RNAprotDB

All interfaces > All interologs > Interface groups > group138 > 7N1P_LP_23

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7N1P_LP
7N1P_23
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
LP:3 [GLN] 23:871 [U] 4.34 13.3
LP:4 [PRO] 23:870 [U] 3.69 23:907 [G] 84.6
LP:4 [PRO] 23:871 [U] 3.41 84.6
LP:5 [LYS] 23:870 [U] 4.04 23:907 [G] 68.5
LP:5 [LYS] 23:871 [U] 2.74 68.5
LP:5 [LYS] 23:872 [U] 4.97 23:905 [A] 68.5
LP:6 [ARG] 23:869 [G] 3.73 23:908 [C] 62.8
LP:6 [ARG] 23:870 [U] 3.16 23:907 [G] 62.8
LP:6 [ARG] 23:871 [U] 4.64 62.8
LP:7 [THR] 23:869 [G] 4.56 23:908 [C] 54.4
LP:7 [THR] 23:870 [U] 4.88 23:907 [G] 54.4
LP:8 [LYS] 23:868 [U] 3.22 23:909 [A] base:SC 77.6
LP:8 [LYS] 23:869 [G] 3.89 23:908 [C] 77.6
LP:8 [LYS] 23:909 [A] 4.25 23:868 [U] 77.6
LP:8 [LYS] 23:911 [A] 4.95 77.6
LP:8 [LYS] 23:912 [C] 2.92 23:864 [G] 77.6
LP:9 [PHE] 23:911 [A] 3.25 base/AA stacks 51.8
LP:9 [PHE] 23:912 [C] 3.63 23:864 [G] 51.8
LP:9 [PHE] 23:2278 [A] 4.17 23:2262 [U] 51.8
LP:10 [ARG] 23:2278 [A] 3.03 23:2262 [U] 63.1
LP:11 [LYS] 23:910 [A] 3.18 88.5
LP:11 [LYS] 23:911 [A] 2.6 base:BB 88.5
LP:11 [LYS] 23:2277 [G] 3.79 23:2263 [C] 88.5
LP:11 [LYS] 23:2278 [A] 3.57 23:2262 [U] 88.5
LP:12 [MET] 23:910 [A] 3.66 0.3
LP:12 [MET] 23:911 [A] 4.25 0.3
LP:12 [MET] 23:955 [PSU] 3.94 23:962 [G] 0.3
LP:13 [HIS] 23:910 [A] 2.9 base:BB base/AA stacks 60.6
LP:13 [HIS] 23:954 [G] 3.08 23:963 [U] 60.6
LP:13 [HIS] 23:955 [PSU] 3.17 23:962 [G] 60.6
LP:13 [HIS] 23:2264 [C] 4.87 23:2276 [G] 60.6
LP:13 [HIS] 23:2265 [U] 3.72 23:2274 [A] sugar:SC 60.6
LP:13 [HIS] 23:2276 [G] 3.8 23:2264 [C] 60.6
LP:13 [HIS] 23:2277 [G] 4.98 23:2263 [C] 60.6
LP:14 [LYS] 23:954 [G] 3.52 23:963 [U] 80.9
LP:14 [LYS] 23:955 [PSU] 3.11 23:962 [G] 80.9
LP:14 [LYS] 23:956 [G] 2.96 23:960 [A] base:SC 80.9
LP:14 [LYS] 23:958 [U] 3.41 80.9
LP:15 [GLY] 23:953 [G] 4.8 23:964 [C] 36.0
LP:15 [GLY] 23:954 [G] 2.68 23:963 [U] 36.0
LP:15 [GLY] 23:958 [U] 4.53 36.0
LP:16 [ARG] 23:953 [G] 3.79 23:964 [C] 67.3
LP:16 [ARG] 23:954 [G] 2.7 23:963 [U] 67.3
LP:16 [ARG] 23:958 [U] 3.78 67.3
LP:17 [ASN] 23:958 [U] 4.01 3.3
LP:18 [ARG] 23:952 [G] 3.82 23:965 [C] 49.5
LP:18 [ARG] 23:953 [G] 2.56 23:964 [C] 49.5
LP:20 [LEU] 23:863 [A] 4.54 23:913 [U] 16.5
LP:22 [GLN] 23:863 [A] 4.09 23:913 [U] 32.9
LP:22 [GLN] 23:864 [G] 3.58 23:912 [C] 32.9
LP:22 [GLN] 23:907 [G] 3.68 23:870 [U] 32.9
LP:22 [GLN] 23:908 [C] 3.69 23:869 [G] 32.9
LP:23 [GLY] 23:906 [U] 4.08 46.1
LP:23 [GLY] 23:907 [G] 3.35 23:870 [U] 46.1
LP:27 [SER] 23:905 [A] 4.63 23:872 [U] 19.8
LP:27 [SER] 23:906 [U] 3.96 19.8
LP:28 [PHE] 23:872 [U] 4.35 23:905 [A] 36.1
LP:28 [PHE] 23:873 [C] 3.9 23:904 [G] 36.1
LP:28 [PHE] 23:905 [A] 3.65 23:872 [U] 36.1
LP:28 [PHE] 23:906 [U] 3.43 36.1
LP:40 [ARG] 23:958 [U] 3.42 base:SC base/AA stacks 22.3
LP:42 [THR] 23:2485 [G] 4.48 23:2465 [C] 85.0
LP:44 [ARG] 23:2483 [C] 4.86 23:2467 [C] 47.1
LP:44 [ARG] 23:2484 [G] 3.06 23:2466 [C] 47.1
LP:45 [GLN] 23:2484 [G] 3.31 23:2466 [C] 85.5
LP:45 [GLN] 23:2485 [G] 2.52 23:2465 [C] 85.5
LP:48 [ALA] 23:2483 [C] 3.85 23:2467 [C] 76.3
LP:48 [ALA] 23:2484 [G] 3.6 23:2466 [C] 76.3
LP:51 [ARG] 23:2483 [C] 4.1 23:2467 [C] 62.1
LP:55 [ARG] 23:2469 [A] 2.86 23:2481 [G] 80.1
LP:55 [ARG] 23:2470 [G] 2.74 23:2480 [C] 80.1
LP:62 [LYS] 23:873 [C] 3.27 23:904 [G] 54.9
LP:62 [LYS] 23:874 [G] 3.36 23:903 [C] 54.9
LP:64 [TRP] 23:872 [U] 4.55 23:905 [A] 35.7
LP:64 [TRP] 23:873 [C] 3.07 23:904 [G] sugar:SC 35.7
LP:65 [ILE] 23:872 [U] 3.98 23:905 [A] 66.8
LP:66 [ARG] 23:906 [U] 3.05 sugar:SC 73.9
LP:66 [ARG] 23:907 [G] 4.23 23:870 [U] 73.9
LP:68 [PHE] 23:870 [U] 4.89 23:907 [G] 53.5
LP:68 [PHE] 23:871 [U] 3.47 53.5
LP:68 [PHE] 23:872 [U] 4.4 23:905 [A] 53.5
LP:68 [PHE] 23:907 [G] 4.7 23:870 [U] 53.5
LP:70 [ASP] 23:870 [U] 4.56 23:907 [G] 63.5
LP:70 [ASP] 23:907 [G] 4.24 23:870 [U] 63.5
LP:70 [ASP] 23:908 [C] 3.06 23:869 [G] sugar:SC 63.5
LP:74 [THR] 23:956 [G] 3.92 23:960 [A] 95.6
LP:74 [THR] 23:957 [C] 3.57 95.6
LP:75 [GLU] 23:957 [C] 3.4 72.7
LP:76 [LYS] 23:956 [G] 3.73 23:960 [A] 93.4
LP:76 [LYS] 23:957 [C] 2.9 93.4
LP:78 [LEU] 23:2459 [A] 3.85 23:2493 [U] 53.3
LP:78 [LEU] 23:2460 [U] 3.48 23:2492 [U] 53.3
LP:78 [LEU] 23:2493 [U] 4.87 23:2459 [A] 53.3
LP:79 [ALA] 23:2493 [U] 4.71 23:2459 [A] 71.0
LP:79 [ALA] 23:2494 [G] 3.08 23:2457 [PSU] 71.0
LP:79 [ALA] 23:2495 [G] 4.79 23:2456 [C] 71.0
LP:80 [VAL] 23:2494 [G] 4.42 23:2457 [PSU] 69.8
LP:80 [VAL] 23:2495 [G] 3.93 23:2456 [C] 69.8
LP:81 [4D4] 23:2250 [G] 4.29 98.7
LP:81 [4D4] 23:2251 [OMG] 3.17 Dt:75 [C] base:SC 98.7
LP:81 [4D4] 23:2495 [G] 2.65 23:2456 [C] 98.7
LP:81 [4D4] 23:2496 [C] 3.27 23:2455 [G] 98.7
LP:82 [MET] 23:956 [G] 3.36 23:960 [A] 99.0
LP:82 [MET] 23:959 [A] 3.37 99.0
LP:82 [MET] 23:960 [A] 3.45 23:956 [G] 99.0
LP:82 [MET] 23:962 [G] 3.73 23:955 [PSU] 99.0
LP:82 [MET] 23:2250 [G] 3.49 99.0
LP:82 [MET] 23:2495 [G] 3.72 23:2456 [C] 99.0
LP:82 [MET] 23:2496 [C] 3.02 23:2455 [G] 99.0
LP:83 [GLY] 23:955 [PSU] 4.96 23:962 [G] 98.8
LP:83 [GLY] 23:2250 [G] 3.26 98.8
LP:83 [GLY] 23:2275 [C] 3.94 23:2255 [G] 98.8
LP:83 [GLY] 23:2276 [G] 3.31 23:2264 [C] 98.8
LP:84 [LYS] 23:2249 [U] 4.17 78.7
LP:84 [LYS] 23:2250 [G] 3.22 78.7
LP:84 [LYS] 23:2255 [G] 4.67 23:2275 [C] 78.7
LP:84 [LYS] 23:2275 [C] 3.19 23:2255 [G] sugar:BB 78.7
LP:84 [LYS] 23:2276 [G] 3.42 23:2264 [C] 78.7
LP:85 [GLY] 23:956 [G] 4.57 23:960 [A] 98.6
LP:85 [GLY] 23:2275 [C] 3.53 23:2255 [G] 98.6
LP:85 [GLY] 23:2276 [G] 2.87 23:2264 [C] 98.6
LP:85 [GLY] 23:2277 [G] 3.53 23:2263 [C] 98.6
LP:86 [LYS] 23:955 [PSU] 2.72 23:962 [G] 98.9
LP:86 [LYS] 23:956 [G] 2.74 23:960 [A] 98.9
LP:86 [LYS] 23:2276 [G] 3.37 23:2264 [C] 98.9
LP:86 [LYS] 23:2277 [G] 2.94 23:2263 [C] 98.9
LP:87 [GLY] 23:955 [PSU] 4.98 23:962 [G] 98.1
LP:87 [GLY] 23:956 [G] 2.96 23:960 [A] 98.1
LP:97 [GLN] 23:908 [C] 4.97 23:869 [G] 68.2
LP:100 [LYS] 23:907 [G] 2.74 23:870 [U] sugar:SC 66.7
LP:100 [LYS] 23:908 [C] 4.27 23:869 [G] 66.7
LP:119 [LEU] 23:2467 [C] 4.22 23:2483 [C] 3.0
LP:119 [LEU] 23:2468 [A] 3.6 23:2482 [A] 3.0
LP:119 [LEU] 23:2469 [A] 4.91 23:2481 [G] 3.0
LP:122 [ALA] 23:2466 [C] 4.71 23:2484 [G] 19.2
LP:122 [ALA] 23:2467 [C] 3.38 23:2483 [C] 19.2
LP:122 [ALA] 23:2484 [G] 3.16 23:2466 [C] base:BB 19.2
LP:122 [ALA] 23:2485 [G] 4.31 23:2465 [C] 19.2
LP:123 [LYS] 23:2467 [C] 2.62 23:2483 [C] base:SC 88.7
LP:123 [LYS] 23:2468 [A] 4.62 23:2482 [A] 88.7
LP:123 [LYS] 23:2482 [A] 3.96 23:2468 [A] 88.7
LP:123 [LYS] 23:2483 [C] 3.26 23:2467 [C] 88.7
LP:123 [LYS] 23:2484 [G] 2.58 23:2466 [C] sugar:BB 88.7
LP:123 [LYS] 23:2485 [G] 3.76 23:2465 [C] 88.7
LP:124 [LEU] 23:2484 [G] 4.78 23:2466 [C] 86.6
LP:124 [LEU] 23:2485 [G] 3.43 23:2465 [C] 86.6
LP:125 [PRO] 23:2485 [G] 3.15 23:2465 [C] 80.0
LP:125 [PRO] 23:2486 [C] 3.29 23:2464 [G] 80.0
LP:127 [LYS] 23:1029 [A] 3.95 23:1125 [G] 71.2
LP:127 [LYS] 23:1030 [C] 3.31 23:1124 [G] 71.2

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 7N1P_LP_23 LP: 50s ribosomal protein l16, Escherichia coli (strain k12) (natural) 23: 23s rRNA, Escherichia coli k-12 (natural) P0ADY7 Ribosomal protein L10e Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_N_2 7N1P_LP_23 0.76 0.8 2.11 0.16 Ribosomal protein L10e compare
4Y4O_1Q_1A 7N1P_LP_23 0.84 0.97 0.77 0.58 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
6S0Z_K_A 7N1P_LP_23 0.83 0.96 1.36 0.51 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
4YBB_DN_DA 7N1P_LP_23 0.98 0.99 0.58 1.0 Ribosomal protein L10e Bacterial large subunit ribosomal RNA compare
1VQ8_H_0 7N1P_LP_23 0.63 0.91 2.2 0.16 Ribosomal protein L10e compare
6AZ3_N_1 7N1P_LP_23 0.57 0.69 2.45 0.07 Ribosomal protein L10e compare
1YHQ_H_0 7N1P_LP_23 0.64 0.91 2.3 0.16 Ribosomal protein L10e compare
1JJ2_H_0 7N1P_LP_23 0.63 0.91 2.32 0.18 Ribosomal protein L10e compare