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All interfaces > All interologs > Interface groups > group138 > 1YHQ_H_0 vs 4YBB_DN_DA

Interface analysis


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Common contacts -

1YHQ_H
1YHQ_0
4YBB_DN
4YBB_DA
Conserved?
H:116 [MET] 0:1055 [G] DN:82 [MET] DA:956 [G] ✔
H:116 [MET] 0:1057 [A] DN:82 [MET] DA:959 [A] ✔
H:116 [MET] 0:1058 [A] DN:82 [MET] DA:960 [A] ✔
H:116 [MET] 0:2283 [G] DN:82 [MET] DA:2250 [G] ✔
H:116 [MET] 0:2530 [C] DN:82 [MET] DA:2495 [G] ✔
H:116 [MET] 0:2531 [U] DN:82 [MET] DA:2496 [C] ✔
H:155 [ARG] 0:2502 [C] DN:119 [LEU] DA:2467 [C] ✔
H:155 [ARG] 0:2503 [A] DN:119 [LEU] DA:2468 [A] ✔
H:100 [GLU] 0:1056 [U] DN:75 [GLU] DA:957 [C] ✔
H:93 [PHE] 0:966 [U] DN:68 [PHE] DA:871 [U] ✔
H:93 [PHE] 0:967 [U] DN:68 [PHE] DA:872 [U] ✔
H:93 [PHE] 0:1003 [U] DN:68 [PHE] DA:907 [G] ✔
H:99 [ARG] 0:1055 [G] DN:74 [THR] DA:956 [G] ✔
H:99 [ARG] 0:1056 [U] DN:74 [THR] DA:957 [C] ✔
H:117 [ARG] 0:2283 [G] DN:83 [GLY] DA:2250 [G] ✔
H:117 [ARG] 0:2309 [C] DN:83 [GLY] DA:2275 [C] ✔
H:117 [ARG] 0:2310 [G] DN:83 [GLY] DA:2276 [G] ✔
H:118 [ALA] 0:2283 [G] DN:84 [LYS] DA:2250 [G] ✔
H:118 [ALA] 0:2309 [C] DN:84 [LYS] DA:2275 [C] ✔
H:118 [ALA] 0:2310 [G] DN:84 [LYS] DA:2276 [G] ✔
H:119 [ALA] 0:1055 [G] DN:85 [GLY] DA:956 [G] ✔
H:119 [ALA] 0:2309 [C] DN:85 [GLY] DA:2275 [C] ✔
H:119 [ALA] 0:2310 [G] DN:85 [GLY] DA:2276 [G] ✔
H:163 [SER] 0:1133 [A] DN:127 [LYS] DA:1029 [A] ✔
H:163 [SER] 0:1134 [G] DN:127 [LYS] DA:1030 [C] ✔
H:161 [THR] 0:2520 [G] DN:125 [PRO] DA:2485 [G] ✔
H:161 [THR] 0:2521 [A] DN:125 [PRO] DA:2486 [C] ✔
H:22 [TYR] 0:1007 [A] DN:9 [PHE] DA:911 [A] ✔
H:22 [TYR] 0:1008 [C] DN:9 [PHE] DA:912 [C] ✔
H:22 [TYR] 0:2312 [G] DN:9 [PHE] DA:2278 [A] ✔
H:134 [GLU] 0:1004 [C] DN:100 [LYS] DA:908 [C] ✔
H:67 [ALA] 0:2518 [C] DN:48 [ALA] DA:2483 [C] ✔
H:67 [ALA] 0:2519 [C] DN:48 [ALA] DA:2484 [G] ✔
H:121 [GLY] 0:1054 [G] DN:87 [GLY] DA:955 [PSU] ✔
H:121 [GLY] 0:1055 [G] DN:87 [GLY] DA:956 [G] ✔
H:160 [ILE] 0:2519 [C] DN:124 [LEU] DA:2484 [G] ✔
H:160 [ILE] 0:2520 [G] DN:124 [LEU] DA:2485 [G] ✔
H:91 [ARG] 0:1002 [G] DN:66 [ARG] DA:906 [U] ✔
H:91 [ARG] 0:1003 [U] DN:66 [ARG] DA:907 [G] ✔
H:74 [ARG] 0:2504 [A] DN:55 [ARG] DA:2469 [A] ✔
H:158 [ASN] 0:2501 [G] DN:122 [ALA] DA:2466 [C] ✔
H:158 [ASN] 0:2502 [C] DN:122 [ALA] DA:2467 [C] ✔
H:158 [ASN] 0:2519 [C] DN:122 [ALA] DA:2484 [G] ✔
H:158 [ASN] 0:2520 [G] DN:122 [ALA] DA:2485 [G] ✔
H:115 [GLY] 0:2530 [C] DN:81 [4D4] DA:2495 [G] ✔
H:115 [GLY] 0:2531 [U] DN:81 [4D4] DA:2496 [C] ✔
H:63 [GLY] 0:2519 [C] DN:44 [ARG] DA:2484 [G] ✔
H:20 [ARG] 0:965 [A] DN:7 [THR] DA:870 [U] ✔
H:21 [GLU] 0:963 [C] DN:8 [LYS] DA:868 [U] ✔
H:21 [GLU] 0:964 [G] DN:8 [LYS] DA:869 [G] ✔
H:120 [PHE] 0:1054 [G] DN:86 [LYS] DA:955 [PSU] ✔
H:120 [PHE] 0:1055 [G] DN:86 [LYS] DA:956 [G] ✔
H:120 [PHE] 0:2310 [G] DN:86 [LYS] DA:2276 [G] ✔
H:120 [PHE] 0:2311 [A] DN:86 [LYS] DA:2277 [G] ✔
H:61 [ARG] 0:2520 [G] DN:42 [THR] DA:2485 [G] ✔
H:114 [ASP] 0:2530 [C] DN:80 [VAL] DA:2495 [G] ✔
H:95 [HIS] 0:965 [A] DN:70 [ASP] DA:870 [U] ✔
H:95 [HIS] 0:1003 [U] DN:70 [ASP] DA:907 [G] ✔
H:95 [HIS] 0:1004 [C] DN:70 [ASP] DA:908 [C] ✔
H:64 [SER] 0:2519 [C] DN:45 [GLN] DA:2484 [G] ✔
H:64 [SER] 0:2520 [G] DN:45 [GLN] DA:2485 [G] ✔
H:101 [ASN] 0:1055 [G] DN:76 [LYS] DA:956 [G] ✔
H:101 [ASN] 0:1056 [U] DN:76 [LYS] DA:957 [C] ✔
H:159 [LYS] 0:2502 [C] DN:123 [LYS] DA:2467 [C] ✔
H:159 [LYS] 0:2517 [A] DN:123 [LYS] DA:2482 [A] ✔
H:159 [LYS] 0:2518 [C] DN:123 [LYS] DA:2483 [C] ✔
H:159 [LYS] 0:2519 [C] DN:123 [LYS] DA:2484 [G] ✔
H:159 [LYS] 0:2520 [G] DN:123 [LYS] DA:2485 [G] ✔
H:23 [ILE] 0:1007 [A] DN:10 [ARG] DA:911 [A] ❌ 4YBB_DN_DA
H:116 [MET] 0:1054 [G] DN:82 [MET] DA:955 [PSU] ❌ 4YBB_DN_DA
H:116 [MET] 0:2310 [G] DN:82 [MET] DA:2276 [G] ❌ 4YBB_DN_DA
H:155 [ARG] 0:2504 [A] DN:119 [LEU] DA:2469 [A] ❌ 4YBB_DN_DA
H:100 [GLU] 0:2494 [G] DN:75 [GLU] DA:2459 [A] ❌ 4YBB_DN_DA
H:93 [PHE] 0:1002 [G] DN:68 [PHE] DA:906 [U] ❌ 4YBB_DN_DA
H:99 [ARG] 0:1006 [A] DN:74 [THR] DA:910 [A] ❌ 4YBB_DN_DA
H:99 [ARG] 0:1054 [G] DN:74 [THR] DA:955 [PSU] ❌ 4YBB_DN_DA
H:117 [ARG] 0:2282 [U] DN:83 [GLY] DA:2249 [U] ❌ 4YBB_DN_DA
H:117 [ARG] 0:2285 [G] DN:83 [GLY] DA:2252 [G] ❌ 4YBB_DN_DA
H:117 [ARG] 0:2288 [G] DN:83 [GLY] DA:2255 [G] ❌ 4YBB_DN_DA
H:117 [ARG] 0:2531 [U] DN:83 [GLY] DA:2496 [C] ❌ 4YBB_DN_DA
H:90 [LEU] 0:1002 [G] DN:65 [ILE] DA:906 [U] ❌ 4YBB_DN_DA
H:119 [ALA] 0:1054 [G] DN:85 [GLY] DA:955 [PSU] ❌ 4YBB_DN_DA
H:19 [ARG] 0:1005 [A] DN:6 [ARG] DA:909 [A] ❌ 4YBB_DN_DA
H:19 [ARG] 0:1007 [A] DN:6 [ARG] DA:911 [A] ❌ 4YBB_DN_DA
H:19 [ARG] 0:1008 [C] DN:6 [ARG] DA:912 [C] ❌ 4YBB_DN_DA
H:161 [THR] 0:1133 [A] DN:125 [PRO] DA:1029 [A] ❌ 4YBB_DN_DA
H:22 [TYR] 0:2311 [A] DN:9 [PHE] DA:2277 [G] ❌ 4YBB_DN_DA
H:160 [ILE] 0:1133 [A] DN:124 [LEU] DA:1029 [A] ❌ 4YBB_DN_DA
H:74 [ARG] 0:2517 [A] DN:55 [ARG] DA:2482 [A] ❌ 4YBB_DN_DA
H:158 [ASN] 0:1134 [G] DN:122 [ALA] DA:1030 [C] ❌ 4YBB_DN_DA
H:20 [ARG] 0:966 [U] DN:7 [THR] DA:871 [U] ❌ 4YBB_DN_DA
H:89 [THR] 0:1002 [G] DN:64 [TRP] DA:906 [U] ❌ 4YBB_DN_DA
H:120 [PHE] 0:1006 [A] DN:86 [LYS] DA:910 [A] ❌ 4YBB_DN_DA
H:61 [ARG] 0:2519 [C] DN:42 [THR] DA:2484 [G] ❌ 4YBB_DN_DA
H:95 [HIS] 0:966 [U] DN:70 [ASP] DA:871 [U] ❌ 4YBB_DN_DA
H:159 [LYS] 0:2501 [G] DN:123 [LYS] DA:2466 [C] ❌ 4YBB_DN_DA
H:23 [ILE] 0:2311 [A] DN:10 [ARG] DA:2277 [G] ❌ 1YHQ_H_0
H:23 [ILE] 0:2312 [G] DN:10 [ARG] DA:2278 [A] ❌ 1YHQ_H_0
H:134 [GLU] 0:1003 [U] DN:100 [LYS] DA:907 [G] ❌ 1YHQ_H_0
H:63 [GLY] 0:2518 [C] DN:44 [ARG] DA:2483 [C] ❌ 1YHQ_H_0
H:19 [ARG] 0:965 [A] DN:6 [ARG] DA:870 [U] ❌ 1YHQ_H_0
H:19 [ARG] 0:964 [G] DN:6 [ARG] DA:869 [G] ❌ 1YHQ_H_0
H:19 [ARG] 0:966 [U] DN:6 [ARG] DA:871 [U] ❌ 1YHQ_H_0
H:89 [THR] 0:967 [U] DN:64 [TRP] DA:872 [U] ❌ 1YHQ_H_0
H:89 [THR] 0:968 [G] DN:64 [TRP] DA:873 [C] ❌ 1YHQ_H_0
H:90 [LEU] 0:967 [U] DN:65 [ILE] DA:872 [U] ❌ 1YHQ_H_0
H:93 [PHE] 0:965 [A] DN:68 [PHE] DA:870 [U] ❌ 1YHQ_H_0
H:20 [ARG] 0:964 [G] DN:7 [THR] DA:869 [G] ❌ 1YHQ_H_0
H:21 [GLU] 0:1007 [A] DN:8 [LYS] DA:911 [A] ❌ 1YHQ_H_0
H:21 [GLU] 0:1008 [C] DN:8 [LYS] DA:912 [C] ❌ 1YHQ_H_0
H:21 [GLU] 0:1005 [A] DN:8 [LYS] DA:909 [A] ❌ 1YHQ_H_0
H:115 [GLY] 0:2285 [G] DN:81 [4D4] DA:2252 [G] ❌ 1YHQ_H_0
H:115 [GLY] 0:2283 [G] DN:81 [4D4] DA:2250 [G] ❌ 1YHQ_H_0
H:117 [ARG] 0:1054 [G] DN:83 [GLY] DA:955 [PSU] ❌ 1YHQ_H_0
H:118 [ALA] 0:2282 [U] DN:84 [LYS] DA:2249 [U] ❌ 1YHQ_H_0
H:118 [ALA] 0:2288 [G] DN:84 [LYS] DA:2255 [G] ❌ 1YHQ_H_0
H:119 [ALA] 0:2311 [A] DN:85 [GLY] DA:2277 [G] ❌ 1YHQ_H_0
H:157 [TYR] 0:1135 [G] DN:121 [ALA] DA:1031 [G] ❌ 4YBB_DN:121, 4YBB_DA:1031 no longer at interface
H:117 [ARG] 0:2287 [C] DN:83 [GLY] DA:2254 [C] ❌ 4YBB_DA:2254 no longer at interface
H:154 [ARG] 0:1135 [G] DN:118 [LYS] DA:1031 [G] ❌ 4YBB_DN:118, 4YBB_DA:1031 no longer at interface
H:22 [TYR] 0:2363 [G] DN:9 [PHE] DA:2329 [U] ❌ 4YBB_DA:2329 no longer at interface
H:158 [ASN] 0:1135 [G] DN:122 [ALA] DA:1031 [G] ❌ 4YBB_DA:1031 no longer at interface
H:163 [SER] 0:1132 [A] DN:127 [LYS] DA:1028 [A] ❌ 1YHQ_0:1132 no longer at interface
H:74 [ARG] 0:2505 [G] DN:55 [ARG] DA:2470 [G] ❌ 1YHQ_0:2505 no longer at interface
H:114 [ASP] 0:2529 [G] DN:80 [VAL] DA:2494 [G] ❌ 1YHQ_0:2529 no longer at interface
H:115 [GLY] 0:2286 [G] DN:81 [4D4] DA:2253 [G] ❌ 1YHQ_0:2286 no longer at interface
H:115 [GLY] 0:2284 [G] DN:81 [4D4] DA:2251 [OMG] ❌ 1YHQ_0:2284 no longer at interface
H:116 [MET] 0:1060 [C] DN:82 [MET] DA:962 [G] ❌ 1YHQ_0:1060 no longer at interface
H:92 [LYS] 0:1002 [G] DN:67 [VAL] DA:906 [U] ❌ 4YBB_DN:67 no longer at interface
H:92 [LYS] 0:1003 [U] DN:67 [VAL] DA:907 [G] ❌ 4YBB_DN:67 no longer at interface
H:92 [LYS] 0:1004 [C] DN:67 [VAL] DA:908 [C] ❌ 4YBB_DN:67 no longer at interface
H:157 [TYR] 0:1133 [A] DN:121 [ALA] DA:1029 [A] ❌ 4YBB_DN:121 no longer at interface
H:157 [TYR] 0:1134 [G] DN:121 [ALA] DA:1030 [C] ❌ 4YBB_DN:121 no longer at interface
H:164 [CYS] 0:1134 [G] DN:128 [THR] DA:1030 [C] ❌ 4YBB_DN:128 no longer at interface
H:154 [ARG] 0:2502 [C] DN:118 [LYS] DA:2467 [C] ❌ 4YBB_DN:118 no longer at interface
H:154 [ARG] 0:2503 [A] DN:118 [LYS] DA:2468 [A] ❌ 4YBB_DN:118 no longer at interface
H:162 [PRO] 0:1133 [A] DN:126 [ILE] DA:1029 [A] ❌ 4YBB_DN:126 no longer at interface
H:162 [PRO] 0:1134 [G] DN:126 [ILE] DA:1030 [C] ❌ 4YBB_DN:126 no longer at interface
H:129 [ARG] 0:1004 [C] DN:95 [LEU] DA:908 [C] ❌ 4YBB_DN:95 no longer at interface
H:24 [THR] 0:1007 [A] DN:11 [LYS] DA:911 [A] ❌ 1YHQ_H:24 no longer at interface
H:24 [THR] 0:1006 [A] DN:11 [LYS] DA:910 [A] ❌ 1YHQ_H:24 no longer at interface
H:24 [THR] 0:2311 [A] DN:11 [LYS] DA:2277 [G] ❌ 1YHQ_H:24 no longer at interface
H:24 [THR] 0:2312 [G] DN:11 [LYS] DA:2278 [A] ❌ 1YHQ_H:24 no longer at interface
H:42 [ASP] 0:967 [U] DN:28 [PHE] DA:872 [U] ❌ 1YHQ_H:42 no longer at interface
H:42 [ASP] 0:1002 [G] DN:28 [PHE] DA:906 [U] ❌ 1YHQ_H:42 no longer at interface
H:42 [ASP] 0:1001 [U] DN:28 [PHE] DA:905 [A] ❌ 1YHQ_H:42 no longer at interface
H:42 [ASP] 0:968 [G] DN:28 [PHE] DA:873 [C] ❌ 1YHQ_H:42 no longer at interface
H:66 [GLU] 0:2518 [C] DN:47 [GLU] DA:2483 [C] ❌ 1YHQ_H:66 no longer at interface
H:70 [LEU] 0:2518 [C] DN:51 [ARG] DA:2483 [C] ❌ 1YHQ_H:70 no longer at interface
H:87 [LYS] 0:968 [G] DN:62 [LYS] DA:873 [C] ❌ 1YHQ_H:87 no longer at interface
H:87 [LYS] 0:969 [G] DN:62 [LYS] DA:874 [G] ❌ 1YHQ_H:87 no longer at interface
H:131 [GLN] 0:1004 [C] DN:97 [GLN] DA:908 [C] ❌ 1YHQ_H:131 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 0.91 2.28 0.16 0.74 0.92 0.59 0.9 0.62 0.64 0.20 0.42


Other pairs involving 1YHQ_H_0 or 4YBB_DN_DA

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Q_1A 4YBB_DN_DA 0.82 0.97 0.96 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7RYG_L_A 0.92 0.99 2.02 0.84 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7N1P_LP_23 0.98 0.99 0.58 1.0 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6AZ3_N_2 0.74 0.8 2.18 0.16 Ribosomal protein L10e compare
4YBB_DN_DA 7OF0_N_A 0.57 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6S0Z_K_A 0.83 0.96 1.48 0.5 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7O7Y_BI_B5 0.72 0.88 2.4 0.14 Ribosomal protein L10e compare
4YBB_DN_DA 6AZ3_N_1 0.55 0.69 3.25 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 7PJS_M_A 0.98 0.99 0.89 0.93 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7K00_l_a 0.97 1.0 0.27 0.96 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
1VQ8_H_0 4YBB_DN_DA 0.62 0.91 2.19 0.16 Ribosomal protein L10e compare
1VQ8_H_0 1YHQ_H_0 1.00 1.0 0.26 1.0 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1YHQ_H_0 4YBB_DN_DA 0.62 0.91 2.28 0.16 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_2 0.87 0.81 1.64 0.35 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1YHQ_H_0 6S0Z_K_A 0.67 0.92 2.76 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4Y4O_1Q_1A 0.66 0.92 2.12 0.18 Ribosomal protein L10e compare
1YHQ_H_0 7PJS_M_A 0.64 0.91 2.27 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7O7Y_BI_B5 0.79 0.94 1.35 0.36 Ribosomal protein L10e compare
1YHQ_H_0 7RYG_L_A 0.61 0.91 3.14 0.16 Ribosomal protein L10e compare
1YHQ_H_0 7K00_l_a 0.63 0.9 2.63 0.14 Ribosomal protein L10e compare
1YHQ_H_0 7N1P_LP_23 0.64 0.91 2.3 0.16 Ribosomal protein L10e compare
1JJ2_H_0 1YHQ_H_0 0.97 1.0 0.26 0.66 Ribosomal protein L10e Archaeal large subunit ribosomal RNA compare
1JJ2_H_0 4YBB_DN_DA 0.62 0.91 2.29 0.18 Ribosomal protein L10e compare