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All interfaces > All interologs > Interface groups > group138 > 7O7Y_BI_B5

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BI
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BI:3 [ARG] B5:4152 [U] 4.31 B5:4184 [U] 69.7
BI:3 [ARG] B5:4176 [G] 3.99 B5:4158 [C] 69.7
BI:3 [ARG] B5:4177 [PSU] 2.83 B5:4157 [G] 69.7
BI:4 [ARG] B5:1804 [G] 4.7 B5:1807 [A] 92.9
BI:4 [ARG] B5:1805 [U] 2.46 92.9
BI:4 [ARG] B5:4151 [G] 2.8 B5:4185 [U] sugar:SC, sugar:SC 92.9
BI:4 [ARG] B5:4152 [U] 3.77 B5:4184 [U] 92.9
BI:5 [PRO] B5:4151 [G] 4.47 B5:4185 [U] 74.7
BI:5 [PRO] B5:4152 [U] 3.58 B5:4184 [U] 74.7
BI:5 [PRO] B5:4178 [C] 4.77 B5:4156 [G] 74.7
BI:6 [ALA] B5:4177 [PSU] 3.51 B5:4157 [G] 60.0
BI:6 [ALA] B5:4178 [C] 3.29 B5:4156 [G] 60.0
BI:7 [ARG] B5:4150 [U] 4.53 58.6
BI:7 [ARG] B5:4151 [G] 2.37 B5:4185 [U] 58.6
BI:7 [ARG] B5:4178 [C] 3.49 B5:4156 [G] 58.6
BI:7 [ARG] B5:4179 [G] 3.22 B5:4155 [C] base:SC 58.6
BI:7 [ARG] B5:4180 [C] 3.86 B5:4154 [G] 58.6
BI:8 [CYS] B5:1805 [U] 3.6 sugar:BB 67.3
BI:8 [CYS] B5:1806 [A] 4.89 67.3
BI:8 [CYS] B5:4151 [G] 3.47 B5:4185 [U] 67.3
BI:9 [TYR] B5:1805 [U] 3.94 74.4
BI:10 [ARG] B5:4178 [C] 3.86 B5:4156 [G] 77.9
BI:10 [ARG] B5:4179 [G] 3.75 B5:4155 [C] 77.9
BI:13 [LYS] B5:1802 [U] 4.06 B5:1810 [A2M] 27.2
BI:13 [LYS] B5:1804 [G] 3.2 B5:1807 [A] 27.2
BI:13 [LYS] B5:1805 [U] 4.81 27.2
BI:13 [LYS] B5:1806 [A] 2.48 27.2
BI:13 [LYS] B5:1807 [A] 4.85 B5:1804 [G] 27.2
BI:14 [ASN] B5:1802 [U] 4.81 B5:1810 [A2M] 55.6
BI:14 [ASN] B5:1803 [G] 2.91 B5:1809 [C] 55.6
BI:14 [ASN] B5:1804 [G] 4.39 B5:1807 [A] 55.6
BI:15 [LYS] B5:1726 [A] 3.52 55.2
BI:15 [LYS] B5:1801 [PSU] 4.09 B5:1811 [G] 55.2
BI:15 [LYS] B5:1802 [U] 3.19 B5:1810 [A2M] 55.2
BI:15 [LYS] B5:3957 [C] 3.76 55.2
BI:15 [LYS] B5:3958 [A] 3.6 B5:3965 [A] 55.2
BI:16 [PRO] B5:1725 [A] 3.42 B5:1683 [PSU] 55.9
BI:16 [PRO] B5:1726 [A] 3.69 55.9
BI:17 [TYR] B5:1726 [A] 3.47 64.1
BI:17 [TYR] B5:1727 [A] 3.52 64.1
BI:17 [TYR] B5:3969 [C] 4.91 B5:3955 [G] 64.1
BI:18 [PRO] B5:1725 [A] 4.09 B5:1683 [PSU] 86.9
BI:19 [LYS] B5:1685 [A] 4.98 B5:1723 [U] 86.3
BI:20 [SER] B5:1727 [A] 4.99 59.3
BI:21 [ARG] B5:1728 [C] 4.16 B5:1678 [G] 64.0
BI:21 [ARG] B5:3970 [A] 4.8 B5:3954 [U] 64.0
BI:21 [ARG] B5:4020 [A] 4.64 B5:4080 [U] 64.0
BI:21 [ARG] B5:4021 [G] 4.56 B5:4079 [C] 64.0
BI:22 [PHE] B5:1727 [A] 3.36 base/AA stacks 76.6
BI:22 [PHE] B5:1728 [C] 3.31 B5:1678 [G] 76.6
BI:22 [PHE] B5:3970 [A] 3.41 B5:3954 [U] 76.6
BI:24 [ARG] B5:3970 [A] 4.48 B5:3954 [U] 62.7
BI:24 [ARG] B5:3971 [G] 2.78 B5:3953 [C] 62.7
BI:30 [LYS] B5:4175 [C] 3.17 B5:4159 [C] 76.3
BI:30 [LYS] B5:4176 [G] 3.07 B5:4158 [C] 76.3
BI:34 [PHE] B5:1687 [U] 3.99 B5:1721 [PSU] 65.0
BI:35 [ASP] B5:1687 [U] 2.39 B5:1721 [PSU] sugar:SC 37.0
BI:35 [ASP] B5:1688 [A] 3.44 B5:1720 [PSU] 37.0
BI:39 [LYS] B5:1688 [A] 3.92 B5:1720 [PSU] 0.8
BI:39 [LYS] B5:1689 [G] 3.21 B5:1719 [A] 0.8
BI:40 [LYS] B5:1689 [G] 3.65 B5:1719 [A] 13.6
BI:40 [LYS] B5:1690 [A] 3.82 B5:1718 [PSU] 13.6
BI:42 [LYS] B5:1690 [A] 3.41 B5:1718 [PSU] 30.7
BI:61 [SER] B5:4176 [G] 3.98 B5:4158 [C] 88.7
BI:61 [SER] B5:4177 [PSU] 2.46 B5:4157 [G] 88.7
BI:63 [GLU] B5:4175 [C] 4.89 B5:4159 [C] 75.8
BI:63 [GLU] B5:4176 [G] 3.24 B5:4158 [C] 75.8
BI:63 [GLU] B5:4177 [PSU] 4.85 B5:4157 [G] 75.8
BI:64 [ALA] B5:4176 [G] 3.45 B5:4158 [C] 93.2
BI:64 [ALA] B5:4177 [PSU] 3.74 B5:4157 [G] 93.2
BI:66 [GLU] B5:4175 [C] 4.85 B5:4159 [C] 98.6
BI:67 [ALA] B5:4175 [C] 3.42 B5:4159 [C] 91.7
BI:67 [ALA] B5:4176 [G] 3.52 B5:4158 [C] 91.7
BI:70 [ILE] B5:4175 [C] 4.79 B5:4159 [C] 60.5
BI:74 [LYS] B5:4161 [A] 2.78 B5:4173 [G] sugar:SC, sugar:SC 72.3
BI:74 [LYS] B5:4174 [A] 4.67 B5:4160 [A] 72.3
BI:86 [HIS] B5:1688 [A] 4.72 B5:1720 [PSU] 45.2
BI:88 [ARG] B5:1688 [A] 4.03 B5:1720 [PSU] 57.1
BI:88 [ARG] B5:1721 [PSU] 3.8 B5:1687 [U] 57.1
BI:88 [ARG] B5:1722 [C] 3.91 B5:1686 [U] 57.1
BI:89 [VAL] B5:1722 [C] 4.2 B5:1686 [U] 67.2
BI:90 [ARG] B5:1722 [C] 3.06 B5:1686 [U] 60.3
BI:90 [ARG] B5:1723 [U] 2.88 B5:1685 [A] 60.3
BI:91 [LEU] B5:1723 [U] 4.7 B5:1685 [A] 19.5
BI:91 [LEU] B5:1724 [C] 4.66 B5:1684 [G] 19.5
BI:92 [HIS] B5:1686 [U] 3.93 B5:1722 [C] 72.4
BI:92 [HIS] B5:1687 [U] 3.31 B5:1721 [PSU] 72.4
BI:92 [HIS] B5:1722 [C] 3.31 B5:1686 [U] base:SC 72.4
BI:92 [HIS] B5:1723 [U] 3.53 B5:1685 [A] 72.4
BI:94 [PHE] B5:1685 [A] 4.28 B5:1723 [U] 88.3
BI:94 [PHE] B5:1686 [U] 3.91 B5:1722 [C] 88.3
BI:94 [PHE] B5:1723 [U] 3.25 B5:1685 [A] 88.3
BI:94 [PHE] B5:1724 [C] 3.46 B5:1684 [G] 88.3
BI:98 [ARG] B5:1803 [G] 2.89 B5:1809 [C] 98.5
BI:98 [ARG] B5:1804 [G] 2.56 B5:1807 [A] 98.5
BI:98 [ARG] B5:1805 [U] 3.54 98.5
BI:99 [ILE] B5:1805 [U] 3.54 96.2
BI:100 [ASN] B5:1804 [G] 3.53 B5:1807 [A] 86.9
BI:100 [ASN] B5:1805 [U] 2.82 86.9
BI:102 [MET] B5:4151 [G] 4.81 B5:4185 [U] 78.3
BI:102 [MET] B5:4186 [G] 4.34 B5:4149 [PSU] 78.3
BI:102 [MET] B5:4187 [A] 4.26 B5:4148 [C] 78.3
BI:103 [LEU] B5:4151 [G] 4.83 B5:4185 [U] 82.3
BI:103 [LEU] B5:4185 [U] 4.73 B5:4151 [G] 82.3
BI:103 [LEU] B5:4186 [G] 4.74 B5:4149 [PSU] 82.3
BI:104 [SER] B5:4151 [G] 4.75 B5:4185 [U] 72.7
BI:104 [SER] B5:4152 [U] 3.51 B5:4184 [U] 72.7
BI:104 [SER] B5:4185 [U] 4.51 B5:4151 [G] 72.7
BI:105 [CYS] B5:4185 [U] 3.21 B5:4151 [G] 73.3
BI:105 [CYS] B5:4186 [G] 3.85 B5:4149 [PSU] 73.3
BI:106 [ALA] B5:4185 [U] 3.78 B5:4151 [G] 98.8
BI:106 [ALA] B5:4186 [G] 3.77 B5:4149 [PSU] 98.8
BI:107 [GLY] B5:4185 [U] 4.21 B5:4151 [G] 89.9
BI:107 [GLY] B5:4186 [G] 2.81 B5:4149 [PSU] 89.9
BI:108 [ALA] B5:4185 [U] 4.88 B5:4151 [G] 98.9
BI:108 [ALA] B5:4186 [G] 3.51 B5:4149 [PSU] 98.9
BI:108 [ALA] B5:4187 [A] 4.99 B5:4148 [C] 98.9
BI:109 [ASP] B5:4143 [A] 4.6 B5:3639 [G] 98.6
BI:109 [ASP] B5:4186 [G] 4.47 B5:4149 [PSU] 98.6
BI:109 [ASP] B5:4187 [A] 2.99 B5:4148 [C] 98.6
BI:110 [ARG] B5:4294 [A] 3.12 base/AA stacks 98.6
BI:112 [GLN] B5:4186 [G] 2.8 B5:4149 [PSU] 80.3
BI:112 [GLN] B5:4187 [A] 3.03 B5:4148 [C] 80.3
BI:113 [THR] B5:3941 [G] 4.78 68.8
BI:113 [THR] B5:3942 [OMG] 4.44 AT:75 [C] 68.8
BI:113 [THR] B5:4188 [PSU] 4.47 B5:4147 [G] 68.8
BI:114 [GLY] B5:4187 [A] 3.96 B5:4148 [C] 98.7
BI:114 [GLY] B5:4188 [PSU] 3.67 B5:4147 [G] 98.7
BI:115 [MET] B5:1803 [G] 3.54 B5:1809 [C] 99.0
BI:115 [MET] B5:1804 [G] 3.74 B5:1807 [A] 99.0
BI:115 [MET] B5:1806 [A] 3.56 99.0
BI:115 [MET] B5:1807 [A] 3.53 B5:1804 [G] 99.0
BI:115 [MET] B5:1809 [C] 4.98 B5:1803 [G] 99.0
BI:115 [MET] B5:3941 [G] 3.25 99.0
BI:115 [MET] B5:3968 [G] 4.67 B5:3956 [U] 99.0
BI:115 [MET] B5:4187 [A] 3.44 B5:4148 [C] 99.0
BI:115 [MET] B5:4188 [PSU] 2.91 B5:4147 [G] 99.0
BI:116 [ARG] B5:3940 [U] 3.02 sugar:SC 78.0
BI:116 [ARG] B5:3941 [G] 2.86 78.0
BI:116 [ARG] B5:3943 [G] 4.68 AT:74 [C] 78.0
BI:116 [ARG] B5:3945 [C] 3.12 base:SC 78.0
BI:116 [ARG] B5:3946 [G] 3.46 B5:3967 [C] base/AA stacks 78.0
BI:116 [ARG] B5:3967 [C] 3.37 B5:3946 [G] base/AA stacks 78.0
BI:116 [ARG] B5:3968 [G] 4.97 B5:3956 [U] 78.0
BI:116 [ARG] B5:4188 [PSU] 4.87 B5:4147 [G] 78.0
BI:117 [GLY] B5:3941 [G] 4.22 46.2
BI:117 [GLY] B5:3967 [C] 3.67 B5:3946 [G] sugar:BB 46.2
BI:117 [GLY] B5:3968 [G] 3.51 B5:3956 [U] 46.2
BI:118 [ALA] B5:1803 [G] 3.63 B5:1809 [C] 79.6
BI:118 [ALA] B5:1804 [G] 3.11 B5:1807 [A] 79.6
BI:118 [ALA] B5:3968 [G] 3.72 B5:3956 [U] 79.6
BI:119 [PHE] B5:1726 [A] 4.75 78.9
BI:119 [PHE] B5:1803 [G] 3.57 B5:1809 [C] 78.9
BI:119 [PHE] B5:1804 [G] 3.62 B5:1807 [A] 78.9
BI:119 [PHE] B5:3968 [G] 3.81 B5:3956 [U] 78.9
BI:119 [PHE] B5:3969 [C] 3.42 B5:3955 [G] 78.9
BI:119 [PHE] B5:3970 [A] 4.97 B5:3954 [U] 78.9
BI:120 [GLY] B5:1803 [G] 4.31 B5:1809 [C] 97.9
BI:120 [GLY] B5:1804 [G] 2.75 B5:1807 [A] 97.9
BI:128 [ARG] B5:1724 [C] 4.36 B5:1684 [G] 74.9
BI:133 [GLN] B5:1723 [U] 3.7 B5:1685 [A] 59.0
BI:133 [GLN] B5:1724 [C] 2.54 B5:1684 [G] 59.0
BI:153 [ARG] B5:1884 [G] 4.71 B5:1976 [C] 50.7
BI:153 [ARG] B5:4160 [A] 4.71 B5:4174 [A] 50.7
BI:154 [ARG] B5:4159 [C] 4.13 B5:4175 [C] 65.4
BI:154 [ARG] B5:4160 [A] 4.52 B5:4174 [A] 65.4
BI:154 [ARG] B5:4161 [A] 3.45 B5:4173 [G] 65.4
BI:157 [PHE] B5:1883 [A] 3.77 B5:1977 [U] 22.9
BI:157 [PHE] B5:1884 [G] 4.1 B5:1976 [C] 22.9
BI:157 [PHE] B5:4158 [C] 3.92 B5:4176 [G] 22.9
BI:157 [PHE] B5:4159 [C] 3.42 B5:4175 [C] 22.9
BI:157 [PHE] B5:4176 [G] 2.92 B5:4158 [C] base:BB 22.9
BI:157 [PHE] B5:4177 [PSU] 4.41 B5:4157 [G] 22.9
BI:158 [LYS] B5:4159 [C] 2.93 B5:4175 [C] base:SC 98.7
BI:158 [LYS] B5:4174 [A] 3.83 B5:4160 [A] 98.7
BI:158 [LYS] B5:4175 [C] 2.68 B5:4159 [C] base:SC 98.7
BI:158 [LYS] B5:4176 [G] 2.51 B5:4158 [C] sugar:BB 98.7
BI:158 [LYS] B5:4177 [PSU] 3.6 B5:4157 [G] 98.7
BI:159 [PHE] B5:4176 [G] 4.58 B5:4158 [C] 66.3
BI:159 [PHE] B5:4177 [PSU] 4.32 B5:4157 [G] 66.3
BI:160 [PRO] B5:4177 [PSU] 3.39 B5:4157 [G] 82.6
BI:160 [PRO] B5:4178 [C] 3.3 B5:4156 [G] 82.6
BI:161 [GLY] B5:1883 [A] 4.81 B5:1977 [U] 38.0
BI:162 [ARG] B5:1972 [A] 3.51 B5:1889 [U] 36.0
BI:175 [LYS] B5:1680 [G] 3.43 59.5
BI:175 [LYS] B5:1721 [PSU] 4.21 B5:1687 [U] 59.5
BI:193 [ASP] B5:1689 [G] 2.9 B5:1719 [A] base:SC 50.8
BI:193 [ASP] B5:1690 [A] 2.76 B5:1718 [PSU] sugar:SC 50.8
BI:193 [ASP] B5:1691 [G] 4.9 B5:1717 [C] 50.8
BI:193 [ASP] B5:1719 [A] 3.55 B5:1689 [G] 50.8
BI:193 [ASP] B5:1720 [PSU] 4.36 B5:1688 [A] 50.8
BI:194 [GLY] B5:1689 [G] 3.43 B5:1719 [A] 79.5
BI:194 [GLY] B5:1690 [A] 3.65 B5:1718 [PSU] 79.5
BI:195 [CYS] B5:1689 [G] 3.02 B5:1719 [A] sugar:BB 43.7
BI:197 [VAL] B5:1720 [PSU] 3.84 B5:1688 [A] 62.2
BI:198 [LYS] B5:1719 [A] 3.11 B5:1689 [G] sugar:SC 60.8
BI:198 [LYS] B5:1720 [PSU] 4.13 B5:1688 [A] 60.8
BI:199 [TYR] B5:1680 [G] 5.0 14.2
BI:210 [ARG] B5:1070 [U] 4.7 53.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group138 7O7Y_BI_B5 BI: 60s ribosomal protein l10, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) B7NZQ2 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_N_2 7O7Y_BI_B5 0.88 0.92 1.34 0.77 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
4Y4O_1Q_1A 7O7Y_BI_B5 0.68 0.89 2.42 0.12 Ribosomal protein L10e compare
6S0Z_K_A 7O7Y_BI_B5 0.71 0.89 2.81 0.11 Ribosomal protein L10e compare
4YBB_DN_DA 7O7Y_BI_B5 0.72 0.88 2.4 0.14 Ribosomal protein L10e compare
1VQ8_H_0 7O7Y_BI_B5 0.79 0.94 1.27 0.35 Ribosomal protein L10e compare
6AZ3_N_1 7O7Y_BI_B5 0.83 0.92 1.32 0.71 Ribosomal protein L10e Eukaryotic large subunit ribosomal RNA compare
1YHQ_H_0 7O7Y_BI_B5 0.79 0.94 1.35 0.36 Ribosomal protein L10e compare
1JJ2_H_0 7O7Y_BI_B5 0.78 0.94 1.36 0.39 Ribosomal protein L10e compare