RNAprotDB

All interfaces > All interologs > Interface groups > group138 > 4Y4O_1Q_1A vs 7OF0_N_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1Q
4Y4O_1A
7OF0_N
7OF0_A
Conserved?
1Q:125 [LEU] 1A:2496 [G] N:183 [LEU] A:2971 [A] ✔
1Q:125 [LEU] 1A:2497 [G] N:183 [LEU] A:2972 [A] ✔
1Q:56 [ARG] 1A:2481 [A] N:111 [ARG] A:2956 [A] ✔
1Q:49 [ALA] 1A:2495 [C] N:104 [MET] A:2970 [C] ✔
1Q:49 [ALA] 1A:2496 [G] N:104 [MET] A:2971 [A] ✔
1Q:41 [TRP] 1A:1003 [U] N:96 [TYR] A:2111 [C] ✔
1Q:124 [LYS] 1A:2479 [C] N:182 [LYS] A:2954 [C] ✔
1Q:124 [LYS] 1A:2494 [G] N:182 [LYS] A:2969 [A] ✔
1Q:124 [LYS] 1A:2495 [C] N:182 [LYS] A:2970 [C] ✔
1Q:124 [LYS] 1A:2496 [G] N:182 [LYS] A:2971 [A] ✔
1Q:124 [LYS] 1A:2497 [G] N:182 [LYS] A:2972 [A] ✔
1Q:18 [LYS] 1A:998 [A] N:73 [ARG] A:2105 [G] ✔
1Q:74 [TYR] 1A:1002 [A] N:131 [ILE] A:2110 [A] ✔
1Q:45 [GLN] 1A:2495 [C] N:100 [GLY] A:2970 [C] ✔
1Q:45 [GLN] 1A:2496 [G] N:100 [GLY] A:2971 [A] ✔
1Q:40 [ALA] 1A:1003 [U] N:95 [GLY] A:2111 [C] ✔
1Q:126 [PRO] 1A:2497 [G] N:184 [PRO] A:2972 [A] ✔
1Q:126 [PRO] 1A:2498 [G] N:184 [PRO] A:2973 [U] ✔
1Q:120 [ILE] 1A:2479 [C] N:178 [GLN] A:2954 [C] ✔
1Q:46 [GLN] 1A:2496 [G] N:101 [HIS] A:2971 [A] ✔
1Q:46 [GLN] 1A:2497 [G] N:101 [HIS] A:2972 [A] ✔
1Q:123 [HIS] 1A:2497 [G] N:181 [HIS] A:2972 [A] ✔
1Q:52 [VAL] 1A:2494 [G] N:107 [LEU] A:2969 [A] ❌ 7OF0_N_A
1Q:16 [ARG] 1A:996 [C] N:71 [ASP] A:2103 [A] ❌ 7OF0_N_A
1Q:16 [ARG] 1A:997 [G] N:71 [ASP] A:2104 [A] ❌ 7OF0_N_A
1Q:16 [ARG] 1A:998 [A] N:71 [ASP] A:2105 [G] ❌ 7OF0_N_A
1Q:56 [ARG] 1A:2494 [G] N:111 [ARG] A:2969 [A] ❌ 7OF0_N_A
1Q:43 [THR] 1A:2497 [G] N:98 [HIS] A:2972 [A] ❌ 7OF0_N_A
1Q:74 [TYR] 1A:1003 [U] N:131 [ILE] A:2111 [C] ❌ 7OF0_N_A
1Q:120 [ILE] 1A:2480 [G] N:178 [GLN] A:2955 [U] ❌ 7OF0_N_A
1Q:120 [ILE] 1A:2481 [A] N:178 [GLN] A:2956 [A] ❌ 7OF0_N_A
1Q:123 [HIS] 1A:2479 [C] N:181 [HIS] A:2954 [C] ❌ 7OF0_N_A
1Q:123 [HIS] 1A:2496 [G] N:181 [HIS] A:2971 [A] ❌ 7OF0_N_A
1Q:49 [ALA] 1A:2494 [G] N:104 [MET] A:2969 [A] ❌ 4Y4O_1Q_1A
1Q:52 [VAL] 1A:2481 [A] N:107 [LEU] A:2956 [A] ❌ 4Y4O_1Q_1A
1Q:56 [ARG] 1A:2480 [G] N:111 [ARG] A:2955 [U] ❌ 4Y4O_1Q_1A
1Q:74 [TYR] 1A:2471 [A] N:131 [ILE] A:2946 [A] ❌ 4Y4O_1Q_1A
1Q:18 [LYS] 1A:997 [G] N:73 [ARG] A:2104 [A] ❌ 4Y4O_1Q_1A
1Q:43 [THR] 1A:2471 [A] N:98 [HIS] A:2946 [A] ❌ 4Y4O_1Q_1A
1Q:9 [TYR] 1A:2290 [A] N:63 [ARG] A:2842 [C] ❌ 7OF0_A:2842 no longer at interface
1Q:60 [ARG] 1A:1121 [C] N:115 [PRO] A:2185 [G] ❌ 7OF0_N:115, 7OF0_A:2185 no longer at interface
1Q:60 [ARG] 1A:1122 [C] N:115 [PRO] A:2186 [C] ❌ 7OF0_N:115, 7OF0_A:2186 no longer at interface
1Q:56 [ARG] 1A:2482 [G] N:111 [ARG] A:2957 [G] ❌ 7OF0_A:2957 no longer at interface
1Q:59 [ARG] 1A:1121 [C] N:114 [ASP] A:2185 [G] ❌ 7OF0_N:114, 7OF0_A:2185 no longer at interface
1Q:59 [ARG] 1A:2482 [G] N:114 [ASP] A:2957 [G] ❌ 7OF0_N:114, 7OF0_A:2957 no longer at interface
1Q:61 [GLY] 1A:1122 [C] N:116 [LYS] A:2186 [C] ❌ 7OF0_N:116, 7OF0_A:2186 no longer at interface
1Q:15 [GLY] 1A:999 [G] N:70 [SER] A:2106 [A] ❌ 7OF0_N:70, 7OF0_A:2106 no longer at interface
1Q:123 [HIS] 1A:2478 [C] N:181 [HIS] A:2953 [U] ❌ 7OF0_A:2953 no longer at interface
1Q:17 [LEU] 1A:1003 [U] N:72 [ILE] A:2111 [C] ❌ 7OF0_N:72 no longer at interface
1Q:48 [GLU] 1A:2495 [C] N:103 [GLU] A:2970 [C] ❌ 7OF0_N:103 no longer at interface
1Q:15 [GLY] 1A:998 [A] N:70 [SER] A:2105 [G] ❌ 7OF0_N:70 no longer at interface
1Q:119 [ARG] 1A:2479 [C] N:177 [ASP] A:2954 [C] ❌ 7OF0_N:177 no longer at interface
1Q:119 [ARG] 1A:2480 [G] N:177 [ASP] A:2955 [U] ❌ 7OF0_N:177 no longer at interface
1Q:72 [LYS] 1A:1002 [A] N:129 [LYS] A:2110 [A] ❌ 4Y4O_1Q:72 no longer at interface
1Q:72 [LYS] 1A:1003 [U] N:129 [LYS] A:2111 [C] ❌ 4Y4O_1Q:72 no longer at interface
1Q:73 [PRO] 1A:1002 [A] N:130 [PRO] A:2110 [A] ❌ 4Y4O_1Q:73 no longer at interface
1Q:92 [GLY] 1A:2472 [U] N:149 [HIS] A:2947 [U] ❌ 4Y4O_1Q:92 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e Bacterial large subunit ribosomal RNA 0.93 2.96 0.15 0.7 0.97 0.61 0.65 0.56 0.47 0.20 0.51


Other pairs involving 4Y4O_1Q_1A or 7OF0_N_A

Total number of entries: 16

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_H_0 4Y4O_1Q_1A 0.66 0.92 2.06 0.18 Ribosomal protein L10e compare
1YHQ_H_0 4Y4O_1Q_1A 0.66 0.92 2.12 0.18 Ribosomal protein L10e compare
1JJ2_H_0 4Y4O_1Q_1A 0.64 0.92 2.15 0.2 Ribosomal protein L10e compare
4Y4O_1Q_1A 4YBB_DN_DA 0.82 0.97 0.96 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 6AZ3_N_1 0.52 0.69 2.93 0.07 Ribosomal protein L10e compare
4Y4O_1Q_1A 6AZ3_N_2 0.77 0.79 2.36 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 6S0Z_K_A 0.83 0.97 1.53 0.64 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7K00_l_a 0.85 0.97 0.85 0.55 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7N1P_LP_23 0.84 0.97 0.77 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7O7Y_BI_B5 0.68 0.89 2.42 0.12 Ribosomal protein L10e compare
4Y4O_1Q_1A 7OF0_N_A 0.56 0.93 2.96 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
6S0Z_K_A 7OF0_N_A 0.67 0.92 3.4 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7OF0_N_A 0.57 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7PJS_M_A 0.84 0.97 0.9 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
7OF0_N_A 7PJS_M_A 0.63 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 7RYG_L_A 0.80 0.96 2.45 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare