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All interfaces > All interologs > Interface groups > group138 > 1YHQ_H_0

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_H
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:4 [LYS] 0:2494 [G] 2.92 0:2528 [U] sugar:SC 93.99
H:4 [LYS] 0:2495 [U] 3.03 0:2527 [U] 93.99
H:4 [LYS] 0:2520 [G] 4.42 0:2500 [C] 93.99
H:5 [PRO] 0:2494 [G] 3.94 0:2528 [U] 86.15
H:5 [PRO] 0:2495 [U] 3.8 0:2527 [U] 86.15
H:5 [PRO] 0:2521 [A] 4.89 0:2499 [U] 86.15
H:6 [ALA] 0:2520 [G] 3.77 0:2500 [C] 69.0
H:6 [ALA] 0:2521 [A] 2.98 0:2499 [U] 69.0
H:7 [SER] 0:1056 [U] 4.34 68.13
H:7 [SER] 0:2494 [G] 4.39 0:2528 [U] 68.13
H:7 [SER] 0:2521 [A] 4.32 0:2499 [U] 68.13
H:8 [MET] 0:1056 [U] 3.36 75.03
H:8 [MET] 0:2494 [G] 3.61 0:2528 [U] 75.03
H:10 [ARG] 0:2521 [A] 2.89 0:2499 [U] 84.66
H:10 [ARG] 0:2522 [G] 2.78 0:2498 [C] 84.66
H:13 [ASP] 0:1053 [G] 4.81 0:1061 [C] 21.96
H:13 [ASP] 0:1054 [G] 4.78 0:1060 [C] 21.96
H:13 [ASP] 0:1055 [G] 4.84 0:1058 [A] 21.96
H:13 [ASP] 0:1057 [A] 4.21 21.96
H:14 [LYS] 0:1053 [G] 4.79 0:1061 [C] 53.28
H:14 [LYS] 0:1054 [G] 4.21 0:1060 [C] 53.28
H:14 [LYS] 0:1055 [G] 2.65 0:1058 [A] 53.28
H:14 [LYS] 0:1056 [U] 3.57 53.28
H:14 [LYS] 0:1057 [A] 4.96 53.28
H:15 [PRO] 0:1006 [A] 4.09 69.38
H:15 [PRO] 0:1053 [G] 3.08 0:1061 [C] 69.38
H:15 [PRO] 0:1054 [G] 3.32 0:1060 [C] 69.38
H:16 [ALA] 0:1005 [A] 3.34 0:959 [C] 60.97
H:16 [ALA] 0:1006 [A] 3.19 60.97
H:17 [TYR] 0:1006 [A] 3.54 77.62
H:17 [TYR] 0:1007 [A] 3.51 77.62
H:17 [TYR] 0:2311 [A] 4.98 0:2297 [U] 77.62
H:18 [THR] 0:965 [A] 4.46 0:1003 [U] 89.56
H:18 [THR] 0:1004 [C] 4.09 0:964 [G] 89.56
H:18 [THR] 0:1005 [A] 2.92 0:959 [C] sugar:SC 89.56
H:19 [ARG] 0:1005 [A] 3.39 0:959 [C] 91.44
H:19 [ARG] 0:1007 [A] 2.82 91.44
H:19 [ARG] 0:1008 [C] 2.8 0:958 [G] 91.44
H:20 [ARG] 0:965 [A] 3.65 0:1003 [U] 61.0
H:20 [ARG] 0:966 [U] 3.77 0:1002 [G] 61.0
H:21 [GLU] 0:963 [C] 4.76 77.97
H:21 [GLU] 0:964 [G] 3.48 0:1004 [C] 77.97
H:22 [TYR] 0:1007 [A] 3.24 base/AA stacks 82.19
H:22 [TYR] 0:1008 [C] 3.04 0:958 [G] 82.19
H:22 [TYR] 0:2311 [A] 4.66 0:2297 [U] 82.19
H:22 [TYR] 0:2312 [G] 3.63 0:2296 [C] 82.19
H:22 [TYR] 0:2363 [G] 4.85 0:2423 [C] 82.19
H:23 [ILE] 0:1007 [A] 4.28 84.16
H:30 [LYS] 0:2519 [C] 4.19 0:2501 [G] 78.7
H:34 [HIS] 0:967 [U] 3.59 0:1001 [U] 69.05
H:35 [LYS] 0:967 [U] 3.12 0:1001 [U] 38.91
H:35 [LYS] 0:968 [G] 3.62 0:1000 [C] 38.91
H:35 [LYS] 0:1001 [U] 3.19 0:967 [U] sugar:SC 38.91
H:35 [LYS] 0:1002 [G] 3.39 0:966 [U] sugar:SC 38.91
H:39 [LYS] 0:968 [G] 3.02 0:1000 [C] 2.41
H:39 [LYS] 0:969 [G] 3.08 0:999 [C] 2.41
H:40 [GLN] 0:969 [G] 3.77 0:999 [C] 38.81
H:40 [GLN] 0:970 [U] 3.42 38.81
H:61 [ARG] 0:2519 [C] 4.86 0:2501 [G] 89.19
H:61 [ARG] 0:2520 [G] 3.14 0:2500 [C] 89.19
H:63 [GLY] 0:2519 [C] 3.68 0:2501 [G] 82.81
H:64 [SER] 0:2519 [C] 2.7 0:2501 [G] 92.89
H:64 [SER] 0:2520 [G] 2.83 0:2500 [C] 92.89
H:67 [ALA] 0:2518 [C] 4.19 0:2502 [C] 91.98
H:67 [ALA] 0:2519 [C] 3.3 0:2501 [G] 91.98
H:74 [ARG] 0:2504 [A] 3.04 0:2516 [G] 81.38
H:74 [ARG] 0:2517 [A] 4.88 0:2503 [A] 81.38
H:89 [THR] 0:1002 [G] 4.72 0:966 [U] 51.64
H:90 [LEU] 0:1002 [G] 4.36 0:966 [U] 72.8
H:91 [ARG] 0:1002 [G] 2.77 0:966 [U] sugar:BB 70.13
H:91 [ARG] 0:1003 [U] 2.94 0:965 [A] 70.13
H:92 [LYS] 0:1002 [G] 4.67 0:966 [U] 42.84
H:92 [LYS] 0:1003 [U] 3.61 0:965 [A] 42.84
H:92 [LYS] 0:1004 [C] 2.73 0:964 [G] 42.84
H:93 [PHE] 0:966 [U] 3.07 0:1002 [G] 74.38
H:93 [PHE] 0:967 [U] 3.18 0:1001 [U] 74.38
H:93 [PHE] 0:1002 [G] 3.61 0:966 [U] 74.38
H:93 [PHE] 0:1003 [U] 3.33 0:965 [A] sugar:BB 74.38
H:95 [HIS] 0:965 [A] 3.84 0:1003 [U] 93.77
H:95 [HIS] 0:966 [U] 3.55 0:1002 [G] 93.77
H:95 [HIS] 0:1003 [U] 2.97 0:965 [A] base:SC 93.77
H:95 [HIS] 0:1004 [C] 3.42 0:964 [G] 93.77
H:99 [ARG] 0:1006 [A] 4.24 99.0
H:99 [ARG] 0:1054 [G] 3.36 0:1060 [C] 99.0
H:99 [ARG] 0:1055 [G] 2.69 0:1058 [A] 99.0
H:99 [ARG] 0:1056 [U] 4.3 99.0
H:100 [GLU] 0:1056 [U] 3.34 94.09
H:100 [GLU] 0:2494 [G] 3.95 0:2528 [U] 94.09
H:101 [ASN] 0:1055 [G] 3.62 0:1058 [A] 88.89
H:101 [ASN] 0:1056 [U] 2.72 88.89
H:114 [ASP] 0:2530 [C] 4.74 0:2491 [G] 68.42
H:115 [GLY] 0:2530 [C] 3.97 0:2491 [G] 98.84
H:115 [GLY] 0:2531 [U] 3.91 0:2490 [A] 98.84
H:116 [MET] 0:1054 [G] 3.76 0:1060 [C] 98.97
H:116 [MET] 0:1055 [G] 3.33 0:1058 [A] 98.97
H:116 [MET] 0:1057 [A] 3.49 98.97
H:116 [MET] 0:1058 [A] 3.81 0:1055 [G] 98.97
H:116 [MET] 0:2283 [G] 3.12 98.97
H:116 [MET] 0:2310 [G] 4.51 0:2298 [C] 98.97
H:116 [MET] 0:2530 [C] 3.85 0:2491 [G] 98.97
H:116 [MET] 0:2531 [U] 3.04 0:2490 [A] 98.97
H:117 [ARG] 0:2282 [U] 3.03 sugar:SC 84.53
H:117 [ARG] 0:2283 [G] 2.77 84.53
H:117 [ARG] 0:2285 [G] 4.49 84.53
H:117 [ARG] 0:2287 [C] 3.36 base:SC 84.53
H:117 [ARG] 0:2288 [G] 3.82 0:2309 [C] 84.53
H:117 [ARG] 0:2309 [C] 3.39 0:2288 [G] base/AA stacks 84.53
H:117 [ARG] 0:2310 [G] 4.9 0:2298 [C] 84.53
H:117 [ARG] 0:2531 [U] 4.83 0:2490 [A] 84.53
H:118 [ALA] 0:2283 [G] 4.35 49.52
H:118 [ALA] 0:2309 [C] 3.08 0:2288 [G] sugar:BB 49.52
H:118 [ALA] 0:2310 [G] 3.21 0:2298 [C] 49.52
H:119 [ALA] 0:1054 [G] 3.89 0:1060 [C] 86.17
H:119 [ALA] 0:1055 [G] 3.34 0:1058 [A] 86.17
H:119 [ALA] 0:2309 [C] 4.92 0:2288 [G] 86.17
H:119 [ALA] 0:2310 [G] 3.53 0:2298 [C] 86.17
H:120 [PHE] 0:1006 [A] 4.19 89.81
H:120 [PHE] 0:1054 [G] 3.8 0:1060 [C] 89.81
H:120 [PHE] 0:1055 [G] 3.6 0:1058 [A] 89.81
H:120 [PHE] 0:2310 [G] 3.93 0:2298 [C] 89.81
H:120 [PHE] 0:2311 [A] 3.33 0:2297 [U] 89.81
H:121 [GLY] 0:1054 [G] 4.5 0:1060 [C] 98.52
