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All interfaces > All interologs > Interface groups > group138 > 1VQ8_H_0

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_H
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:1 [LYS] 0:2494 [G] 3.1 0:2528 [U] sugar:SC 92.11
H:1 [LYS] 0:2495 [U] 3.15 0:2527 [U] 92.11
H:1 [LYS] 0:2520 [G] 4.37 0:2500 [C] 92.11
H:2 [PRO] 0:2494 [G] 3.8 0:2528 [U] 78.8
H:2 [PRO] 0:2495 [U] 3.73 0:2527 [U] 78.8
H:2 [PRO] 0:2521 [A] 4.94 0:2499 [U] 78.8
H:3 [ALA] 0:2520 [G] 3.68 0:2500 [C] 68.51
H:3 [ALA] 0:2521 [A] 2.96 0:2499 [U] 68.51
H:4 [SER] 0:1056 [U] 4.44 60.96
H:4 [SER] 0:2494 [G] 4.39 0:2528 [U] 60.96
H:4 [SER] 0:2521 [A] 4.22 0:2499 [U] 60.96
H:5 [MET] 0:1056 [U] 3.38 73.87
H:5 [MET] 0:2494 [G] 3.76 0:2528 [U] 73.87
H:7 [ARG] 0:2521 [A] 2.87 0:2499 [U] 85.63
H:7 [ARG] 0:2522 [G] 2.74 0:2498 [C] 85.63
H:10 [ASP] 0:1053 [G] 4.72 0:1061 [C] 2.22
H:10 [ASP] 0:1054 [G] 4.92 0:1060 [C] 2.22
H:10 [ASP] 0:1055 [G] 4.87 0:1058 [A] 2.22
H:10 [ASP] 0:1057 [A] 4.21 2.22
H:11 [LYS] 0:1053 [G] 4.75 0:1061 [C] 42.73
H:11 [LYS] 0:1054 [G] 4.1 0:1060 [C] 42.73
H:11 [LYS] 0:1055 [G] 2.61 0:1058 [A] 42.73
H:11 [LYS] 0:1056 [U] 3.6 42.73
H:12 [PRO] 0:1006 [A] 4.07 66.85
H:12 [PRO] 0:1053 [G] 2.94 0:1061 [C] 66.85
H:12 [PRO] 0:1054 [G] 3.17 0:1060 [C] 66.85
H:13 [ALA] 0:1005 [A] 3.42 0:959 [C] 49.47
H:13 [ALA] 0:1006 [A] 3.18 49.47
H:14 [TYR] 0:1006 [A] 3.56 72.88
H:14 [TYR] 0:1007 [A] 3.61 72.88
H:14 [TYR] 0:2311 [A] 5.0 0:2297 [U] 72.88
H:15 [THR] 0:965 [A] 4.5 0:1003 [U] 84.66
H:15 [THR] 0:1004 [C] 4.21 0:964 [G] 84.66
H:15 [THR] 0:1005 [A] 2.94 0:959 [C] sugar:SC 84.66
H:16 [ARG] 0:1005 [A] 3.5 0:959 [C] 88.92
H:16 [ARG] 0:1007 [A] 2.87 88.92
H:16 [ARG] 0:1008 [C] 2.71 0:958 [G] 88.92
H:17 [ARG] 0:964 [G] 4.99 0:1004 [C] 53.05
H:17 [ARG] 0:965 [A] 3.43 0:1003 [U] 53.05
H:17 [ARG] 0:966 [U] 4.18 0:1002 [G] 53.05
H:18 [GLU] 0:963 [C] 4.76 76.24
H:18 [GLU] 0:964 [G] 3.21 0:1004 [C] 76.24
H:19 [TYR] 0:1007 [A] 3.45 base/AA stacks 83.92
H:19 [TYR] 0:1008 [C] 3.3 0:958 [G] 83.92
H:19 [TYR] 0:2311 [A] 4.56 0:2297 [U] 83.92
H:19 [TYR] 0:2312 [G] 3.52 0:2296 [C] 83.92
H:19 [TYR] 0:2363 [G] 4.86 0:2423 [C] 83.92
H:20 [ILE] 0:1007 [A] 4.15 82.96
H:27 [LYS] 0:2519 [C] 4.22 0:2501 [G] 76.59
H:31 [HIS] 0:967 [U] 3.96 0:1001 [U] 71.18
H:32 [LYS] 0:967 [U] 3.21 0:1001 [U] 45.95
H:32 [LYS] 0:968 [G] 3.66 0:1000 [C] 45.95
H:32 [LYS] 0:1001 [U] 3.19 0:967 [U] sugar:SC 45.95
H:32 [LYS] 0:1002 [G] 3.66 0:966 [U] 45.95
H:36 [LYS] 0:968 [G] 2.83 0:1000 [C] 5.57
H:36 [LYS] 0:969 [G] 3.24 0:999 [C] 5.57
H:37 [GLN] 0:969 [G] 3.93 0:999 [C] 20.7
H:37 [GLN] 0:970 [U] 2.96 20.7
H:58 [ARG] 0:2520 [G] 3.09 0:2500 [C] 89.86
H:60 [GLY] 0:2519 [C] 3.53 0:2501 [G] 82.78
