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All interfaces > All interologs > Interface groups > group138 > 1VQ8_H_0 vs 1YHQ_H_0

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Licorice
Surface

RNA

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Licorice
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Common contacts -

1VQ8_H
1VQ8_0
1YHQ_H
1YHQ_0
Conserved?
H:114 [ARG] 0:2282 [U] H:117 [ARG] 0:2282 [U] ✔
H:114 [ARG] 0:2283 [G] H:117 [ARG] 0:2283 [G] ✔
H:114 [ARG] 0:2285 [G] H:117 [ARG] 0:2285 [G] ✔
H:114 [ARG] 0:2287 [C] H:117 [ARG] 0:2287 [C] ✔
H:114 [ARG] 0:2288 [G] H:117 [ARG] 0:2288 [G] ✔
H:114 [ARG] 0:2309 [C] H:117 [ARG] 0:2309 [C] ✔
H:114 [ARG] 0:2310 [G] H:117 [ARG] 0:2310 [G] ✔
H:114 [ARG] 0:2531 [U] H:117 [ARG] 0:2531 [U] ✔
H:19 [TYR] 0:1007 [A] H:22 [TYR] 0:1007 [A] ✔
H:19 [TYR] 0:1008 [C] H:22 [TYR] 0:1008 [C] ✔
H:19 [TYR] 0:2311 [A] H:22 [TYR] 0:2311 [A] ✔
H:19 [TYR] 0:2312 [G] H:22 [TYR] 0:2312 [G] ✔
H:19 [TYR] 0:2363 [G] H:22 [TYR] 0:2363 [G] ✔
H:96 [ARG] 0:1006 [A] H:99 [ARG] 0:1006 [A] ✔
H:96 [ARG] 0:1054 [G] H:99 [ARG] 0:1054 [G] ✔
H:96 [ARG] 0:1055 [G] H:99 [ARG] 0:1055 [G] ✔
H:96 [ARG] 0:1056 [U] H:99 [ARG] 0:1056 [U] ✔
H:18 [GLU] 0:963 [C] H:21 [GLU] 0:963 [C] ✔
H:18 [GLU] 0:964 [G] H:21 [GLU] 0:964 [G] ✔
H:116 [ALA] 0:1054 [G] H:119 [ALA] 0:1054 [G] ✔
H:116 [ALA] 0:1055 [G] H:119 [ALA] 0:1055 [G] ✔
H:116 [ALA] 0:2309 [C] H:119 [ALA] 0:2309 [C] ✔
H:116 [ALA] 0:2310 [G] H:119 [ALA] 0:2310 [G] ✔
H:1 [LYS] 0:2494 [G] H:4 [LYS] 0:2494 [G] ✔
H:1 [LYS] 0:2495 [U] H:4 [LYS] 0:2495 [U] ✔
H:1 [LYS] 0:2520 [G] H:4 [LYS] 0:2520 [G] ✔
H:27 [LYS] 0:2519 [C] H:30 [LYS] 0:2519 [C] ✔
H:32 [LYS] 0:967 [U] H:35 [LYS] 0:967 [U] ✔
H:32 [LYS] 0:968 [G] H:35 [LYS] 0:968 [G] ✔
H:32 [LYS] 0:1001 [U] H:35 [LYS] 0:1001 [U] ✔
H:32 [LYS] 0:1002 [G] H:35 [LYS] 0:1002 [G] ✔
H:36 [LYS] 0:968 [G] H:39 [LYS] 0:968 [G] ✔
H:36 [LYS] 0:969 [G] H:39 [LYS] 0:969 [G] ✔
H:117 [PHE] 0:1006 [A] H:120 [PHE] 0:1006 [A] ✔
H:117 [PHE] 0:1054 [G] H:120 [PHE] 0:1054 [G] ✔
H:117 [PHE] 0:1055 [G] H:120 [PHE] 0:1055 [G] ✔
H:117 [PHE] 0:2310 [G] H:120 [PHE] 0:2310 [G] ✔
H:117 [PHE] 0:2311 [A] H:120 [PHE] 0:2311 [A] ✔
H:16 [ARG] 0:1005 [A] H:19 [ARG] 0:1005 [A] ✔
H:16 [ARG] 0:1007 [A] H:19 [ARG] 0:1007 [A] ✔
H:16 [ARG] 0:1008 [C] H:19 [ARG] 0:1008 [C] ✔
H:98 [ASN] 0:1055 [G] H:101 [ASN] 0:1055 [G] ✔
H:98 [ASN] 0:1056 [U] H:101 [ASN] 0:1056 [U] ✔
H:88 [ARG] 0:1002 [G] H:91 [ARG] 0:1002 [G] ✔
H:88 [ARG] 0:1003 [U] H:91 [ARG] 0:1003 [U] ✔
H:160 [SER] 0:1133 [A] H:163 [SER] 0:1133 [A] ✔
H:160 [SER] 0:1134 [G] H:163 [SER] 0:1134 [G] ✔
H:14 [TYR] 0:1006 [A] H:17 [TYR] 0:1006 [A] ✔
H:14 [TYR] 0:1007 [A] H:17 [TYR] 0:1007 [A] ✔
H:14 [TYR] 0:2311 [A] H:17 [TYR] 0:2311 [A] ✔
H:87 [LEU] 0:1002 [G] H:90 [LEU] 0:1002 [G] ✔
H:161 [CYS] 0:1134 [G] H:164 [CYS] 0:1134 [G] ✔
H:11 [LYS] 0:1053 [G] H:14 [LYS] 0:1053 [G] ✔
H:11 [LYS] 0:1054 [G] H:14 [LYS] 0:1054 [G] ✔
H:11 [LYS] 0:1055 [G] H:14 [LYS] 0:1055 [G] ✔
H:11 [LYS] 0:1056 [U] H:14 [LYS] 0:1056 [U] ✔
H:3 [ALA] 0:2520 [G] H:6 [ALA] 0:2520 [G] ✔
H:3 [ALA] 0:2521 [A] H:6 [ALA] 0:2521 [A] ✔
H:156 [LYS] 0:2501 [G] H:159 [LYS] 0:2501 [G] ✔
H:156 [LYS] 0:2502 [C] H:159 [LYS] 0:2502 [C] ✔
H:156 [LYS] 0:2517 [A] H:159 [LYS] 0:2517 [A] ✔
H:156 [LYS] 0:2518 [C] H:159 [LYS] 0:2518 [C] ✔
H:156 [LYS] 0:2519 [C] H:159 [LYS] 0:2519 [C] ✔
H:156 [LYS] 0:2520 [G] H:159 [LYS] 0:2520 [G] ✔
H:126 [ARG] 0:1004 [C] H:129 [ARG] 0:1004 [C] ✔
H:61 [SER] 0:2519 [C] H:64 [SER] 0:2519 [C] ✔
H:61 [SER] 0:2520 [G] H:64 [SER] 0:2520 [G] ✔
H:92 [HIS] 0:965 [A] H:95 [HIS] 0:965 [A] ✔
H:92 [HIS] 0:966 [U] H:95 [HIS] 0:966 [U] ✔
H:92 [HIS] 0:1003 [U] H:95 [HIS] 0:1003 [U] ✔
H:92 [HIS] 0:1004 [C] H:95 [HIS] 0:1004 [C] ✔
H:90 [PHE] 0:966 [U] H:93 [PHE] 0:966 [U] ✔
H:90 [PHE] 0:967 [U] H:93 [PHE] 0:967 [U] ✔
H:90 [PHE] 0:1002 [G] H:93 [PHE] 0:1002 [G] ✔
H:90 [PHE] 0:1003 [U] H:93 [PHE] 0:1003 [U] ✔
H:157 [ILE] 0:1133 [A] H:160 [ILE] 0:1133 [A] ✔
H:157 [ILE] 0:2519 [C] H:160 [ILE] 0:2519 [C] ✔
H:157 [ILE] 0:2520 [G] H:160 [ILE] 0:2520 [G] ✔
H:152 [ARG] 0:2502 [C] H:155 [ARG] 0:2502 [C] ✔
H:152 [ARG] 0:2503 [A] H:155 [ARG] 0:2503 [A] ✔
H:152 [ARG] 0:2504 [A] H:155 [ARG] 0:2504 [A] ✔
H:64 [ALA] 0:2518 [C] H:67 [ALA] 0:2518 [C] ✔
H:64 [ALA] 0:2519 [C] H:67 [ALA] 0:2519 [C] ✔
H:4 [SER] 0:1056 [U] H:7 [SER] 0:1056 [U] ✔
H:4 [SER] 0:2494 [G] H:7 [SER] 0:2494 [G] ✔
H:4 [SER] 0:2521 [A] H:7 [SER] 0:2521 [A] ✔
H:158 [THR] 0:1133 [A] H:161 [THR] 0:1133 [A] ✔
H:158 [THR] 0:2520 [G] H:161 [THR] 0:2520 [G] ✔
H:158 [THR] 0:2521 [A] H:161 [THR] 0:2521 [A] ✔
H:118 [GLY] 0:1054 [G] H:121 [GLY] 0:1054 [G] ✔
H:118 [GLY] 0:1055 [G] H:121 [GLY] 0:1055 [G] ✔
H:2 [PRO] 0:2494 [G] H:5 [PRO] 0:2494 [G] ✔
H:2 [PRO] 0:2495 [U] H:5 [PRO] 0:2495 [U] ✔
H:2 [PRO] 0:2521 [A] H:5 [PRO] 0:2521 [A] ✔
H:159 [PRO] 0:1133 [A] H:162 [PRO] 0:1133 [A] ✔
H:159 [PRO] 0:1134 [G] H:162 [PRO] 0:1134 [G] ✔
H:115 [ALA] 0:2283 [G] H:118 [ALA] 0:2283 [G] ✔
H:115 [ALA] 0:2309 [C] H:118 [ALA] 0:2309 [C] ✔
H:115 [ALA] 0:2310 [G] H:118 [ALA] 0:2310 [G] ✔
H:71 [ARG] 0:2504 [A] H:74 [ARG] 0:2504 [A] ✔
H:71 [ARG] 0:2517 [A] H:74 [ARG] 0:2517 [A] ✔
H:155 [ASN] 0:1134 [G] H:158 [ASN] 0:1134 [G] ✔
H:155 [ASN] 0:1135 [G] H:158 [ASN] 0:1135 [G] ✔
H:155 [ASN] 0:2501 [G] H:158 [ASN] 0:2501 [G] ✔
H:155 [ASN] 0:2502 [C] H:158 [ASN] 0:2502 [C] ✔
H:155 [ASN] 0:2519 [C] H:158 [ASN] 0:2519 [C] ✔
H:155 [ASN] 0:2520 [G] H:158 [ASN] 0:2520 [G] ✔
H:154 [TYR] 0:1133 [A] H:157 [TYR] 0:1133 [A] ✔
H:154 [TYR] 0:1134 [G] H:157 [TYR] 0:1134 [G] ✔
H:154 [TYR] 0:1135 [G] H:157 [TYR] 0:1135 [G] ✔
H:111 [ASP] 0:2530 [C] H:114 [ASP] 0:2530 [C] ✔
H:60 [GLY] 0:2519 [C] H:63 [GLY] 0:2519 [C] ✔
H:17 [ARG] 0:965 [A] H:20 [ARG] 0:965 [A] ✔
H:17 [ARG] 0:966 [U] H:20 [ARG] 0:966 [U] ✔
H:12 [PRO] 0:1006 [A] H:15 [PRO] 0:1006 [A] ✔
H:12 [PRO] 0:1053 [G] H:15 [PRO] 0:1053 [G] ✔
H:12 [PRO] 0:1054 [G] H:15 [PRO] 0:1054 [G] ✔
H:151 [ARG] 0:1135 [G] H:154 [ARG] 0:1135 [G] ✔
H:151 [ARG] 0:2502 [C] H:154 [ARG] 0:2502 [C] ✔
H:151 [ARG] 0:2503 [A] H:154 [ARG] 0:2503 [A] ✔
H:89 [LYS] 0:1002 [G] H:92 [LYS] 0:1002 [G] ✔
H:89 [LYS] 0:1003 [U] H:92 [LYS] 0:1003 [U] ✔
H:89 [LYS] 0:1004 [C] H:92 [LYS] 0:1004 [C] ✔
H:86 [THR] 0:1002 [G] H:89 [THR] 0:1002 [G] ✔
H:31 [HIS] 0:967 [U] H:34 [HIS] 0:967 [U] ✔
H:58 [ARG] 0:2520 [G] H:61 [ARG] 0:2520 [G] ✔
H:5 [MET] 0:1056 [U] H:8 [MET] 0:1056 [U] ✔
H:5 [MET] 0:2494 [G] H:8 [MET] 0:2494 [G] ✔
H:10 [ASP] 0:1053 [G] H:13 [ASP] 0:1053 [G] ✔
H:10 [ASP] 0:1054 [G] H:13 [ASP] 0:1054 [G] ✔
H:10 [ASP] 0:1055 [G] H:13 [ASP] 0:1055 [G] ✔
H:10 [ASP] 0:1057 [A] H:13 [ASP] 0:1057 [A] ✔
H:131 [GLU] 0:1004 [C] H:134 [GLU] 0:1004 [C] ✔
H:7 [ARG] 0:2521 [A] H:10 [ARG] 0:2521 [A] ✔
H:7 [ARG] 0:2522 [G] H:10 [ARG] 0:2522 [G] ✔
H:13 [ALA] 0:1005 [A] H:16 [ALA] 0:1005 [A] ✔
H:13 [ALA] 0:1006 [A] H:16 [ALA] 0:1006 [A] ✔
H:20 [ILE] 0:1007 [A] H:23 [ILE] 0:1007 [A] ✔
H:113 [MET] 0:1054 [G] H:116 [MET] 0:1054 [G] ✔
H:113 [MET] 0:1055 [G] H:116 [MET] 0:1055 [G] ✔
H:113 [MET] 0:1057 [A] H:116 [MET] 0:1057 [A] ✔
H:113 [MET] 0:1058 [A] H:116 [MET] 0:1058 [A] ✔
H:113 [MET] 0:2283 [G] H:116 [MET] 0:2283 [G] ✔
H:113 [MET] 0:2310 [G] H:116 [MET] 0:2310 [G] ✔
H:113 [MET] 0:2530 [C] H:116 [MET] 0:2530 [C] ✔
H:113 [MET] 0:2531 [U] H:116 [MET] 0:2531 [U] ✔
H:97 [GLU] 0:1056 [U] H:100 [GLU] 0:1056 [U] ✔
H:97 [GLU] 0:2494 [G] H:100 [GLU] 0:2494 [G] ✔
H:37 [GLN] 0:969 [G] H:40 [GLN] 0:969 [G] ✔
H:37 [GLN] 0:970 [U] H:40 [GLN] 0:970 [U] ✔
H:15 [THR] 0:965 [A] H:18 [THR] 0:965 [A] ✔
H:15 [THR] 0:1004 [C] H:18 [THR] 0:1004 [C] ✔
H:15 [THR] 0:1005 [A] H:18 [THR] 0:1005 [A] ✔
H:112 [GLY] 0:2530 [C] H:115 [GLY] 0:2530 [C] ✔
H:112 [GLY] 0:2531 [U] H:115 [GLY] 0:2531 [U] ✔
H:17 [ARG] 0:964 [G] H:20 [ARG] 0:964 [G] ❌ 1YHQ_H_0
H:11 [LYS] 0:1057 [A] H:14 [LYS] 0:1057 [A] ❌ 1VQ8_H_0
H:58 [ARG] 0:2519 [C] H:61 [ARG] 0:2519 [C] ❌ 1VQ8_H_0
H:75 [LYS] 0:2504 [A] H:78 [LYS] 0:2504 [A] ❌ 1YHQ_H:78 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e Archaeal large subunit ribosomal RNA 1.0 0.26 1.00 1.0 1.0 1.0 1.0 1.00 0.98 0.91 0.25


Other pairs involving 1VQ8_H_0 or 1YHQ_H_0

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_H_0 7O7Y_BI_B5 0.79 0.94 1.27 0.35 Ribosomal protein L10e compare
1VQ8_H_0 7K00_l_a 0.62 0.9 2.5 0.14 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_1 0.65 0.77 1.62 0.24 Ribosomal protein L10e compare
1VQ8_H_0 4YBB_DN_DA 0.62 0.91 2.19 0.16 Ribosomal protein L10e compare
1VQ8_H_0 7N1P_LP_23 0.63 0.91 2.2 0.16 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_2 0.89 0.81 1.6 0.39 Ribosomal protein L10e compare
1VQ8_H_0 7RYG_L_A 0.62 0.91 3.04 0.16 Ribosomal protein L10e compare
1VQ8_H_0 7PJS_M_A 0.64 0.91 2.21 0.16 Ribosomal protein L10e compare
1VQ8_H_0 4Y4O_1Q_1A 0.66 0.92 2.06 0.18 Ribosomal protein L10e compare
1VQ8_H_0 1YHQ_H_0 1.00 1.0 0.26 1.0 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1VQ8_H_0 6S0Z_K_A 0.67 0.92 2.67 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4YBB_DN_DA 0.62 0.91 2.28 0.16 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_2 0.87 0.81 1.64 0.35 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1YHQ_H_0 6S0Z_K_A 0.67 0.92 2.76 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4Y4O_1Q_1A 0.66 0.92 2.12 0.18 Ribosomal protein L10e compare
1YHQ_H_0 7PJS_M_A 0.64 0.91 2.27 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7O7Y_BI_B5 0.79 0.94 1.35 0.36 Ribosomal protein L10e compare
1YHQ_H_0 7RYG_L_A 0.61 0.91 3.14 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7K00_l_a 0.63 0.9 2.63 0.14 Ribosomal protein L10e compare
1YHQ_H_0 7N1P_LP_23 0.64 0.91 2.3 0.16 Ribosomal protein L10e compare
1JJ2_H_0 1YHQ_H_0 0.97 1.0 0.26 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1JJ2_H_0 1VQ8_H_0 0.97 1.0 0.39 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare