Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7OF0_N
|
7OF0_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| N:61 [LYS] | A:2109 [A] | 3.74 | 51.23 | |||
| N:62 [VAL] | A:2109 [A] | 2.97 | 23.76 | |||
| N:63 [ARG] | A:2109 [A] | 3.5 | base/AA stacks | 21.31 | ||
| N:64 [ARG] | A:2109 [A] | 4.34 | 74.62 | |||
| N:71 [ASP] | A:2109 [A] | 4.12 | 57.71 | |||
| N:73 [ARG] | A:2104 [A] | 4.71 | A:2117 [U] | 94.04 | ||
| N:73 [ARG] | A:2105 [G] | 3.6 | A:2116 [C] | 94.04 | ||
| N:95 [GLY] | A:2111 [C] | 4.92 | 94.26 | |||
| N:96 [TYR] | A:2111 [C] | 3.56 | 48.65 | |||
| N:98 [HIS] | A:2946 [A] | 4.03 | A:2978 [U] | 54.43 | ||
| N:100 [GLY] | A:2970 [C] | 3.95 | A:2954 [C] | 64.89 | ||
| N:100 [GLY] | A:2971 [A] | 4.8 | A:2953 [U] | 64.89 | ||
| N:101 [HIS] | A:2971 [A] | 2.75 | A:2953 [U] | 94.07 | ||
| N:101 [HIS] | A:2972 [A] | 3.02 | A:2952 [U] | 94.07 | ||
| N:104 [MET] | A:2969 [A] | 4.6 | A:2955 [U] | 72.65 | ||
| N:104 [MET] | A:2970 [C] | 3.08 | A:2954 [C] | 72.65 | ||
| N:104 [MET] | A:2971 [A] | 4.78 | A:2953 [U] | 72.65 | ||
| N:107 [LEU] | A:2956 [A] | 4.7 | A:2968 [A] | 31.18 | ||
| N:111 [ARG] | A:2955 [U] | 4.74 | A:2969 [A] | 80.79 | ||
| N:111 [ARG] | A:2956 [A] | 3.16 | A:2968 [A] | 80.79 | ||
| N:128 [PHE] | A:2109 [A] | 3.8 | 62.59 | |||
| N:129 [LYS] | A:2109 [A] | 3.2 | sugar:SC | 82.44 | ||
| N:129 [LYS] | A:2110 [A] | 4.78 | 82.44 | |||
| N:129 [LYS] | A:2111 [C] | 4.31 | 82.44 | |||
| N:130 [PRO] | A:2109 [A] | 3.13 | sugar:BB | 76.33 | ||
| N:130 [PRO] | A:2110 [A] | 4.47 | 76.33 | |||
| N:131 [ILE] | A:2110 [A] | 4.9 | 49.87 | |||
| N:131 [ILE] | A:2946 [A] | 4.41 | A:2978 [U] | 49.87 | ||
| N:149 [HIS] | A:2947 [U] | 4.38 | A:2977 [G] | 81.59 | ||
| N:178 [GLN] | A:2954 [C] | 3.88 | A:2970 [C] | 9.32 | ||
| N:181 [HIS] | A:2972 [A] | 3.86 | A:2952 [U] | sugar:BB | 0.19 | |
| N:182 [LYS] | A:2954 [C] | 3.05 | A:2970 [C] | 55.46 | ||
| N:182 [LYS] | A:2969 [A] | 4.93 | A:2955 [U] | 55.46 | ||
| N:182 [LYS] | A:2970 [C] | 2.96 | A:2954 [C] | base:SC | 55.46 | |
| N:182 [LYS] | A:2971 [A] | 2.73 | A:2953 [U] | sugar:BB | 55.46 | |
| N:182 [LYS] | A:2972 [A] | 3.26 | A:2952 [U] | 55.46 | ||
| N:183 [LEU] | A:2971 [A] | 4.65 | A:2953 [U] | 76.95 | ||
| N:183 [LEU] | A:2972 [A] | 3.98 | A:2952 [U] | 76.95 | ||
| N:184 [PRO] | A:2972 [A] | 3.64 | A:2952 [U] | 96.85 | ||
| N:184 [PRO] | A:2973 [U] | 4.32 | A:2951 [A] | 96.85 | ||
| N:227 [ARG] | A:2073 [A] | 3.01 | sugar:SC | 52.09 | ||
| N:227 [ARG] | A:2074 [A] | 3.43 | 52.09 | |||
| N:228 [LYS] | A:2102 [A] | 3.22 | A:2119 [U] | sugar:BB | 34.4 | |
| N:228 [LYS] | A:2120 [G] | 4.1 | A:2101 [C] | 34.4 | ||
| N:228 [LYS] | A:2121 [G] | 3.69 | A:2100 [C] | 34.4 | ||
| N:229 [VAL] | A:2102 [A] | 3.08 | A:2119 [U] | sugar:BB | 26.03 | |
| N:229 [VAL] | A:2103 [A] | 3.9 | A:2118 [U] | 26.03 | ||
| N:230 [LEU] | A:2102 [A] | 4.44 | A:2119 [U] | 51.56 | ||
| N:230 [LEU] | A:2103 [A] | 3.82 | A:2118 [U] | 51.56 | ||
| N:231 [SER] | A:2103 [A] | 2.97 | A:2118 [U] | 83.49 | ||
| N:231 [SER] | A:2104 [A] | 3.42 | A:2117 [U] | 83.49 | ||
| N:232 [PRO] | A:2072 [A] | 5.0 | 46.45 | |||
| N:232 [PRO] | A:2073 [A] | 3.73 | 46.45 | |||
| N:232 [PRO] | A:2103 [A] | 3.26 | A:2118 [U] | 46.45 | ||
| N:232 [PRO] | A:2104 [A] | 3.67 | A:2117 [U] | 46.45 | ||
| N:233 [TYR] | A:2104 [A] | 3.16 | A:2117 [U] | 42.46 | ||
| N:233 [TYR] | A:2105 [G] | 2.33 | A:2116 [C] | 42.46 | ||
| N:233 [TYR] | A:2831 [G] | 3.81 | base:SC | 42.46 | ||
| N:242 [TRP] | A:2103 [A] | 3.95 | A:2118 [U] | 25.94 | ||
| N:244 [LYS] | A:2111 [C] | 3.52 | 83.77 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group138 | 7OF0_N_A | N: 39s ribosomal protein l16, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) | Q9NX20 | Ribosomal protein L10e | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1Q_1A | 7OF0_N_A | 0.56 | 0.93 | 2.96 | 0.15 | Ribosomal protein L10e | Bacterial large subunit ribosomal RNA | compare |
| 6S0Z_K_A | 7OF0_N_A | 0.67 | 0.92 | 3.4 | 0.15 | Ribosomal protein L10e | Bacterial large subunit ribosomal RNA | compare |
| 4YBB_DN_DA | 7OF0_N_A | 0.57 | 0.92 | 3.28 | 0.15 | Ribosomal protein L10e | Bacterial large subunit ribosomal RNA | compare |
| 7OF0_N_A | 7PJS_M_A | 0.63 | 0.92 | 3.28 | 0.15 | Ribosomal protein L10e | Bacterial large subunit ribosomal RNA | compare |