [PHE] 0:1003 [U] M:68 [PHE] A:907 [G] ✔
H:110 [GLY] 0:2530 [C] M:81 [ARG] A:2495 [G] ✔
H:110 [GLY] 0:2531 [U] M:81 [ARG] A:2496 [C] ✔
H:115 [PHE] 0:1054 [G] M:86 [LYS] A:955 [PSU] ✔
H:115 [PHE] 0:1055 [G] M:86 [LYS] A:956 [G] ✔
H:115 [PHE] 0:2310 [G] M:86 [LYS] A:2276 [G] ✔
H:115 [PHE] 0:2311 [A] M:86 [LYS] A:2277 [G] ✔
H:60 [ALA] 0:2519 [C] M:45 [GLN] A:2484 [G] ✔
H:60 [ALA] 0:2520 [G] M:45 [GLN] A:2485 [G] ✔
H:95 [GLU] 0:1056 [U] M:75 [GLU] A:957 [C] ✔
H:152 [LYS] 0:2502 [C] M:123 [LYS] A:2467 [C] ✔
H:152 [LYS] 0:2517 [A] M:123 [LYS] A:2482 [A] ✔
H:152 [LYS] 0:2518 [C] M:123 [LYS] A:2483 [C] ✔
H:152 [LYS] 0:2519 [C] M:123 [LYS] A:2484 [G] ✔
H:152 [LYS] 0:2520 [G] M:123 [LYS] A:2485 [G] ✔
H:113 [ALA] 0:2283 [G] M:84 [LYS] A:2250 [G] ✔
H:113 [ALA] 0:2309 [C] M:84 [LYS] A:2275 [C] ✔
H:113 [ALA] 0:2310 [G] M:84 [LYS] A:2276 [G] ✔
H:59 [ASN] 0:2519 [C] M:44 [ARG] A:2484 [G] ✔
H:90 [PHE] 0:965 [A] M:70 [ASP] A:870 [U] ✔
H:90 [PHE] 0:1003 [U] M:70 [ASP] A:907 [G] ✔
H:90 [PHE] 0:1004 [C] M:70 [ASP] A:908 [C] ✔
H:154 [THR] 0:2520 [G] M:125 [PRO] A:2485 [G] ✔
H:154 [THR] 0:2521 [A] M:125 [PRO] A:2486 [C] ✔
H:156 [THR] 0:1133 [A] M:127 [LYS] A:1029 [A] ✔
H:156 [THR] 0:1134 [G] M:127 [LYS] A:1030 [C] ✔
H:111 [MET] 0:1055 [G] M:82 [MET] A:956 [G] ✔
H:111 [MET] 0:1057 [A] M:82 [MET] A:959 [A] ✔
H:111 [MET] 0:1058 [A] M:82 [MET] A:960 [A] ✔
H:111 [MET] 0:1060 [C] M:82 [MET] A:962 [G] ✔
H:111 [MET] 0:2283 [G] M:82 [MET] A:2250 [G] ✔
H:111 [MET] 0:2530 [C] M:82 [MET] A:2495 [G] ✔
H:111 [MET] 0:2531 [U] M:82 [MET] A:2496 [C] ✔
H:57 [ARG] 0:2520 [G] M:42 [THR] A:2485 [G] ✔
H:147 [ARG] 0:1135 [G] M:118 [LYS] A:1031 [G] ✔
H:148 [ARG] 0:2502 [C] M:119 [LEU] A:2467 [C] ✔
H:148 [ARG] 0:2503 [A] M:119 [LEU] A:2468 [A] ✔
H:148 [ARG] 0:2504 [A] M:119 [LEU] A:2469 [A] ✔
H:153 [VAL] 0:2519 [C] M:124 [LEU] A:2484 [G] ✔
H:153 [VAL] 0:2520 [G] M:124 [LEU] A:2485 [G] ✔
H:70 [ARG] 0:2504 [A] M:55 [ARG] A:2469 [A] ✔
H:70 [ARG] 0:2517 [A] M:55 [ARG] A:2482 [A] ✔
H:17 [ARG] 0:965 [A] M:7 [THR] A:870 [U] ✔
H:116 [GLY] 0:1054 [G] M:87 [GLY] A:955 [PSU] ✔
H:116 [GLY] 0:1055 [G] M:87 [GLY] A:956 [G] ✔
H:96 [ASN] 0:1055 [G] M:76 [LYS] A:956 [G] ✔
H:96 [ASN] 0:1056 [U] M:76 [LYS] A:957 [C] ✔
H:112 [ARG] 0:2283 [G] M:83 [GLY] A:2250 [G] ✔
H:112 [ARG] 0:2309 [C] M:83 [GLY] A:2275 [C] ✔
H:112 [ARG] 0:2310 [G] M:83 [GLY] A:2276 [G] ✔
H:86 [ARG] 0:1002 [G] M:66 [ARG] A:906 [U] ✔
H:86 [ARG] 0:1003 [U] M:66 [ARG] A:907 [G] ✔
H:109 [ASP] 0:2530 [C] M:80 [VAL] A:2495 [G] ✔
H:19 [TYR] 0:2311 [A] M:9 [PHE] A:2277 [G] ❌ 7PJS_M_A
H:94 [ARG] 0:1006 [A] M:74 [THR] A:910 [A] ❌ 7PJS_M_A
H:94 [ARG] 0:1054 [G] M:74 [THR] A:955 [PSU] ❌ 7PJS_M_A
H:114 [PRO] 0:2283 [G] M:85 [GLY] A:2250 [G] ❌ 7PJS_M_A
H:151 [MET] 0:1133 [A] M:122 [ALA] A:1029 [A] ❌ 7PJS_M_A
H:151 [MET] 0:1134 [G] M:122 [ALA] A:1030 [C] ❌ 7PJS_M_A
H:16 [ARG] 0:1005 [A] M:6 [ARG] A:909 [A] ❌ 7PJS_M_A
H:16 [ARG] 0:1007 [A] M:6 [ARG] A:911 [A] ❌ 7PJS_M_A
H:16 [ARG] 0:1008 [C] M:6 [ARG] A:912 [C] ❌ 7PJS_M_A
H:88 [PHE] 0:1002 [G] M:68 [PHE] A:906 [U] ❌ 7PJS_M_A
H:115 [PHE] 0:1006 [A] M:86 [LYS] A:910 [A] ❌ 7PJS_M_A
H:95 [GLU] 0:2494 [G] M:75 [GLU] A:2459 [A] ❌ 7PJS_M_A
H:85 [ILE] 0:1002 [G] M:65 [ILE] A:906 [U] ❌ 7PJS_M_A
H:152 [LYS] 0:2501 [G] M:123 [LYS] A:2466 [C] ❌ 7PJS_M_A
H:59 [ASN] 0:2520 [G] M:44 [ARG] A:2485 [G] ❌ 7PJS_M_A
H:90 [PHE] 0:966 [U] M:70 [ASP] A:871 [U] ❌ 7PJS_M_A
H:90 [PHE] 0:1002 [G] M:70 [ASP] A:906 [U] ❌ 7PJS_M_A
H:154 [THR] 0:1133 [A] M:125 [PRO] A:1029 [A] ❌ 7PJS_M_A
H:111 [MET] 0:1054 [G] M:82 [MET] A:955 [PSU] ❌ 7PJS_M_A
H:111 [MET] 0:2310 [G] M:82 [MET] A:2276 [G] ❌ 7PJS_M_A
H:57 [ARG] 0:2519 [C] M:42 [THR] A:2484 [G] ❌ 7PJS_M_A
H:147 [ARG] 0:2502 [C] M:118 [LYS] A:2467 [C] ❌ 7PJS_M_A
H:147 [ARG] 0:2503 [A] M:118 [LYS] A:2468 [A] ❌ 7PJS_M_A
H:153 [VAL] 0:1133 [A] M:124 [LEU] A:1029 [A] ❌ 7PJS_M_A
H:17 [ARG] 0:966 [U] M:7 [THR] A:871 [U] ❌ 7PJS_M_A
H:84 [ARG] 0:1001 [U] M:64 [TRP] A:905 [A] ❌ 7PJS_M_A
H:84 [ARG] 0:1002 [G] M:64 [TRP] A:906 [U] ❌ 7PJS_M_A
H:124 [ARG] 0:1004 [C] M:95 [LEU] A:908 [C] ❌ 7PJS_M_A
H:112 [ARG] 0:2282 [U] M:83 [GLY] A:2249 [U] ❌ 7PJS_M_A
H:112 [ARG] 0:2287 [C] M:83 [GLY] A:2254 [C] ❌ 7PJS_M_A
H:112 [ARG] 0:2288 [G] M:83 [GLY] A:2255 [G] ❌ 7PJS_M_A
H:112 [ARG] 0:2531 [U] M:83 [GLY] A:2496 [C] ❌ 7PJS_M_A
H:20 [ILE] 0:1007 [A] M:10 [ARG] A:911 [A] ❌ 7PJS_M_A
H:20 [ILE] 0:2311 [A] M:10 [ARG] A:2277 [G] ❌ 1JJ2_H_0
H:20 [ILE] 0:2312 [G] M:10 [ARG] A:2278 [A] ❌ 1JJ2_H_0
H:152 [LYS] 0:2503 [A] M:123 [LYS] A:2468 [A] ❌ 1JJ2_H_0
H:59 [ASN] 0:2518 [C] M:44 [ARG] A:2483 [C] ❌ 1JJ2_H_0
H:16 [ARG] 0:965 [A] M:6 [ARG] A:870 [U] ❌ 1JJ2_H_0
H:16 [ARG] 0:964 [G] M:6 [ARG] A:869 [G] ❌ 1JJ2_H_0
H:84 [ARG] 0:968 [G] M:64 [TRP] A:873 [C] ❌ 1JJ2_H_0
H:84 [ARG] 0:967 [U] M:64 [TRP] A:872 [U] ❌ 1JJ2_H_0
H:85 [ILE] 0:967 [U] M:65 [ILE] A:872 [U] ❌ 1JJ2_H_0
H:88 [PHE] 0:965 [A] M:68 [PHE] A:870 [U] ❌ 1JJ2_H_0
H:17 [ARG] 0:964 [G] M:7 [THR] A:869 [G] ❌ 1JJ2_H_0
H:18 [GLU] 0:1008 [C] M:8 [LYS] A:912 [C] ❌ 1JJ2_H_0
H:18 [GLU] 0:1005 [A] M:8 [LYS] A:909 [A] ❌ 1JJ2_H_0
H:110 [GLY] 0:2283 [G] M:81 [ARG] A:2250 [G] ❌ 1JJ2_H_0
H:112 [ARG] 0:1054 [G] M:83 [GLY] A:955 [PSU] ❌ 1JJ2_H_0
H:113 [ALA] 0:2282 [U] M:84 [LYS] A:2249 [U] ❌ 1JJ2_H_0
H:113 [ALA] 0:2287 [C] M:84 [LYS] A:2254 [C] ❌ 1JJ2_H_0
H:113 [ALA] 0:2288 [G] M:84 [LYS] A:2255 [G] ❌ 1JJ2_H_0
H:114 [PRO] 0:2311 [A] M:85 [GLY] A:2277 [G] ❌ 1JJ2_H_0
H:19 [TYR] 0:2363 [G] M:9 [PHE] A:2329 [U] ❌ 7PJS_A:2329 no longer at interface
H:112 [ARG] 0:2285 [G] M:83 [GLY] A:2252 [G] ❌ 7PJS_A:2252 no longer at interface
H:112 [ARG] 0:2286 [G] M:83 [GLY] A:2253 [G] ❌ 7PJS_A:2253 no longer at interface
H:39 [GLY] 0:1000 [C] M:28 [PHE] A:904 [G] ❌ 1JJ2_H:39, 1JJ2_0:1000 no longer at interface
H:109 [ASP] 0:2529 [G] M:80 [VAL] A:2494 [G] ❌ 1JJ2_0:2529 no longer at interface
H:110 [GLY] 0:2284 [G] M:81 [ARG] A:2251 [OMG] ❌ 1JJ2_0:2284 no longer at interface
H:157 [ILE] 0:1134 [G] M:128 [THR] A:1030 [C] ❌ 7PJS_M:128 no longer at interface
H:150 [LYS] 0:1133 [A] M:121 [ALA] A:1029 [A] ❌ 7PJS_M:121 no longer at interface
H:150 [LYS] 0:1134 [G] M:121 [ALA] A:1030 [C] ❌ 7PJS_M:121 no longer at interface
H:150 [LYS] 0:1135 [G] M:121 [ALA] A:1031 [G] ❌ 7PJS_M:121 no longer at interface
H:87 [LYS] 0:1002 [G] M:67 [VAL] A:906 [U] ❌ 7PJS_M:67 no longer at interface
H:87 [LYS] 0:1003 [U] M:67 [VAL] A:907 [G] ❌ 7PJS_M:67 no longer at interface
H:87 [LYS] 0:1004 [C] M:67 [VAL] A:908 [C] ❌ 7PJS_M:67 no longer at interface
H:155 [PRO] 0:1133 [A] M:126 [ILE] A:1029 [A] ❌ 7PJS_M:126 no longer at interface
H:155 [PRO] 0:1134 [G] M:126 [ILE] A:1030 [C] ❌ 7PJS_M:126 no longer at interface
H:129 [ASN] 0:1004 [C] M:100 [LYS] A:908 [C] ❌ 1JJ2_H:129 no longer at interface
H:129 [ASN] 0:1003 [U] M:100 [LYS] A:907 [G] ❌ 1JJ2_H:129 no longer at interface
H:21 [SER] 0:1006 [A] M:11 [LYS] A:910 [A] ❌ 1JJ2_H:21 no longer at interface
H:21 [SER] 0:2311 [A] M:11 [LYS] A:2277 [G] ❌ 1JJ2_H:21 no longer at interface
H:21 [SER] 0:1007 [A] M:11 [LYS] A:911 [A] ❌ 1JJ2_H:21 no longer at interface
H:21 [SER] 0:2312 [G] M:11 [LYS] A:2278 [A] ❌ 1JJ2_H:21 no longer at interface
H:39 [GLY] 0:968 [G] M:28 [PHE] A:873 [C] ❌ 1JJ2_H:39 no longer at interface
H:39 [GLY] 0:1001 [U] M:28 [PHE] A:905 [A] ❌ 1JJ2_H:39 no longer at interface
H:39 [GLY] 0:967 [U] M:28 [PHE] A:872 [U] ❌ 1JJ2_H:39 no longer at interface
H:39 [GLY] 0:1002 [G] M:28 [PHE] A:906 [U] ❌ 1JJ2_H:39 no longer at interface
H:66 [VAL] 0:2518 [C] M:51 [ARG] A:2483 [C] ❌ 1JJ2_H:66 no longer at interface
H:82 [LYS] 0:968 [G] M:62 [LYS] A:873 [C] ❌ 1JJ2_H:82 no longer at interface
H:82 [LYS] 0:969 [G] M:62 [LYS] A:874 [G] ❌ 1JJ2_H:82 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 0.91 2.3 0.18 0.72 0.92 0.61 0.92 0.63 0.58 0.14 0.35


Other pairs involving 1JJ2_H_0 or 7PJS_M_A

Total number of entries: 20

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_H_0 6AZ3_N_2 0.88 0.81 1.64 0.39 Ribosomal protein L10e compare
1JJ2_H_0 7N1P_LP_23 0.63 0.91 2.32 0.18 Ribosomal protein L10e compare
1JJ2_H_0 6S0Z_K_A 0.64 0.92 2.77 0.18 Ribosomal protein L10e compare
1JJ2_H_0 7K00_l_a 0.61 0.9 2.65 0.16 Ribosomal protein L10e compare
1JJ2_H_0 1YHQ_H_0 0.97 1.0 0.26 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1JJ2_H_0 6AZ3_N_1 0.62 0.77 1.64 0.34 Ribosomal protein L10e compare
1JJ2_H_0 4Y4O_1Q_1A 0.64 0.92 2.15 0.2 Ribosomal protein L10e compare
1JJ2_H_0 7O7Y_BI_B5 0.78 0.94 1.36 0.39 Ribosomal protein L10e compare
1JJ2_H_0 7PJS_M_A 0.63 0.91 2.3 0.18 Ribosomal protein L10e compare
1JJ2_H_0 7RYG_L_A 0.60 0.91 3.14 0.18 Ribosomal protein L10e compare
1JJ2_H_0 4YBB_DN_DA 0.62 0.91 2.29 0.18 Ribosomal protein L10e compare
1JJ2_H_0 1VQ8_H_0 0.97 1.0 0.39 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1VQ8_H_0 7PJS_M_A 0.64 0.91 2.21 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7PJS_M_A 0.64 0.91 2.27 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 7PJS_M_A 0.84 0.97 0.9 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7PJS_M_A 0.98 0.99 0.89 0.93 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
6AZ3_N_1 7PJS_M_A 0.56 0.69 3.41 0.07 Ribosomal protein L10e compare
6AZ3_N_2 7PJS_M_A 0.75 0.8 2.19 0.16 Ribosomal protein L10e compare
6S0Z_K_A 7PJS_M_A 0.83 0.96 1.72 0.52 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
7OF0_N_A 7PJS_M_A 0.63 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare