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All interfaces > All interologs > Interface groups > group138 > 4YBB_DN_DA vs 6AZ3_N_1

Interface analysis


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Common contacts -

4YBB_DN
4YBB_DA
6AZ3_N
6AZ3_1
Conserved?
DN:66 [ARG] DA:906 [U] N:90 [ARG] 1:1094 [C] ✔
DN:66 [ARG] DA:907 [G] N:90 [ARG] 1:1095 [U] ✔
DN:7 [THR] DA:869 [G] N:20 [SER] 1:1056 [G] ✔
DN:85 [GLY] DA:956 [G] N:118 [ALA] 1:1184 [G] ✔
DN:68 [PHE] DA:871 [U] N:92 [HIS] 1:1058 [U] ✔
DN:68 [PHE] DA:872 [U] N:92 [HIS] 1:1059 [U] ✔
DN:68 [PHE] DA:907 [G] N:92 [HIS] 1:1095 [U] ✔
DN:8 [LYS] DA:911 [A] N:21 [ARG] 1:1099 [A] ✔
DN:8 [LYS] DA:912 [C] N:21 [ARG] 1:1100 [C] ✔
DN:86 [LYS] DA:955 [PSU] N:119 [PHE] 1:1183 [G] ✔
DN:86 [LYS] DA:956 [G] N:119 [PHE] 1:1184 [G] ✔
DN:75 [GLU] DA:957 [C] N:99 [ILE] 1:1185 [U] ✔
DN:87 [GLY] DA:955 [PSU] N:120 [GLY] 1:1183 [G] ✔
DN:87 [GLY] DA:956 [G] N:120 [GLY] 1:1184 [G] ✔
DN:64 [TRP] DA:873 [C] N:88 [ARG] 1:1060 [A] ✔
DN:9 [PHE] DA:911 [A] N:22 [PHE] 1:1099 [A] ✔
DN:9 [PHE] DA:912 [C] N:22 [PHE] 1:1100 [C] ✔
DN:100 [LYS] DA:907 [G] N:133 [GLN] 1:1095 [U] ✔
DN:100 [LYS] DA:908 [C] N:133 [GLN] 1:1096 [C] ✔
DN:6 [ARG] DA:869 [G] N:19 [LYS] 1:1056 [G] ✔
DN:6 [ARG] DA:870 [U] N:19 [LYS] 1:1057 [A] ✔
DN:76 [LYS] DA:956 [G] N:100 [ASN] 1:1184 [G] ✔
DN:76 [LYS] DA:957 [C] N:100 [ASN] 1:1185 [U] ✔
DN:74 [THR] DA:956 [G] N:98 [ARG] 1:1184 [G] ✔
DN:74 [THR] DA:957 [C] N:98 [ARG] 1:1185 [U] ✔
DN:97 [GLN] DA:908 [C] N:130 [ARG] 1:1096 [C] ✔
DN:70 [ASP] DA:870 [U] N:94 [PHE] 1:1057 [A] ✔
DN:70 [ASP] DA:907 [G] N:94 [PHE] 1:1095 [U] ✔
DN:70 [ASP] DA:908 [C] N:94 [PHE] 1:1096 [C] ✔
DN:7 [THR] DA:870 [U] N:20 [SER] 1:1057 [A] ❌ 6AZ3_N_1
DN:68 [PHE] DA:870 [U] N:92 [HIS] 1:1057 [A] ❌ 6AZ3_N_1
DN:8 [LYS] DA:869 [G] N:21 [ARG] 1:1056 [G] ❌ 6AZ3_N_1
DN:8 [LYS] DA:909 [A] N:21 [ARG] 1:1097 [A] ❌ 6AZ3_N_1
DN:64 [TRP] DA:872 [U] N:88 [ARG] 1:1059 [U] ❌ 6AZ3_N_1
DN:65 [ILE] DA:872 [U] N:89 [THR] 1:1059 [U] ❌ 6AZ3_N_1
DN:6 [ARG] DA:871 [U] N:19 [LYS] 1:1058 [U] ❌ 6AZ3_N_1
DN:5 [LYS] DA:870 [U] N:18 [PRO] 1:1057 [A] ❌ 6AZ3_N_1
DN:5 [LYS] DA:871 [U] N:18 [PRO] 1:1058 [U] ❌ 6AZ3_N_1
DN:5 [LYS] DA:872 [U] N:18 [PRO] 1:1059 [U] ❌ 6AZ3_N_1
DN:81 [4D4] DA:956 [G] N:114 [GLY] 1:1184 [G] ❌ 4YBB_DN_DA
DN:81 [4D4] DA:959 [A] N:114 [GLY] 1:1186 [A] ❌ 4YBB_DN_DA
DN:81 [4D4] DA:960 [A] N:114 [GLY] 1:1187 [A] ❌ 4YBB_DN_DA
DN:81 [4D4] DA:955 [PSU] N:114 [GLY] 1:1183 [G] ❌ 4YBB_DN_DA
DN:85 [GLY] DA:955 [PSU] N:118 [ALA] 1:1183 [G] ❌ 4YBB_DN_DA
DN:86 [LYS] DA:910 [A] N:119 [PHE] 1:1098 [A] ❌ 4YBB_DN_DA
DN:122 [ALA] DA:1030 [C] N:157 [MET] 1:1267 [G] ❌ 4YBB_DN_DA
DN:5 [LYS] DA:909 [A] N:18 [PRO] 1:1097 [A] ❌ 4YBB_DN_DA
DN:7 [THR] DA:911 [A] N:20 [SER] 1:1099 [A] ❌ 4YBB_DN_DA
DN:64 [TRP] DA:905 [A] N:88 [ARG] 1:1093 [U] ❌ 4YBB_DN_DA
DN:64 [TRP] DA:906 [U] N:88 [ARG] 1:1094 [C] ❌ 4YBB_DN_DA
DN:65 [ILE] DA:906 [U] N:89 [THR] 1:1094 [C] ❌ 4YBB_DN_DA
DN:68 [PHE] DA:906 [U] N:92 [HIS] 1:1094 [C] ❌ 4YBB_DN_DA
DN:70 [ASP] DA:871 [U] N:94 [PHE] 1:1058 [U] ❌ 4YBB_DN_DA
DN:74 [THR] DA:955 [PSU] N:98 [ARG] 1:1183 [G] ❌ 4YBB_DN_DA
DN:8 [LYS] DA:868 [U] N:21 [ARG] 1:1055 [U] ❌ 6AZ3_1:1055 no longer at interface
DN:82 [MET] DA:962 [G] N:115 [MET] 1:1189 [C] ❌ 6AZ3_N:115, 6AZ3_1:1189 no longer at interface
DN:122 [ALA] DA:1031 [G] N:157 [MET] 1:1268 [G] ❌ 4YBB_DA:1031 no longer at interface
DN:11 [LYS] DA:910 [A] N:24 [ARG] 1:1098 [A] ❌ 6AZ3_N:24 no longer at interface
DN:11 [LYS] DA:911 [A] N:24 [ARG] 1:1099 [A] ❌ 6AZ3_N:24 no longer at interface
DN:82 [MET] DA:956 [G] N:115 [MET] 1:1184 [G] ❌ 6AZ3_N:115 no longer at interface
DN:82 [MET] DA:959 [A] N:115 [MET] 1:1186 [A] ❌ 6AZ3_N:115 no longer at interface
DN:82 [MET] DA:960 [A] N:115 [MET] 1:1187 [A] ❌ 6AZ3_N:115 no longer at interface
DN:83 [GLY] DA:955 [PSU] N:116 [ARG] 1:1183 [G] ❌ 6AZ3_N:116 no longer at interface
DN:62 [LYS] DA:873 [C] N:86 [HIS] 1:1060 [A] ❌ 6AZ3_N:86 no longer at interface
DN:62 [LYS] DA:874 [G] N:86 [HIS] 1:1061 [G] ❌ 6AZ3_N:86 no longer at interface
DN:127 [LYS] DA:1028 [A] N:162 [ARG] 1:1265 [A] ❌ 6AZ3_N:162 no longer at interface
DN:127 [LYS] DA:1029 [A] N:162 [ARG] 1:1266 [A] ❌ 6AZ3_N:162 no longer at interface
DN:127 [LYS] DA:1030 [C] N:162 [ARG] 1:1267 [G] ❌ 6AZ3_N:162 no longer at interface
DN:28 [PHE] DA:872 [U] N:43 [VAL] 1:1059 [U] ❌ 6AZ3_N:43 no longer at interface
DN:28 [PHE] DA:873 [C] N:43 [VAL] 1:1060 [A] ❌ 6AZ3_N:43 no longer at interface
DN:28 [PHE] DA:905 [A] N:43 [VAL] 1:1093 [U] ❌ 6AZ3_N:43 no longer at interface
DN:28 [PHE] DA:906 [U] N:43 [VAL] 1:1094 [C] ❌ 6AZ3_N:43 no longer at interface
DN:95 [LEU] DA:908 [C] N:128 [ARG] 1:1096 [C] ❌ 4YBB_DN:95 no longer at interface
DN:126 [ILE] DA:1030 [C] N:161 [GLY] 1:1267 [G] ❌ 4YBB_DN:126 no longer at interface
DN:126 [ILE] DA:1029 [A] N:161 [GLY] 1:1266 [A] ❌ 4YBB_DN:126 no longer at interface
DN:67 [VAL] DA:907 [G] N:91 [ALA] 1:1095 [U] ❌ 4YBB_DN:67 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 0.69 3.25 0.07 0.73 0.7 0.49 0.86 0.55 0.31 0.14 0.47


Other pairs involving 4YBB_DN_DA or 6AZ3_N_1

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Q_1A 4YBB_DN_DA 0.82 0.97 0.96 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4Y4O_1Q_1A 6AZ3_N_1 0.52 0.69 2.93 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 7RYG_L_A 0.92 0.99 2.02 0.84 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7N1P_LP_23 0.98 0.99 0.58 1.0 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6AZ3_N_2 0.74 0.8 2.18 0.16 Ribosomal protein L10e compare
4YBB_DN_DA 7OF0_N_A 0.57 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6S0Z_K_A 0.83 0.96 1.48 0.5 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7O7Y_BI_B5 0.72 0.88 2.4 0.14 Ribosomal protein L10e compare
4YBB_DN_DA 6AZ3_N_1 0.55 0.69 3.25 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 7PJS_M_A 0.98 0.99 0.89 0.93 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7K00_l_a 0.97 1.0 0.27 0.96 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
1VQ8_H_0 6AZ3_N_1 0.65 0.77 1.62 0.24 Ribosomal protein L10e compare
1VQ8_H_0 4YBB_DN_DA 0.62 0.91 2.19 0.16 Ribosomal protein L10e compare
6AZ3_N_1 6S0Z_K_A 0.58 0.7 2.55 0.02 Ribosomal protein L10e compare
6AZ3_N_1 7K00_l_a 0.57 0.69 3.47 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7RYG_L_A 0.50 0.68 2.8 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7PJS_M_A 0.56 0.69 3.41 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7O7Y_BI_B5 0.83 0.92 1.32 0.71 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
6AZ3_N_1 7N1P_LP_23 0.57 0.69 2.45 0.07 Ribosomal protein L10e compare
1YHQ_H_0 4YBB_DN_DA 0.62 0.91 2.28 0.16 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_1 0.62 0.77 1.64 0.34 Ribosomal protein L10e compare
1JJ2_H_0 4YBB_DN_DA 0.62 0.91 2.29 0.18 Ribosomal protein L10e compare