H:121 [GLY] 0:1055 [G] 2.77 0:1058 [A] 98.52
H:129 [ARG] 0:1004 [C] 4.31 0:964 [G] 76.42
H:134 [GLU] 0:1004 [C] 4.67 0:964 [G] 68.41
H:154 [ARG] 0:1135 [G] 4.26 0:1227 [C] 56.75
H:154 [ARG] 0:2502 [C] 3.08 0:2518 [C] 56.75
H:154 [ARG] 0:2503 [A] 2.47 0:2517 [A] 56.75
H:155 [ARG] 0:2502 [C] 4.18 0:2518 [C] 68.07
H:155 [ARG] 0:2503 [A] 4.06 0:2517 [A] 68.07
H:155 [ARG] 0:2504 [A] 3.02 0:2516 [G] 68.07
H:157 [TYR] 0:1133 [A] 4.96 0:1229 [C] 50.42
H:157 [TYR] 0:1134 [G] 3.73 0:1228 [C] 50.42
H:157 [TYR] 0:1135 [G] 2.9 0:1227 [C] 50.42
H:158 [ASN] 0:1134 [G] 3.38 0:1228 [C] 34.39
H:158 [ASN] 0:1135 [G] 4.92 0:1227 [C] 34.39
H:158 [ASN] 0:2501 [G] 2.69 0:2519 [C] base:BB, sugar:SC 34.39
H:158 [ASN] 0:2502 [C] 3.37 0:2518 [C] 34.39
H:158 [ASN] 0:2519 [C] 4.11 0:2501 [G] 34.39
H:158 [ASN] 0:2520 [G] 3.93 0:2500 [C] 34.39
H:159 [LYS] 0:2501 [G] 4.34 0:2519 [C] 97.07
H:159 [LYS] 0:2502 [C] 3.63 0:2518 [C] 97.07
H:159 [LYS] 0:2517 [A] 4.41 0:2503 [A] 97.07
H:159 [LYS] 0:2518 [C] 2.82 0:2502 [C] base:SC 97.07
H:159 [LYS] 0:2519 [C] 2.53 0:2501 [G] sugar:BB 97.07
H:159 [LYS] 0:2520 [G] 3.37 0:2500 [C] 97.07
H:160 [ILE] 0:1133 [A] 4.91 0:1229 [C] 68.3
H:160 [ILE] 0:2519 [C] 4.67 0:2501 [G] 68.3
H:160 [ILE] 0:2520 [G] 3.63 0:2500 [C] 68.3
H:161 [THR] 0:1133 [A] 4.01 0:1229 [C] 83.36
H:161 [THR] 0:2520 [G] 3.24 0:2500 [C] 83.36
H:161 [THR] 0:2521 [A] 2.82 0:2499 [U] 83.36
H:162 [PRO] 0:1133 [A] 4.38 0:1229 [C] 42.66
H:162 [PRO] 0:1134 [G] 3.98 0:1228 [C] 42.66
H:163 [SER] 0:1133 [A] 3.64 0:1229 [C] 23.67
H:163 [SER] 0:1134 [G] 2.64 0:1228 [C] 23.67
H:164 [CYS] 0:1134 [G] 4.21 0:1228 [C] 32.36

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 1YHQ_H_0 H: 50s ribosomal protein l10e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P60617 Ribosomal protein L10e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_H_0 1YHQ_H_0 1.00 1.0 0.26 1.0 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1YHQ_H_0 4YBB_DN_DA 0.62 0.91 2.28 0.16 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_2 0.87 0.81 1.64 0.35 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1YHQ_H_0 6S0Z_K_A 0.67 0.92 2.76 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4Y4O_1Q_1A 0.66 0.92 2.12 0.18 Ribosomal protein L10e compare
1YHQ_H_0 7PJS_M_A 0.64 0.91 2.27 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7O7Y_BI_B5 0.79 0.94 1.35 0.36 Ribosomal protein L10e compare
1YHQ_H_0 7RYG_L_A 0.61 0.91 3.14 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7K00_l_a 0.63 0.9 2.63 0.14 Ribosomal protein L10e compare
1YHQ_H_0 7N1P_LP_23 0.64 0.91 2.3 0.16 Ribosomal protein L10e compare
1JJ2_H_0 1YHQ_H_0 0.97 1.0 0.26 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare