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All interfaces > All interologs > Interface groups > group138 > 6AZ3_N_2

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Contacts -

6AZ3_N
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
N:2 [ALA] 2:1268 [U] 4.53 2:1300 [U] 44.19
N:3 [ARG] 2:1268 [U] 4.02 2:1300 [U] 62.82
N:4 [ARG] 2:1267 [G] 2.44 2:1301 [U] sugar:SC, sugar:SC 88.25
N:4 [ARG] 2:1268 [U] 3.77 2:1300 [U] 88.25
N:5 [PRO] 2:1267 [G] 4.44 2:1301 [U] 76.65
N:5 [PRO] 2:1268 [U] 3.43 2:1300 [U] 76.65
N:6 [SER] 2:1293 [U] 3.73 2:1273 [G] 54.41
N:6 [SER] 2:1294 [C] 3.7 2:1272 [G] 54.41
N:7 [ARG] 2:1267 [G] 3.33 2:1301 [U] 56.06
N:7 [ARG] 2:1294 [C] 4.18 2:1272 [G] 56.06
N:7 [ARG] 2:1295 [G] 3.0 2:1271 [C] base:SC 56.06
N:7 [ARG] 2:1296 [C] 3.3 2:1270 [G] base:SC 56.06
N:7 [ARG] 2:1297 [U] 4.98 2:1269 [G] 56.06
N:8 [CYS] 2:1267 [G] 3.62 2:1301 [U] 58.06
N:10 [ARG] 2:1294 [C] 3.57 2:1272 [G] 76.85
N:10 [ARG] 2:1295 [G] 2.86 2:1271 [C] 76.85
N:15 [LYS] 2:1062 [U] 3.06 2:1071 [A] 60.98
N:15 [LYS] 2:1063 [A] 2.45 2:1070 [A] 60.98
N:21 [ARG] 2:1125 [A] 4.99 68.73
N:21 [ARG] 2:1126 [G] 4.13 2:1185 [C] 68.73
N:22 [PHE] 2:1075 [A] 3.21 2:1059 [U] 64.94
N:61 [ALA] 2:1293 [U] 4.11 2:1273 [G] 92.28
N:63 [GLU] 2:1291 [C] 4.45 2:1275 [C] 68.65
N:63 [GLU] 2:1292 [G] 3.48 2:1274 [C] 68.65
N:64 [ALA] 2:1292 [G] 3.52 2:1274 [C] 91.23
N:64 [ALA] 2:1293 [U] 3.5 2:1273 [G] 91.23
N:67 [ALA] 2:1291 [C] 3.56 2:1275 [C] 90.6
N:67 [ALA] 2:1292 [G] 3.43 2:1274 [C] 90.6
N:71 [GLN] 2:1276 [A] 4.99 2:1290 [A] 69.55
N:71 [GLN] 2:1277 [A] 3.16 69.55
N:74 [LYS] 2:1277 [A] 4.59 69.87
N:75 [TYR] 2:1277 [A] 4.82 17.42
N:78 [LYS] 2:1277 [A] 3.72 60.91
N:78 [LYS] 2:1278 [G] 4.57 2:1288 [C] 60.91
N:114 [GLY] 2:1046 [G] 3.93 96.0
N:114 [GLY] 2:1303 [A] 2.96 2:1264 [C] 96.0
N:114 [GLY] 2:1304 [U] 3.28 2:1263 [G] 96.0
N:115 [MET] 2:1046 [G] 3.33 98.49
N:115 [MET] 2:1073 [G] 4.5 2:1061 [U] 98.49
N:115 [MET] 2:1303 [A] 3.67 2:1264 [C] 98.49
N:115 [MET] 2:1304 [U] 3.3 2:1263 [G] 98.49
N:116 [ARG] 2:1045 [U] 3.01 sugar:SC 76.92
N:116 [ARG] 2:1046 [G] 3.16 76.92
N:116 [ARG] 2:1047 [OMG] 4.62 76.92
N:116 [ARG] 2:1048 [G] 4.56 76.92
N:116 [ARG] 2:1050 [C] 3.03 base:SC 76.92
N:116 [ARG] 2:1051 [G] 3.59 2:1072 [C] 76.92
N:116 [ARG] 2:1072 [C] 3.38 2:1051 [G] base/AA stacks 76.92
N:116 [ARG] 2:1304 [U] 4.99 2:1263 [G] 76.92
N:117 [GLY] 2:1046 [G] 4.37 17.88
N:117 [GLY] 2:1072 [C] 3.06 2:1051 [G] 17.88
N:117 [GLY] 2:1073 [G] 3.95 2:1061 [U] 17.88
N:118 [ALA] 2:1073 [G] 3.93 2:1061 [U] 78.56
N:119 [PHE] 2:1073 [G] 3.99 2:1061 [U] 81.02
N:119 [PHE] 2:1074 [C] 3.53 2:1060 [G] 81.02
N:119 [PHE] 2:1075 [A] 4.98 2:1059 [U] 81.02
N:153 [ARG] 2:1275 [C] 3.77 2:1291 [C] 51.26
N:153 [ARG] 2:1276 [A] 3.72 2:1290 [A] 51.26
N:154 [ARG] 2:1275 [C] 3.96 2:1291 [C] sugar:BB 65.84
N:154 [ARG] 2:1276 [A] 3.64 2:1290 [A] 65.84
N:154 [ARG] 2:1277 [A] 2.57 65.84
N:157 [MET] 2:1274 [C] 4.11 2:1292 [G] 3.26
N:157 [MET] 2:1275 [C] 3.8 2:1291 [C] 3.26
N:157 [MET] 2:1292 [G] 3.14 2:1274 [C] base:BB 3.26
N:157 [MET] 2:1293 [U] 4.35 2:1273 [G] 3.26
N:158 [LYS] 2:1275 [C] 2.58 2:1291 [C] base:SC 99.0
N:158 [LYS] 2:1290 [A] 4.97 2:1276 [A] 99.0
N:158 [LYS] 2:1291 [C] 3.28 2:1275 [C] 99.0
N:158 [LYS] 2:1292 [G] 2.57 2:1274 [C] sugar:BB 99.0
N:158 [LYS] 2:1293 [U] 3.64 2:1273 [G] 99.0
N:159 [PHE] 2:1292 [G] 4.64 2:1274 [C] 54.7
N:159 [PHE] 2:1293 [U] 4.35 2:1273 [G] 54.7
N:160 [PRO] 2:1293 [U] 3.66 2:1273 [G] 81.76
N:160 [PRO] 2:1294 [C] 3.41 2:1272 [G] 81.76

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 6AZ3_N_2 N: 60s ribosomal protein l10, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3S5H5C4 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_N_2 6S0Z_K_A 0.77 0.78 2.44 0.13 Ribosomal protein L10e compare
6AZ3_N_2 7RYG_L_A 0.76 0.78 2.39 0.16 Ribosomal protein L10e compare
6AZ3_N_2 7K00_l_a 0.72 0.79 2.53 0.13 Ribosomal protein L10e compare
6AZ3_N_2 7N1P_LP_23 0.76 0.8 2.11 0.16 Ribosomal protein L10e compare
6AZ3_N_2 7O7Y_BI_B5 0.88 0.92 1.34 0.77 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
6AZ3_N_2 7PJS_M_A 0.75 0.8 2.19 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 6AZ3_N_2 0.77 0.79 2.36 0.16 Ribosomal protein L10e compare
4YBB_DN_DA 6AZ3_N_2 0.74 0.8 2.18 0.16 Ribosomal protein L10e compare
1VQ8_H_0 6AZ3_N_2 0.89 0.81 1.6 0.39 Ribosomal protein L10e compare
1YHQ_H_0 6AZ3_N_2 0.87 0.81 1.64 0.35 Ribosomal protein L10e compare
1JJ2_H_0 6AZ3_N_2 0.88 0.81 1.64 0.39 Ribosomal protein L10e compare