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All interfaces > All interologs > Interface groups > group139 > 1JJ2_F_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1JJ2_F
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
F:30 [LYS] 0:246 [G] 4.28 54.44
F:31 [LYS] 0:247 [A] 4.42 0:264 [G] 65.21
F:31 [LYS] 0:262 [A] 3.25 65.21
F:31 [LYS] 0:264 [G] 3.46 0:247 [A] base:BB 65.21
F:32 [GLY] 0:262 [A] 3.54 99.0
F:32 [GLY] 0:263 [U] 3.62 99.0
F:32 [GLY] 0:264 [G] 3.34 0:247 [A] 99.0
F:33 [THR] 0:262 [A] 4.14 51.98
F:33 [THR] 0:263 [U] 2.78 51.98
F:33 [THR] 0:264 [G] 3.86 0:247 [A] 51.98
F:34 [ASN] 0:242 [A] 5.0 0:269 [G] 84.92
F:34 [ASN] 0:243 [A] 3.01 84.92
F:34 [ASN] 0:246 [G] 3.0 base:SC 84.92
F:34 [ASN] 0:264 [G] 3.32 0:247 [A] base:BB 84.92
F:35 [GLU] 0:246 [G] 2.77 sugar:SC base/AA stacks 87.21
F:35 [GLU] 0:262 [A] 4.49 87.21
F:35 [GLU] 0:264 [G] 2.72 0:247 [A] base:BB, base:SC, base:SC 87.21
F:38 [LYS] 0:243 [A] 3.36 85.88
F:38 [LYS] 0:244 [C] 2.82 0:267 [G] 85.88
F:38 [LYS] 0:246 [G] 4.79 85.88
F:42 [ARG] 0:244 [C] 2.98 0:267 [G] 67.6
F:42 [ARG] 0:245 [C] 2.66 0:266 [G] 67.6
F:53 [ASP] 0:263 [U] 3.99 97.51
F:54 [VAL] 0:263 [U] 3.27 80.66
F:55 [GLN] 0:263 [U] 2.84 base:BB, base:BB 56.39
F:56 [PRO] 0:263 [U] 3.61 70.55
F:59 [ILE] 0:263 [U] 2.93 75.0
F:80 [GLN] 0:263 [U] 2.86 base:SC base/AA stacks 73.55
F:89 [LEU] 0:262 [A] 3.33 80.56
F:90 [GLU] 0:261 [A] 3.63 base:SC 43.99
F:91 [VAL] 0:261 [A] 3.34 87.0
F:91 [VAL] 0:262 [A] 3.13 87.0
F:92 [GLY] 0:262 [A] 3.24 sugar:BB 34.82
F:92 [GLY] 0:263 [U] 4.0 34.82
F:93 [SER] 0:262 [A] 3.3 sugar:SC 72.44
F:93 [SER] 0:263 [U] 3.26 72.44
F:94 [ALA] 0:262 [A] 4.66 82.07
F:94 [ALA] 0:263 [U] 2.66 82.07
F:95 [ALA] 0:263 [U] 4.04 69.5

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 1JJ2_F_0 F: Ribosomal protein l7ae, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P12743 L30e-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
1JJ2_F_0 3HAX_D_E 0.97 0.8 0.65 0.56 L30e-like compare
1JJ2_F_0 2HVY_D_E 0.95 0.79 0.59 0.56 L30e-like compare
1JJ2_F_0 6Q8U_C_A,B 0.89 0.85 0.61 0.44 L30e-like compare
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 7O7Y_BG_B5,B8 0.58 0.94 2.25 0.19 L30e-like compare
1JJ2_F_0 1YHQ_F_0 0.99 1.0 0.16 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 4BW0_B_A 0.89 0.94 0.48 0.44 L30e-like compare
1JJ2_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1JJ2_F_0 3LWR_C_D 0.88 0.8 0.7 0.6 L30e-like compare
1JJ2_F_0 6AZ3_G_1,7 0.72 0.68 2.27 0.19 L30e-like compare