H:61 [SER] 0:2519 [C] 2.64 0:2501 [G] 89.67
H:61 [SER] 0:2520 [G] 2.72 0:2500 [C] 89.67
H:64 [ALA] 0:2518 [C] 4.32 0:2502 [C] 90.76
H:64 [ALA] 0:2519 [C] 3.43 0:2501 [G] 90.76
H:71 [ARG] 0:2504 [A] 2.79 0:2516 [G] sugar:SC 75.28
H:71 [ARG] 0:2517 [A] 4.84 0:2503 [A] 75.28
H:75 [LYS] 0:2504 [A] 4.83 0:2516 [G] 50.86
H:86 [THR] 0:1002 [G] 4.71 0:966 [U] 53.57
H:87 [LEU] 0:1002 [G] 4.35 0:966 [U] 64.69
H:88 [ARG] 0:1002 [G] 2.92 0:966 [U] sugar:BB 58.23
H:88 [ARG] 0:1003 [U] 2.85 0:965 [A] 58.23
H:89 [LYS] 0:1002 [G] 4.6 0:966 [U] 39.01
H:89 [LYS] 0:1003 [U] 3.64 0:965 [A] 39.01
H:89 [LYS] 0:1004 [C] 2.83 0:964 [G] 39.01
H:90 [PHE] 0:966 [U] 3.24 0:1002 [G] 65.9
H:90 [PHE] 0:967 [U] 3.3 0:1001 [U] 65.9
H:90 [PHE] 0:1002 [G] 3.57 0:966 [U] 65.9
H:90 [PHE] 0:1003 [U] 3.44 0:965 [A] sugar:BB 65.9
H:92 [HIS] 0:965 [A] 4.06 0:1003 [U] 92.38
H:92 [HIS] 0:966 [U] 3.54 0:1002 [G] 92.38
H:92 [HIS] 0:1003 [U] 3.04 0:965 [A] base:SC 92.38
H:92 [HIS] 0:1004 [C] 3.37 0:964 [G] 92.38
H:96 [ARG] 0:1006 [A] 4.25 98.84
H:96 [ARG] 0:1054 [G] 3.23 0:1060 [C] 98.84
H:96 [ARG] 0:1055 [G] 2.66 0:1058 [A] 98.84
H:96 [ARG] 0:1056 [U] 4.51 98.84
H:97 [GLU] 0:1056 [U] 3.42 96.09
H:97 [GLU] 0:2494 [G] 4.0 0:2528 [U] 96.09
H:98 [ASN] 0:1055 [G] 3.56 0:1058 [A] 86.43
H:98 [ASN] 0:1056 [U] 2.75 86.43
H:111 [ASP] 0:2530 [C] 4.21 0:2491 [G] 52.26
H:112 [GLY] 0:2530 [C] 3.85 0:2491 [G] 98.95
H:112 [GLY] 0:2531 [U] 3.96 0:2490 [A] 98.95
H:113 [MET] 0:1054 [G] 4.0 0:1060 [C] 99.0
H:113 [MET] 0:1055 [G] 3.32 0:1058 [A] 99.0
H:113 [MET] 0:1057 [A] 3.53 99.0
H:113 [MET] 0:1058 [A] 3.83 0:1055 [G] 99.0
H:113 [MET] 0:2283 [G] 3.02 99.0
H:113 [MET] 0:2310 [G] 4.72 0:2298 [C] 99.0
H:113 [MET] 0:2530 [C] 3.76 0:2491 [G] 99.0
H:113 [MET] 0:2531 [U] 3.07 0:2490 [A] 99.0
H:114 [ARG] 0:2282 [U] 3.06 sugar:SC 77.35
H:114 [ARG] 0:2283 [G] 2.79 77.35
H:114 [ARG] 0:2285 [G] 4.51 4:74 [C] 77.35
H:114 [ARG] 0:2287 [C] 3.42 base:SC 77.35
H:114 [ARG] 0:2288 [G] 3.52 0:2309 [C] 77.35
H:114 [ARG] 0:2309 [C] 3.28 0:2288 [G] base/AA stacks 77.35
H:114 [ARG] 0:2310 [G] 4.88 0:2298 [C] 77.35
H:114 [ARG] 0:2531 [U] 4.92 0:2490 [A] 77.35
H:115 [ALA] 0:2283 [G] 4.27 38.58
H:115 [ALA] 0:2309 [C] 3.23 0:2288 [G] sugar:BB 38.58
H:115 [ALA] 0:2310 [G] 3.26 0:2298 [C] 38.58
H:116 [ALA] 0:1054 [G] 3.84 0:1060 [C] 81.79
H:116 [ALA] 0:1055 [G] 3.29 0:1058 [A] 81.79
H:116 [ALA] 0:2309 [C] 4.94 0:2288 [G] 81.79
H:116 [ALA] 0:2310 [G] 3.49 0:2298 [C] 81.79
H:117 [PHE] 0:1006 [A] 4.14 84.51
H:117 [PHE] 0:1054 [G] 3.75 0:1060 [C] 84.51
H:117 [PHE] 0:1055 [G] 3.54 0:1058 [A] 84.51
H:117 [PHE] 0:2310 [G] 3.96 0:2298 [C] 84.51
H:117 [PHE] 0:2311 [A] 3.51 0:2297 [U] 84.51
H:118 [GLY] 0:1054 [G] 4.45 0:1060 [C] 97.9
