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All interfaces > All interologs > Interface groups > group138 > 6AZ3_N_1

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_N
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:4 [ARG] 1:1185 [U] 2.77 base/AA stacks 88.2
N:8 [CYS] 1:1185 [U] 3.33 58.0
N:8 [CYS] 1:1186 [A] 4.78 58.0
N:9 [TYR] 1:1185 [U] 3.81 66.7
N:10 [ARG] 1:1265 [A] 4.88 1:1363 [A] 76.8
N:13 [LYS] 1:1182 [C] 4.3 1:1190 [OMG] 34.8
N:13 [LYS] 1:1184 [G] 3.03 1:1187 [A] 34.8
N:13 [LYS] 1:1186 [A] 2.56 34.8
N:13 [LYS] 1:1187 [A] 4.56 1:1184 [G] 34.8
N:14 [ASN] 1:1182 [C] 4.3 1:1190 [OMG] 40.9
N:14 [ASN] 1:1183 [G] 2.85 1:1189 [C] 40.9
N:14 [ASN] 1:1184 [G] 4.72 1:1187 [A] 40.9
N:15 [LYS] 1:1098 [A] 3.84 60.9
N:15 [LYS] 1:1181 [U] 3.92 1:1191 [G] 60.9
N:15 [LYS] 1:1182 [C] 3.29 1:1190 [OMG] 60.9
N:16 [PRO] 1:1097 [A] 3.62 1:1055 [U] 63.8
N:16 [PRO] 1:1098 [A] 3.77 63.8
N:17 [TYR] 1:1098 [A] 3.33 46.4
N:17 [TYR] 1:1099 [A] 3.79 46.4
N:18 [PRO] 1:1097 [A] 4.28 1:1055 [U] 78.2
N:19 [LYS] 1:1056 [G] 4.81 1:1096 [C] 82.1
N:19 [LYS] 1:1057 [A] 4.64 1:1095 [U] 82.1
N:20 [SER] 1:1056 [G] 4.89 1:1096 [C] 69.4
N:20 [SER] 1:1099 [A] 4.23 69.4
N:21 [ARG] 1:1099 [A] 4.82 68.7
N:21 [ARG] 1:1100 [C] 2.9 1:1050 [G] 68.7
N:22 [PHE] 1:1099 [A] 3.62 base/AA stacks 64.9
N:22 [PHE] 1:1100 [C] 3.91 1:1050 [G] 64.9
N:34 [PHE] 1:1059 [U] 3.32 1:1093 [U] 65.2
N:35 [ASP] 1:1059 [U] 4.37 1:1093 [U] 42.5
N:35 [ASP] 1:1060 [A] 3.1 1:1092 [U] 42.5
N:39 [ARG] 1:1060 [A] 3.68 1:1092 [U] 22.5
N:39 [ARG] 1:1061 [G] 3.09 1:1091 [A] 22.5
N:40 [ARG] 1:1061 [G] 3.41 1:1091 [A] 38.6
N:40 [ARG] 1:1062 [A] 2.25 1:1090 [U] 38.6
N:41 [ALA] 1:1061 [G] 4.49 1:1091 [A] 21.3
N:88 [ARG] 1:1060 [A] 4.72 1:1092 [U] 58.1
N:88 [ARG] 1:1093 [U] 4.15 1:1059 [U] 58.1
N:88 [ARG] 1:1094 [C] 3.67 1:1058 [U] 58.1
N:89 [THR] 1:1094 [C] 4.24 1:1058 [U] 70.6
N:90 [ARG] 1:1094 [C] 3.49 1:1058 [U] 66.3
N:90 [ARG] 1:1095 [U] 3.03 1:1057 [A] 66.3
N:91 [ALA] 1:1095 [U] 4.88 1:1057 [A] 31.8
N:92 [HIS] 1:1058 [U] 3.91 1:1094 [C] 72.7
N:92 [HIS] 1:1059 [U] 4.05 1:1093 [U] 72.7
N:92 [HIS] 1:1094 [C] 3.35 1:1058 [U] 72.7
N:92 [HIS] 1:1095 [U] 3.25 1:1057 [A] sugar:SC 72.7
N:94 [PHE] 1:1057 [A] 4.17 1:1095 [U] 83.6
N:94 [PHE] 1:1058 [U] 3.64 1:1094 [C] 83.6
N:94 [PHE] 1:1095 [U] 3.35 1:1057 [A] 83.6
N:94 [PHE] 1:1096 [C] 3.55 1:1056 [G] 83.6
N:98 [ARG] 1:1183 [G] 3.1 1:1189 [C] 98.1
N:98 [ARG] 1:1184 [G] 3.05 1:1187 [A] 98.1
N:98 [ARG] 1:1185 [U] 3.67 98.1
N:99 [ILE] 1:1185 [U] 3.83 94.7
N:100 [ASN] 1:1184 [G] 3.87 1:1187 [A] 92.8
N:100 [ASN] 1:1185 [U] 3.21 92.8
N:114 [GLY] 1:1183 [G] 4.0 1:1189 [C] 96.0
N:114 [GLY] 1:1184 [G] 3.81 1:1187 [A] 96.0
N:114 [GLY] 1:1186 [A] 3.21 base:BB 96.0
N:114 [GLY] 1:1187 [A] 3.42 1:1184 [G] 96.0
N:118 [ALA] 1:1183 [G] 3.65 1:1189 [C] 78.5
N:118 [ALA] 1:1184 [G] 3.17 1:1187 [A] 78.5
N:119 [PHE] 1:1098 [A] 4.99 81.0
N:119 [PHE] 1:1183 [G] 3.35 1:1189 [C] 81.0
N:119 [PHE] 1:1184 [G] 3.44 1:1187 [A] 81.0
N:120 [GLY] 1:1183 [G] 4.25 1:1189 [C] 90.6
N:120 [GLY] 1:1184 [G] 2.68 1:1187 [A] 90.6
N:128 [ARG] 1:1096 [C] 4.84 1:1056 [G] 77.2
N:130 [ARG] 1:1096 [C] 2.99 1:1056 [G] 11.2
N:133 [GLN] 1:1095 [U] 3.92 1:1057 [A] 67.2
N:133 [GLN] 1:1096 [C] 2.87 1:1056 [G] 67.2
N:157 [MET] 1:1267 [G] 3.89 1:1361 [C] 3.2
N:157 [MET] 1:1268 [G] 4.94 1:1360 [C] 3.2
N:161 [GLY] 1:1266 [A] 4.85 1:1362 [G] 20.3
N:161 [GLY] 1:1267 [G] 4.9 1:1361 [C] 20.3
N:193 [ARG] 1:1061 [G] 4.63 1:1091 [A] 71.7
N:193 [ARG] 1:1062 [A] 4.24 1:1090 [U] 71.7
N:193 [ARG] 1:1091 [A] 3.03 1:1061 [G] 71.7
N:193 [ARG] 1:1092 [U] 3.06 1:1060 [A] sugar:SC 71.7
N:194 [GLY] 1:1061 [G] 3.23 1:1091 [A] 68.1
N:194 [GLY] 1:1062 [A] 3.25 1:1090 [U] 68.1
N:195 [THR] 1:1061 [G] 3.62 1:1091 [A] 28.8
N:196 [HIS] 1:1061 [G] 3.62 1:1091 [A] 40.6
N:196 [HIS] 1:1092 [U] 3.01 1:1060 [A] base:SC 40.6
N:196 [HIS] 1:1093 [U] 3.72 1:1059 [U] 40.6

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 6AZ3_N_1 N: 60s ribosomal protein l10, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3S5H5C4 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Q_1A 6AZ3_N_1 0.52 0.69 2.93 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 6AZ3_N_1 0.55 0.69 3.25 0.07 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_1 0.65 0.77 1.62 0.24 Ribosomal protein L10e compare
6AZ3_N_1 6S0Z_K_A 0.58 0.7 2.55 0.02 Ribosomal protein L10e compare
6AZ3_N_1 7K00_l_a 0.57 0.69 3.47 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7RYG_L_A 0.50 0.68 2.8 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7PJS_M_A 0.56 0.69 3.41 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7O7Y_BI_B5 0.83 0.92 1.32 0.71 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
6AZ3_N_1 7N1P_LP_23 0.57 0.69 2.45 0.07 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_1 0.62 0.77 1.64 0.34 Ribosomal protein L10e compare