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All interfaces > All interologs > Interface groups > group138 > 4YBB_DN_DA vs 6AZ3_N_2

Interface analysis


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Common contacts -

4YBB_DN
4YBB_DA
6AZ3_N
6AZ3_2
Conserved?
DN:81 [4D4] DA:2250 [G] N:114 [GLY] 2:1046 [G] ✔
DN:81 [4D4] DA:2495 [G] N:114 [GLY] 2:1303 [A] ✔
DN:81 [4D4] DA:2496 [C] N:114 [GLY] 2:1304 [U] ✔
DN:85 [GLY] DA:2276 [G] N:118 [ALA] 2:1073 [G] ✔
DN:42 [THR] DA:2485 [G] N:61 [ALA] 2:1293 [U] ✔
DN:55 [ARG] DA:2469 [A] N:74 [LYS] 2:1277 [A] ✔
DN:86 [LYS] DA:2276 [G] N:119 [PHE] 2:1073 [G] ✔
DN:86 [LYS] DA:2277 [G] N:119 [PHE] 2:1074 [C] ✔
DN:48 [ALA] DA:2483 [C] N:67 [ALA] 2:1291 [C] ✔
DN:48 [ALA] DA:2484 [G] N:67 [ALA] 2:1292 [G] ✔
DN:119 [LEU] DA:2467 [C] N:154 [ARG] 2:1275 [C] ✔
DN:119 [LEU] DA:2468 [A] N:154 [ARG] 2:1276 [A] ✔
DN:84 [LYS] DA:2250 [G] N:117 [GLY] 2:1046 [G] ✔
DN:84 [LYS] DA:2275 [C] N:117 [GLY] 2:1072 [C] ✔
DN:84 [LYS] DA:2276 [G] N:117 [GLY] 2:1073 [G] ✔
DN:82 [MET] DA:2250 [G] N:115 [MET] 2:1046 [G] ✔
DN:82 [MET] DA:2495 [G] N:115 [MET] 2:1303 [A] ✔
DN:82 [MET] DA:2496 [C] N:115 [MET] 2:1304 [U] ✔
DN:83 [GLY] DA:2250 [G] N:116 [ARG] 2:1046 [G] ✔
DN:83 [GLY] DA:2275 [C] N:116 [ARG] 2:1072 [C] ✔
DN:45 [GLN] DA:2484 [G] N:64 [ALA] 2:1292 [G] ✔
DN:45 [GLN] DA:2485 [G] N:64 [ALA] 2:1293 [U] ✔
DN:9 [PHE] DA:2278 [A] N:22 [PHE] 2:1075 [A] ✔
DN:124 [LEU] DA:2484 [G] N:159 [PHE] 2:1292 [G] ✔
DN:124 [LEU] DA:2485 [G] N:159 [PHE] 2:1293 [U] ✔
DN:123 [LYS] DA:2467 [C] N:158 [LYS] 2:1275 [C] ✔
DN:123 [LYS] DA:2482 [A] N:158 [LYS] 2:1290 [A] ✔
DN:123 [LYS] DA:2483 [C] N:158 [LYS] 2:1291 [C] ✔
DN:123 [LYS] DA:2484 [G] N:158 [LYS] 2:1292 [G] ✔
DN:123 [LYS] DA:2485 [G] N:158 [LYS] 2:1293 [U] ✔
DN:125 [PRO] DA:2485 [G] N:160 [PRO] 2:1293 [U] ✔
DN:125 [PRO] DA:2486 [C] N:160 [PRO] 2:1294 [C] ✔
DN:44 [ARG] DA:2483 [C] N:63 [GLU] 2:1291 [C] ✔
DN:44 [ARG] DA:2484 [G] N:63 [GLU] 2:1292 [G] ✔
DN:122 [ALA] DA:2466 [C] N:157 [MET] 2:1274 [C] ✔
DN:122 [ALA] DA:2467 [C] N:157 [MET] 2:1275 [C] ✔
DN:122 [ALA] DA:2484 [G] N:157 [MET] 2:1292 [G] ✔
DN:122 [ALA] DA:2485 [G] N:157 [MET] 2:1293 [U] ✔
DN:81 [4D4] DA:2251 [OMG] N:114 [GLY] 2:1047 [OMG] ❌ 6AZ3_N_2
DN:81 [4D4] DA:2252 [G] N:114 [GLY] 2:1048 [G] ❌ 6AZ3_N_2
DN:85 [GLY] DA:2275 [C] N:118 [ALA] 2:1072 [C] ❌ 6AZ3_N_2
DN:85 [GLY] DA:2277 [G] N:118 [ALA] 2:1074 [C] ❌ 6AZ3_N_2
DN:55 [ARG] DA:2470 [G] N:74 [LYS] 2:1278 [G] ❌ 6AZ3_N_2
DN:84 [LYS] DA:2249 [U] N:117 [GLY] 2:1045 [U] ❌ 6AZ3_N_2
DN:84 [LYS] DA:2255 [G] N:117 [GLY] 2:1051 [G] ❌ 6AZ3_N_2
DN:83 [GLY] DA:2276 [G] N:116 [ARG] 2:1073 [G] ❌ 6AZ3_N_2
DN:82 [MET] DA:2276 [G] N:115 [MET] 2:1073 [G] ❌ 4YBB_DN_DA
DN:83 [GLY] DA:2255 [G] N:116 [ARG] 2:1051 [G] ❌ 4YBB_DN_DA
DN:83 [GLY] DA:2249 [U] N:116 [ARG] 2:1045 [U] ❌ 4YBB_DN_DA
DN:83 [GLY] DA:2252 [G] N:116 [ARG] 2:1048 [G] ❌ 4YBB_DN_DA
DN:83 [GLY] DA:2496 [C] N:116 [ARG] 2:1304 [U] ❌ 4YBB_DN_DA
DN:83 [GLY] DA:2251 [OMG] N:116 [ARG] 2:1047 [OMG] ❌ 4YBB_DN_DA
DN:86 [LYS] DA:2278 [A] N:119 [PHE] 2:1075 [A] ❌ 4YBB_DN_DA
DN:119 [LEU] DA:2469 [A] N:154 [ARG] 2:1277 [A] ❌ 4YBB_DN_DA
DN:81 [4D4] DA:2253 [G] N:114 [GLY] 2:1049 [G] ❌ 6AZ3_2:1049 no longer at interface
DN:83 [GLY] DA:2254 [C] N:116 [ARG] 2:1050 [C] ❌ 4YBB_DA:2254 no longer at interface
DN:8 [LYS] DA:2329 [U] N:21 [ARG] 2:1126 [G] ❌ 4YBB_DA:2329 no longer at interface
DN:8 [LYS] DA:2328 [A] N:21 [ARG] 2:1125 [A] ❌ 4YBB_DA:2328 no longer at interface
DN:10 [ARG] DA:2277 [G] N:23 [CYS] 2:1074 [C] ❌ 6AZ3_N:23 no longer at interface
DN:10 [ARG] DA:2278 [A] N:23 [CYS] 2:1075 [A] ❌ 6AZ3_N:23 no longer at interface
DN:51 [ARG] DA:2483 [C] N:70 [ILE] 2:1291 [C] ❌ 6AZ3_N:70 no longer at interface
DN:11 [LYS] DA:2277 [G] N:24 [ARG] 2:1074 [C] ❌ 6AZ3_N:24 no longer at interface
DN:11 [LYS] DA:2278 [A] N:24 [ARG] 2:1075 [A] ❌ 6AZ3_N:24 no longer at interface
DN:47 [GLU] DA:2483 [C] N:66 [GLU] 2:1291 [C] ❌ 6AZ3_N:66 no longer at interface
DN:118 [LYS] DA:2467 [C] N:153 [ARG] 2:1275 [C] ❌ 4YBB_DN:118 no longer at interface
DN:118 [LYS] DA:2468 [A] N:153 [ARG] 2:1276 [A] ❌ 4YBB_DN:118 no longer at interface
DN:52 [ALA] DA:2469 [A] N:71 [GLN] 2:1277 [A] ❌ 4YBB_DN:52 no longer at interface
DN:52 [ALA] DA:2468 [A] N:71 [GLN] 2:1276 [A] ❌ 4YBB_DN:52 no longer at interface
DN:56 [ALA] DA:2469 [A] N:75 [TYR] 2:1277 [A] ❌ 4YBB_DN:56 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 0.8 2.18 0.16 0.73 0.83 0.58 0.77 0.74 0.82 0.17 0.48


Other pairs involving 4YBB_DN_DA or 6AZ3_N_2

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_N_2 6S0Z_K_A 0.77 0.78 2.44 0.13 Ribosomal protein L10e compare
6AZ3_N_2 7RYG_L_A 0.76 0.78 2.39 0.16 Ribosomal protein L10e compare
6AZ3_N_2 7K00_l_a 0.72 0.79 2.53 0.13 Ribosomal protein L10e compare
6AZ3_N_2 7N1P_LP_23 0.76 0.8 2.11 0.16 Ribosomal protein L10e compare
6AZ3_N_2 7O7Y_BI_B5 0.88 0.92 1.34 0.77 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
6AZ3_N_2 7PJS_M_A 0.75 0.8 2.19 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 6AZ3_N_2 0.77 0.79 2.36 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 4YBB_DN_DA 0.82 0.97 0.96 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7RYG_L_A 0.92 0.99 2.02 0.84 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7N1P_LP_23 0.98 0.99 0.58 1.0 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6AZ3_N_2 0.74 0.8 2.18 0.16 Ribosomal protein L10e compare
4YBB_DN_DA 7OF0_N_A 0.57 0.92 3.28 0.15 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6S0Z_K_A 0.83 0.96 1.48 0.5 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7O7Y_BI_B5 0.72 0.88 2.4 0.14 Ribosomal protein L10e compare
4YBB_DN_DA 6AZ3_N_1 0.55 0.69 3.25 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 7PJS_M_A 0.98 0.99 0.89 0.93 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7K00_l_a 0.97 1.0 0.27 0.96 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
1VQ8_H_0 4YBB_DN_DA 0.62 0.91 2.19 0.16 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_2 0.89 0.81 1.6 0.39 Ribosomal protein L10e compare
1YHQ_H_0 4YBB_DN_DA 0.62 0.91 2.28 0.16 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_2 0.87 0.81 1.64 0.35 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_2 0.88 0.81 1.64 0.39 Ribosomal protein L10e compare
1JJ2_H_0 4YBB_DN_DA 0.62 0.91 2.29 0.18 Ribosomal protein L10e compare