H:118 [GLY] 0:1055 [G] 2.72 0:1058 [A] 97.9
H:126 [ARG] 0:1004 [C] 4.34 0:964 [G] 74.43
H:131 [GLU] 0:1004 [C] 4.93 0:964 [G] 66.69
H:151 [ARG] 0:1135 [G] 4.49 0:1227 [C] 58.63
H:151 [ARG] 0:2502 [C] 2.55 0:2518 [C] 58.63
H:151 [ARG] 0:2503 [A] 2.7 0:2517 [A] 58.63
H:152 [ARG] 0:2502 [C] 4.24 0:2518 [C] 66.94
H:152 [ARG] 0:2503 [A] 3.53 0:2517 [A] 66.94
H:152 [ARG] 0:2504 [A] 2.93 0:2516 [G] 66.94
H:154 [TYR] 0:1133 [A] 4.98 0:1229 [C] 21.41
H:154 [TYR] 0:1134 [G] 3.66 0:1228 [C] 21.41
H:154 [TYR] 0:1135 [G] 3.02 0:1227 [C] 21.41
H:155 [ASN] 0:1134 [G] 3.61 0:1228 [C] 34.47
H:155 [ASN] 0:1135 [G] 4.81 0:1227 [C] 34.47
H:155 [ASN] 0:2501 [G] 2.97 0:2519 [C] base:BB, sugar:SC 34.47
H:155 [ASN] 0:2502 [C] 3.41 0:2518 [C] 34.47
H:155 [ASN] 0:2519 [C] 4.43 0:2501 [G] 34.47
H:155 [ASN] 0:2520 [G] 3.91 0:2500 [C] 34.47
H:156 [LYS] 0:2501 [G] 4.3 0:2519 [C] 96.14
H:156 [LYS] 0:2502 [C] 3.52 0:2518 [C] 96.14
H:156 [LYS] 0:2517 [A] 4.4 0:2503 [A] 96.14
H:156 [LYS] 0:2518 [C] 2.72 0:2502 [C] base:SC 96.14
H:156 [LYS] 0:2519 [C] 2.52 0:2501 [G] sugar:BB 96.14
H:156 [LYS] 0:2520 [G] 3.37 0:2500 [C] 96.14
H:157 [ILE] 0:1133 [A] 4.61 0:1229 [C] 68.48
H:157 [ILE] 0:2519 [C] 4.63 0:2501 [G] 68.48
H:157 [ILE] 0:2520 [G] 3.26 0:2500 [C] 68.48
H:158 [THR] 0:1133 [A] 3.87 0:1229 [C] 78.98
H:158 [THR] 0:2520 [G] 3.15 0:2500 [C] 78.98
H:158 [THR] 0:2521 [A] 2.69 0:2499 [U] 78.98
H:159 [PRO] 0:1133 [A] 4.2 0:1229 [C] 33.75
H:159 [PRO] 0:1134 [G] 4.02 0:1228 [C] 33.75
H:160 [SER] 0:1133 [A] 3.83 0:1229 [C] 22.59
H:160 [SER] 0:1134 [G] 2.65 0:1228 [C] 22.59
H:161 [CYS] 0:1134 [G] 4.37 0:1228 [C] 48.88

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 1VQ8_H_0 H: 50s ribosomal protein l10e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60617 Ribosomal protein L10e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_H_0 7O7Y_BI_B5 0.79 0.94 1.27 0.35 Ribosomal protein L10e compare
1VQ8_H_0 7K00_l_a 0.62 0.9 2.5 0.14 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_1 0.65 0.77 1.62 0.24 Ribosomal protein L10e compare
1VQ8_H_0 4YBB_DN_DA 0.62 0.91 2.19 0.16 Ribosomal protein L10e compare
1VQ8_H_0 7N1P_LP_23 0.63 0.91 2.2 0.16 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_2 0.89 0.81 1.6 0.39 Ribosomal protein L10e compare
1VQ8_H_0 7RYG_L_A 0.62 0.91 3.04 0.16 Ribosomal protein L10e compare
1VQ8_H_0 7PJS_M_A 0.64 0.91 2.21 0.16 Ribosomal protein L10e compare
1VQ8_H_0 4Y4O_1Q_1A 0.66 0.92 2.06 0.18 Ribosomal protein L10e compare
1VQ8_H_0 1YHQ_H_0 1.00 1.0 0.26 1.0 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1VQ8_H_0 6S0Z_K_A 0.67 0.92 2.67 0.18 Ribosomal protein L10e compare
1JJ2_H_0 1VQ8_H_0 0.97 1.0 0.39 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare