RNAprotDB

All interfaces > All interologs > Interface groups > group138 > 6AZ3_N_1 vs 7K00_l_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_N
6AZ3_1
7K00_l
7K00_a
Conserved?
N:88 [ARG] 1:1060 [A] l:64 [TRP] a:873 [C] ✔
N:130 [ARG] 1:1096 [C] l:97 [GLN] a:908 [C] ✔
N:22 [PHE] 1:1099 [A] l:9 [PHE] a:911 [A] ✔
N:22 [PHE] 1:1100 [C] l:9 [PHE] a:912 [C] ✔
N:99 [ILE] 1:1185 [U] l:75 [GLU] a:957 [C] ✔
N:20 [SER] 1:1056 [G] l:7 [THR] a:869 [G] ✔
N:92 [HIS] 1:1058 [U] l:68 [PHE] a:871 [U] ✔
N:92 [HIS] 1:1059 [U] l:68 [PHE] a:872 [U] ✔
N:92 [HIS] 1:1095 [U] l:68 [PHE] a:907 [G] ✔
N:119 [PHE] 1:1183 [G] l:86 [LYS] a:955 [PSU] ✔
N:119 [PHE] 1:1184 [G] l:86 [LYS] a:956 [G] ✔
N:19 [LYS] 1:1057 [A] l:6 [ARG] a:870 [U] ✔
N:118 [ALA] 1:1184 [G] l:85 [GLY] a:956 [G] ✔
N:94 [PHE] 1:1057 [A] l:70 [ASP] a:870 [U] ✔
N:94 [PHE] 1:1095 [U] l:70 [ASP] a:907 [G] ✔
N:94 [PHE] 1:1096 [C] l:70 [ASP] a:908 [C] ✔
N:90 [ARG] 1:1094 [C] l:66 [ARG] a:906 [U] ✔
N:90 [ARG] 1:1095 [U] l:66 [ARG] a:907 [G] ✔
N:21 [ARG] 1:1100 [C] l:8 [LYS] a:912 [C] ✔
N:98 [ARG] 1:1184 [G] l:74 [THR] a:956 [G] ✔
N:98 [ARG] 1:1185 [U] l:74 [THR] a:957 [C] ✔
N:100 [ASN] 1:1184 [G] l:76 [LYS] a:956 [G] ✔
N:100 [ASN] 1:1185 [U] l:76 [LYS] a:957 [C] ✔
N:120 [GLY] 1:1183 [G] l:87 [GLY] a:955 [PSU] ✔
N:120 [GLY] 1:1184 [G] l:87 [GLY] a:956 [G] ✔
N:133 [GLN] 1:1095 [U] l:100 [LYS] a:907 [G] ✔
N:133 [GLN] 1:1096 [C] l:100 [LYS] a:908 [C] ✔
N:114 [GLY] 1:1183 [G] l:80 [VAL] a:955 [PSU] ❌ 7K00_l_a
N:114 [GLY] 1:1184 [G] l:80 [VAL] a:956 [G] ❌ 7K00_l_a
N:88 [ARG] 1:1093 [U] l:64 [TRP] a:905 [A] ❌ 7K00_l_a
N:88 [ARG] 1:1094 [C] l:64 [TRP] a:906 [U] ❌ 7K00_l_a
N:20 [SER] 1:1099 [A] l:7 [THR] a:911 [A] ❌ 7K00_l_a
N:92 [HIS] 1:1094 [C] l:68 [PHE] a:906 [U] ❌ 7K00_l_a
N:119 [PHE] 1:1098 [A] l:86 [LYS] a:910 [A] ❌ 7K00_l_a
N:19 [LYS] 1:1056 [G] l:6 [ARG] a:869 [G] ❌ 7K00_l_a
N:118 [ALA] 1:1183 [G] l:85 [GLY] a:955 [PSU] ❌ 7K00_l_a
N:94 [PHE] 1:1058 [U] l:70 [ASP] a:871 [U] ❌ 7K00_l_a
N:157 [MET] 1:1267 [G] l:122 [ALA] a:1030 [C] ❌ 7K00_l_a
N:18 [PRO] 1:1097 [A] l:5 [LYS] a:909 [A] ❌ 7K00_l_a
N:21 [ARG] 1:1099 [A] l:8 [LYS] a:911 [A] ❌ 7K00_l_a
N:98 [ARG] 1:1183 [G] l:74 [THR] a:955 [PSU] ❌ 7K00_l_a
N:89 [THR] 1:1094 [C] l:65 [ILE] a:906 [U] ❌ 7K00_l_a
N:18 [PRO] 1:1058 [U] l:5 [LYS] a:871 [U] ❌ 6AZ3_N_1
N:18 [PRO] 1:1057 [A] l:5 [LYS] a:870 [U] ❌ 6AZ3_N_1
N:19 [LYS] 1:1058 [U] l:6 [ARG] a:871 [U] ❌ 6AZ3_N_1
N:88 [ARG] 1:1059 [U] l:64 [TRP] a:872 [U] ❌ 6AZ3_N_1
N:89 [THR] 1:1059 [U] l:65 [ILE] a:872 [U] ❌ 6AZ3_N_1
N:92 [HIS] 1:1057 [A] l:68 [PHE] a:870 [U] ❌ 6AZ3_N_1
N:20 [SER] 1:1057 [A] l:7 [THR] a:870 [U] ❌ 6AZ3_N_1
N:21 [ARG] 1:1056 [G] l:8 [LYS] a:869 [G] ❌ 6AZ3_N_1
N:21 [ARG] 1:1097 [A] l:8 [LYS] a:909 [A] ❌ 6AZ3_N_1
N:114 [GLY] 1:1186 [A] l:80 [VAL] a:959 [A] ❌ 7K00_a:959 no longer at interface
N:114 [GLY] 1:1187 [A] l:80 [VAL] a:960 [A] ❌ 7K00_a:960 no longer at interface
N:157 [MET] 1:1268 [G] l:122 [ALA] a:1031 [G] ❌ 7K00_a:1031 no longer at interface
N:21 [ARG] 1:1055 [U] l:8 [LYS] a:868 [U] ❌ 6AZ3_1:1055 no longer at interface
N:128 [ARG] 1:1096 [C] l:95 [LEU] a:908 [C] ❌ 7K00_l:95 no longer at interface
N:91 [ALA] 1:1095 [U] l:67 [VAL] a:907 [G] ❌ 7K00_l:67 no longer at interface
N:161 [GLY] 1:1266 [A] l:126 [ILE] a:1029 [A] ❌ 7K00_l:126 no longer at interface
N:161 [GLY] 1:1267 [G] l:126 [ILE] a:1030 [C] ❌ 7K00_l:126 no longer at interface
N:24 [ARG] 1:1099 [A] l:11 [LYS] a:911 [A] ❌ 6AZ3_N:24 no longer at interface
N:24 [ARG] 1:1098 [A] l:11 [LYS] a:910 [A] ❌ 6AZ3_N:24 no longer at interface
N:162 [ARG] 1:1266 [A] l:127 [LYS] a:1029 [A] ❌ 6AZ3_N:162 no longer at interface
N:162 [ARG] 1:1267 [G] l:127 [LYS] a:1030 [C] ❌ 6AZ3_N:162 no longer at interface
N:43 [VAL] 1:1093 [U] l:28 [PHE] a:905 [A] ❌ 6AZ3_N:43 no longer at interface
N:43 [VAL] 1:1060 [A] l:28 [PHE] a:873 [C] ❌ 6AZ3_N:43 no longer at interface
N:43 [VAL] 1:1094 [C] l:28 [PHE] a:906 [U] ❌ 6AZ3_N:43 no longer at interface
N:43 [VAL] 1:1059 [U] l:28 [PHE] a:872 [U] ❌ 6AZ3_N:43 no longer at interface
N:86 [HIS] 1:1060 [A] l:62 [LYS] a:873 [C] ❌ 6AZ3_N:86 no longer at interface
N:86 [HIS] 1:1061 [G] l:62 [LYS] a:874 [G] ❌ 6AZ3_N:86 no longer at interface
N:116 [ARG] 1:1183 [G] l:83 [GLY] a:955 [PSU] ❌ 6AZ3_N:116 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 0.69 3.47 0.07 0.74 0.7 0.49 0.75 0.57 0.33 0.15 0.44


Other pairs involving 6AZ3_N_1 or 7K00_l_a

Total number of entries: 18

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_N_2 7K00_l_a 0.72 0.79 2.53 0.13 Ribosomal protein L10e compare
4Y4O_1Q_1A 6AZ3_N_1 0.52 0.69 2.93 0.07 Ribosomal protein L10e compare
4Y4O_1Q_1A 7K00_l_a 0.85 0.97 0.85 0.55 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
6S0Z_K_A 7K00_l_a 0.81 0.97 1.4 0.48 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 6AZ3_N_1 0.55 0.69 3.25 0.07 Ribosomal protein L10e compare
4YBB_DN_DA 7K00_l_a 0.97 1.0 0.27 0.96 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
1VQ8_H_0 7K00_l_a 0.62 0.9 2.5 0.14 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_1 0.65 0.77 1.62 0.24 Ribosomal protein L10e compare
6AZ3_N_1 6S0Z_K_A 0.58 0.7 2.55 0.02 Ribosomal protein L10e compare
6AZ3_N_1 7K00_l_a 0.57 0.69 3.47 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7RYG_L_A 0.50 0.68 2.8 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7PJS_M_A 0.56 0.69 3.41 0.07 Ribosomal protein L10e compare
6AZ3_N_1 7O7Y_BI_B5 0.83 0.92 1.32 0.71 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
6AZ3_N_1 7N1P_LP_23 0.57 0.69 2.45 0.07 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_1 0.65 0.77 1.64 0.24 Ribosomal protein L10e compare
1YHQ_H_0 7K00_l_a 0.63 0.9 2.63 0.14 Ribosomal protein L10e compare
1JJ2_H_0 7K00_l_a 0.61 0.9 2.65 0.16 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_1 0.62 0.77 1.64 0.34 Ribosomal protein L10e compare