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All interfaces > All interologs > Interface groups > group138 > 4Y4O_1Q_1A

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1Q
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1Q:3 [MET] 1A:918 [U] 4.19 1A:952 [G] 13.33
1Q:4 [PRO] 1A:917 [A] 3.72 1A:953 [U] 86.37
1Q:4 [PRO] 1A:918 [U] 3.41 1A:952 [G] 86.37
1Q:5 [ARG] 1A:917 [A] 3.81 1A:953 [U] 64.44
1Q:5 [ARG] 1A:918 [U] 2.77 1A:952 [G] 64.44
1Q:5 [ARG] 1A:919 [A] 4.22 1A:951 [U] 64.44
1Q:5 [ARG] 1A:945 [A] 3.91 1A:924 [U] 64.44
1Q:6 [ARG] 1A:916 [G] 3.32 1A:954 [C] 66.99
1Q:6 [ARG] 1A:917 [A] 3.06 1A:953 [U] 66.99
1Q:6 [ARG] 1A:918 [U] 4.69 1A:952 [G] 66.99
1Q:7 [MET] 1A:916 [G] 4.31 1A:954 [C] 51.27
1Q:7 [MET] 1A:917 [A] 4.68 1A:953 [U] 51.27
1Q:8 [LYS] 1A:915 [U] 3.12 1A:955 [A] base:SC 81.74
1Q:8 [LYS] 1A:916 [G] 3.87 1A:954 [C] 81.74
1Q:8 [LYS] 1A:958 [C] 2.97 1A:911 [G] 81.74
1Q:9 [TYR] 1A:957 [A] 3.0 base/AA stacks 48.16
1Q:9 [TYR] 1A:958 [C] 2.58 1A:911 [G] 48.16
1Q:9 [TYR] 1A:2290 [A] 4.18 1A:2274 [U] 48.16
1Q:10 [ARG] 1A:2290 [A] 4.02 1A:2274 [U] 67.6
1Q:11 [LYS] 1A:956 [A] 3.03 base:BB 90.62
1Q:11 [LYS] 1A:957 [A] 2.62 base:BB 90.62
1Q:11 [LYS] 1A:2289 [G] 3.55 1A:2275 [C] 90.62
1Q:11 [LYS] 1A:2290 [A] 3.36 1A:2274 [U] 90.62
1Q:12 [GLN] 1A:955 [A] 4.63 1A:915 [U] 0.26
1Q:12 [GLN] 1A:956 [A] 3.75 0.26
1Q:12 [GLN] 1A:957 [A] 4.39 0.26
1Q:12 [GLN] 1A:1000 [C] 4.15 1A:1007 [G] 0.26
1Q:13 [GLN] 1A:956 [A] 3.03 base:BB base/AA stacks 61.86
1Q:13 [GLN] 1A:999 [G] 3.44 1A:1008 [U] 61.86
1Q:13 [GLN] 1A:1000 [C] 3.61 1A:1007 [G] 61.86
1Q:13 [GLN] 1A:2276 [C] 4.94 1A:2288 [G] 61.86
1Q:13 [GLN] 1A:2277 [U] 3.54 1A:2286 [A] 61.86
1Q:13 [GLN] 1A:2288 [G] 3.94 1A:2276 [C] 61.86
1Q:14 [ARG] 1A:999 [G] 3.38 1A:1008 [U] 77.43
1Q:14 [ARG] 1A:1000 [C] 3.12 1A:1007 [G] 77.43
1Q:14 [ARG] 1A:1001 [G] 2.13 1A:1005 [A] 77.43
1Q:14 [ARG] 1A:1002 [A] 4.42 77.43
1Q:14 [ARG] 1A:1003 [U] 3.53 77.43
1Q:15 [GLY] 1A:998 [A] 4.63 1A:1009 [C] 45.22
1Q:15 [GLY] 1A:999 [G] 2.58 1A:1008 [U] 45.22
1Q:16 [ARG] 1A:996 [C] 4.58 1A:1011 [G] 63.49
1Q:16 [ARG] 1A:997 [G] 2.52 1A:1010 [C] 63.49
1Q:16 [ARG] 1A:998 [A] 2.96 1A:1009 [C] 63.49
1Q:17 [LEU] 1A:1003 [U] 4.43 0.0
1Q:18 [LYS] 1A:908 [A] 4.1 1A:962 [G] 42.64
1Q:18 [LYS] 1A:909 [G] 3.33 1A:961 [C] 42.64
1Q:18 [LYS] 1A:998 [A] 3.27 1A:1009 [C] 42.64
1Q:20 [ALA] 1A:910 [A] 4.86 1A:959 [U] 13.35
1Q:21 [THR] 1A:910 [A] 4.73 1A:959 [U] 49.96
1Q:22 [LYS] 1A:910 [A] 3.44 1A:959 [U] 15.31
1Q:22 [LYS] 1A:911 [G] 2.6 1A:958 [C] base:SC 15.31
1Q:22 [LYS] 1A:912 [C] 4.37 1A:914 [C] 15.31
1Q:22 [LYS] 1A:954 [C] 3.31 1A:916 [G] 15.31
1Q:22 [LYS] 1A:955 [A] 3.66 1A:915 [U] 15.31
1Q:23 [GLY] 1A:953 [U] 3.94 1A:917 [A] 48.95
1Q:23 [GLY] 1A:954 [C] 4.11 1A:916 [G] 48.95
1Q:24 [GLY] 1A:952 [G] 4.46 1A:918 [U] 45.68
1Q:24 [GLY] 1A:953 [U] 2.91 1A:917 [A] 45.68
1Q:25 [ASP] 1A:953 [U] 4.5 1A:917 [A] 56.37
1Q:26 [TYR] 1A:952 [G] 2.84 1A:918 [U] 18.53
1Q:26 [TYR] 1A:953 [U] 3.7 1A:917 [A] 18.53
1Q:28 [ALA] 1A:951 [U] 4.41 1A:919 [A] 36.79
1Q:28 [ALA] 1A:952 [G] 4.05 1A:918 [U] 36.79
1Q:29 [PHE] 1A:919 [A] 4.49 1A:951 [U] 50.75
1Q:29 [PHE] 1A:951 [U] 3.58 1A:919 [A] 50.75
1Q:29 [PHE] 1A:952 [G] 3.56 1A:918 [U] 50.75
1Q:40 [ALA] 1A:1003 [U] 3.56 62.62
1Q:41 [TRP] 1A:1003 [U] 2.91 base:BB 27.73
1Q:43 [THR] 1A:2497 [G] 4.66 1A:2477 [C] 82.29
1Q:45 [GLN] 1A:2495 [C] 4.52 1A:2479 [C] 58.47
1Q:45 [GLN] 1A:2496 [G] 3.89 1A:2478 [C] 58.47
1Q:46 [GLN] 1A:2496 [G] 3.48 1A:2478 [C] 85.55
1Q:46 [GLN] 1A:2497 [G] 2.82 1A:2477 [C] 85.55
1Q:48 [GLU] 1A:2495 [C] 4.83 1A:2479 [C] 87.12
1Q:49 [ALA] 1A:2495 [C] 3.45 1A:2479 [C] 77.47
1Q:49 [ALA] 1A:2496 [G] 3.33 1A:2478 [C] 77.47
1Q:52 [VAL] 1A:2494 [G] 3.5 1A:2480 [G] 69.32
1Q:56 [ARG] 1A:2481 [A] 3.02 1A:2493 [G] 78.68
1Q:56 [ARG] 1A:2482 [G] 4.15 1A:2492 [C] 78.68
1Q:56 [ARG] 1A:2494 [G] 4.43 1A:2480 [G] 78.68
1Q:59 [ARG] 1A:1120 [G] 2.92 75.22
1Q:59 [ARG] 1A:1121 [C] 2.78 1A:1109 [G] 75.22
1Q:59 [ARG] 1A:2482 [G] 4.75 1A:2492 [C] 75.22
1Q:60 [ARG] 1A:942 [A] 3.52 74.1
1Q:60 [ARG] 1A:1121 [C] 4.7 1A:1109 [G] 74.1
1Q:60 [ARG] 1A:1122 [C] 2.93 74.1
1Q:61 [GLY] 1A:1122 [C] 4.35 37.21
1Q:63 [LYS] 1A:920 [G] 3.22 1A:950 [C] 62.25
1Q:63 [LYS] 1A:921 [G] 3.58 1A:949 [C] 62.25
1Q:65 [PHE] 1A:920 [G] 4.11 1A:950 [C] 43.85
1Q:66 [ILE] 1A:919 [A] 3.73 1A:951 [U] 69.27
1Q:67 [ARG] 1A:952 [G] 2.64 1A:918 [U] sugar:SC 72.37
1Q:67 [ARG] 1A:953 [U] 4.33 1A:917 [A] 72.37
1Q:69 [PHE] 1A:917 [A] 4.8 1A:953 [U] 57.2
1Q:69 [PHE] 1A:918 [U] 3.6 1A:952 [G] 57.2
1Q:69 [PHE] 1A:919 [A] 3.64 1A:951 [U] 57.2
1Q:71 [ASP] 1A:917 [A] 3.98 1A:953 [U] 66.83
1Q:71 [ASP] 1A:954 [C] 2.76 1A:916 [G] sugar:SC 66.83
1Q:71 [ASP] 1A:955 [A] 4.99 1A:915 [U] 66.83
1Q:74 [TYR] 1A:1002 [A] 3.47 73.54
1Q:74 [TYR] 1A:1003 [U] 3.21 73.54
1Q:75 [THR] 1A:1001 [G] 3.76 1A:1005 [A] 93.93
1Q:75 [THR] 1A:1002 [A] 3.59 93.93
1Q:75 [THR] 1A:1003 [U] 4.64 93.93
1Q:76 [LYS] 1A:1002 [A] 3.57 66.55
1Q:76 [LYS] 1A:2471 [A] 2.96 1A:2505 [U] sugar:SC 66.55
1Q:76 [LYS] 1A:2472 [U] 4.52 1A:2504 [U] 66.55
1Q:77 [LYS] 1A:1001 [G] 3.63 1A:1005 [A] 92.09
1Q:77 [LYS] 1A:1002 [A] 3.09 92.09
1Q:79 [LEU] 1A:2471 [A] 3.47 1A:2505 [U] 38.57
1Q:79 [LEU] 1A:2472 [U] 4.3 1A:2504 [U] 38.57
1Q:80 [GLU] 1A:2505 [U] 2.82 1A:2471 [A] sugar:SC, sugar:SC 78.31
1Q:80 [GLU] 1A:2506 [G] 3.21 1A:2469 [U] 78.31
1Q:80 [GLU] 1A:2507 [G] 4.59 1A:2468 [C] 78.31
1Q:81 [VAL] 1A:2506 [G] 4.78 1A:2469 [U] 61.67
1Q:81 [VAL] 1A:2507 [G] 3.58 1A:2468 [C] 61.67
1Q:82 [ARG] 1A:2262 [G] 4.1 98.95
1Q:82 [ARG] 1A:2263 [OMG] 2.93 base:SC 98.95
1Q:82 [ARG] 1A:2264 [G] 4.94 98.95
1Q:82 [ARG] 1A:2462 [A] 4.72 1A:2085 [C] 98.95
1Q:82 [ARG] 1A:2463 [A] 4.86 1A:2083 [G] 98.95
1Q:82 [ARG] 1A:2507 [G] 2.94 1A:2468 [C] 98.95
1Q:82 [ARG] 1A:2508 [C] 3.33 1A:2467 [G] 98.95
1Q:83 [MET] 1A:1001 [G] 3.53 1A:1005 [A] 98.86
1Q:83 [MET] 1A:1004 [A] 3.35 98.86
1Q:83 [MET] 1A:1005 [A] 3.6 1A:1001 [G] 98.86
1Q:83 [MET] 1A:1007 [G] 4.44 1A:1000 [C] 98.86
1Q:83 [MET] 1A:2262 [G] 3.26 98.86
1Q:83 [MET] 1A:2507 [G] 3.43 1A:2468 [C] 98.86
1Q:83 [MET] 1A:2508 [C] 3.07 1A:2467 [G] 98.86
1Q:84 [GLY] 1A:2262 [G] 3.24 98.81
1Q:84 [GLY] 1A:2287 [C] 3.24 1A:2267 [G] 98.81
1Q:84 [GLY] 1A:2288 [G] 3.49 1A:2276 [C] 98.81
1Q:85 [LYS] 1A:2262 [G] 4.45 83.37
1Q:85 [LYS] 1A:2267 [G] 3.95 1A:2287 [C] 83.37
1Q:85 [LYS] 1A:2287 [C] 2.77 1A:2267 [G] sugar:BB 83.37
1Q:85 [LYS] 1A:2288 [G] 3.45 1A:2276 [C] 83.37
1Q:86 [GLY] 1A:1000 [C] 4.72 1A:1007 [G] 97.44
1Q:86 [GLY] 1A:1001 [G] 4.06 1A:1005 [A] 97.44
1Q:86 [GLY] 1A:2287 [C] 3.54 1A:2267 [G] 97.44
1Q:86 [GLY] 1A:2288 [G] 2.73 1A:2276 [C] 97.44
1Q:86 [GLY] 1A:2289 [G] 3.59 1A:2275 [C] 97.44
1Q:87 [LYS] 1A:1000 [C] 2.83 1A:1007 [G] 99.0
1Q:87 [LYS] 1A:1001 [G] 3.24 1A:1005 [A] 99.0
1Q:87 [LYS] 1A:2288 [G] 3.35 1A:2276 [C] 99.0
1Q:87 [LYS] 1A:2289 [G] 2.92 1A:2275 [C] 99.0
1Q:88 [GLY] 1A:1000 [C] 4.91 1A:1007 [G] 98.42
1Q:88 [GLY] 1A:1001 [G] 2.79 1A:1005 [A] 98.42
1Q:88 [GLY] 1A:1002 [A] 4.97 98.42
1Q:101 [ARG] 1A:953 [U] 2.8 1A:917 [A] sugar:SC 54.28
1Q:101 [ARG] 1A:954 [C] 3.9 1A:916 [G] 54.28
1Q:119 [ARG] 1A:1077 [G] 4.58 1A:1169 [C] 52.8
1Q:119 [ARG] 1A:2479 [C] 4.16 1A:2495 [C] 52.8
1Q:119 [ARG] 1A:2480 [G] 2.74 1A:2494 [G] 52.8
1Q:120 [ILE] 1A:2479 [C] 3.98 1A:2495 [C] 3.43
1Q:120 [ILE] 1A:2480 [G] 3.93 1A:2494 [G] 3.43
1Q:120 [ILE] 1A:2481 [A] 4.29 1A:2493 [G] 3.43
1Q:123 [HIS] 1A:1076 [G] 3.64 1A:1170 [C] 42.35
1Q:123 [HIS] 1A:1077 [G] 4.2 1A:1169 [C] 42.35
1Q:123 [HIS] 1A:2478 [C] 3.87 1A:2496 [G] 42.35
1Q:123 [HIS] 1A:2479 [C] 3.48 1A:2495 [C] 42.35
1Q:123 [HIS] 1A:2496 [G] 2.82 1A:2478 [C] base:BB 42.35
1Q:123 [HIS] 1A:2497 [G] 3.72 1A:2477 [C] 42.35
1Q:124 [LYS] 1A:2479 [C] 2.98 1A:2495 [C] base:SC 91.41
1Q:124 [LYS] 1A:2494 [G] 2.97 1A:2480 [G] 91.41
1Q:124 [LYS] 1A:2495 [C] 2.82 1A:2479 [C] base:SC 91.41
1Q:124 [LYS] 1A:2496 [G] 2.43 1A:2478 [C] sugar:BB 91.41
1Q:124 [LYS] 1A:2497 [G] 3.36 1A:2477 [C] 91.41
1Q:125 [LEU] 1A:2496 [G] 4.61 1A:2478 [C] 83.94
1Q:125 [LEU] 1A:2497 [G] 3.36 1A:2477 [C] 83.94
1Q:126 [PRO] 1A:2497 [G] 3.29 1A:2477 [C] 80.81
1Q:126 [PRO] 1A:2498 [G] 3.55 1A:2476 [C] 80.81
1Q:127 [ILE] 1A:1076 [G] 4.79 1A:1170 [C] 73.56
1Q:128 [LYS] 1A:1074 [A] 4.69 1A:1172 [A] 69.03
1Q:128 [LYS] 1A:1075 [A] 2.43 1A:1171 [G] 69.03
1Q:128 [LYS] 1A:1076 [G] 2.91 1A:1170 [C] 69.03
1Q:130 [LYS] 1A:1164 [C] 4.72 1A:1083 [G] 62.47
1Q:141 [GLN] 1A:952 [G] 4.56 1A:918 [U] 67.06

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 4Y4O_1Q_1A 1Q: 50s ribosomal protein l16, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P60489 Ribosomal protein L10e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Q_1A 6AZ3_N_1 0.52 0.69 2.93 0.07 Ribosomal protein L10e compare
4Y4O_1Q_1A 7O7Y_BI_B5 0.68 0.89 2.42 0.12 Ribosomal protein L10e compare
4Y4O_1Q_1A 7OF0_N_A 0.56 0.93 2.96 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 6AZ3_N_2 0.77 0.79 2.36 0.16 Ribosomal protein L10e compare
1VQ8_H_0 4Y4O_1Q_1A 0.66 0.92 2.06 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4Y4O_1Q_1A 0.66 0.92 2.12 0.18 Ribosomal protein L10e compare
1JJ2_H_0 4Y4O_1Q_1A 0.64 0.92 2.15 0.2 Ribosomal protein L10e compare
4Y4O_1Q_1A 7K00_l_a 0.85 0.97 0.85 0.55 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7N1P_LP_23 0.84 0.97 0.77 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7RYG_L_A 0.80 0.96 2.45 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 4YBB_DN_DA 0.82 0.97 0.96 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7PJS_M_A 0.84 0.97 0.9 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 6S0Z_K_A 0.83 0.97 1.53 0.64 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare