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All interfaces > All interologs > Interface groups > group139 > 1JJ2_F_0 vs 1VQ8_F_0

Interface analysis


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Common contacts -

1JJ2_F
1JJ2_0
1VQ8_F
1VQ8_0
Conserved?
F:55 [GLN] 0:263 [U] F:55 [GLN] 0:263 [U] ✔
F:56 [PRO] 0:263 [U] F:56 [PRO] 0:263 [U] ✔
F:90 [GLU] 0:261 [A] F:90 [GLU] 0:261 [A] ✔
F:53 [ASP] 0:263 [U] F:53 [ASP] 0:263 [U] ✔
F:31 [LYS] 0:247 [A] F:31 [LYS] 0:247 [A] ✔
F:31 [LYS] 0:262 [A] F:31 [LYS] 0:262 [A] ✔
F:31 [LYS] 0:264 [G] F:31 [LYS] 0:264 [G] ✔
F:92 [GLY] 0:262 [A] F:92 [GLY] 0:262 [A] ✔
F:92 [GLY] 0:263 [U] F:92 [GLY] 0:263 [U] ✔
F:59 [ILE] 0:263 [U] F:59 [ILE] 0:263 [U] ✔
F:35 [GLU] 0:246 [G] F:35 [GLU] 0:246 [G] ✔
F:35 [GLU] 0:262 [A] F:35 [GLU] 0:262 [A] ✔
F:35 [GLU] 0:264 [G] F:35 [GLU] 0:264 [G] ✔
F:94 [ALA] 0:262 [A] F:94 [ALA] 0:262 [A] ✔
F:94 [ALA] 0:263 [U] F:94 [ALA] 0:263 [U] ✔
F:32 [GLY] 0:262 [A] F:32 [GLY] 0:262 [A] ✔
F:32 [GLY] 0:263 [U] F:32 [GLY] 0:263 [U] ✔
F:32 [GLY] 0:264 [G] F:32 [GLY] 0:264 [G] ✔
F:30 [LYS] 0:246 [G] F:30 [LYS] 0:246 [G] ✔
F:38 [LYS] 0:243 [A] F:38 [LYS] 0:243 [A] ✔
F:38 [LYS] 0:244 [C] F:38 [LYS] 0:244 [C] ✔
F:38 [LYS] 0:246 [G] F:38 [LYS] 0:246 [G] ✔
F:89 [LEU] 0:262 [A] F:89 [LEU] 0:262 [A] ✔
F:95 [ALA] 0:263 [U] F:95 [ALA] 0:263 [U] ✔
F:54 [VAL] 0:263 [U] F:54 [VAL] 0:263 [U] ✔
F:34 [ASN] 0:243 [A] F:34 [ASN] 0:243 [A] ✔
F:34 [ASN] 0:246 [G] F:34 [ASN] 0:246 [G] ✔
F:34 [ASN] 0:264 [G] F:34 [ASN] 0:264 [G] ✔
F:93 [SER] 0:262 [A] F:93 [SER] 0:262 [A] ✔
F:93 [SER] 0:263 [U] F:93 [SER] 0:263 [U] ✔
F:33 [THR] 0:262 [A] F:33 [THR] 0:262 [A] ✔
F:33 [THR] 0:263 [U] F:33 [THR] 0:263 [U] ✔
F:33 [THR] 0:264 [G] F:33 [THR] 0:264 [G] ✔
F:91 [VAL] 0:261 [A] F:91 [VAL] 0:261 [A] ✔
F:91 [VAL] 0:262 [A] F:91 [VAL] 0:262 [A] ✔
F:42 [ARG] 0:244 [C] F:42 [ARG] 0:244 [C] ✔
F:42 [ARG] 0:245 [C] F:42 [ARG] 0:245 [C] ✔
F:80 [GLN] 0:263 [U] F:80 [GLN] 0:263 [U] ✔
F:34 [ASN] 0:242 [A] F:34 [ASN] 0:242 [A] ❌ 1VQ8_F_0
F:31 [LYS] 0:246 [G] F:31 [LYS] 0:246 [G] ❌ 1JJ2_F_0
F:38 [LYS] 0:242 [A] F:38 [LYS] 0:242 [A] ❌ 1JJ2_F_0
F:42 [ARG] 0:243 [A] F:42 [ARG] 0:243 [A] ❌ 1JJ2_F_0

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like Archaeal large subunit ribosomal RNA 1.0 0.29 1.00 1.0 1.0 1.0 1.0 0.99 0.97 0.94 0.00


Other pairs involving 1JJ2_F_0 or 1VQ8_F_0

Total number of entries: 21

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
1JJ2_F_0 3HAX_D_E 0.97 0.8 0.65 0.56 L30e-like compare
1JJ2_F_0 2HVY_D_E 0.95 0.79 0.59 0.56 L30e-like compare
1JJ2_F_0 6Q8U_C_A,B 0.89 0.85 0.61 0.44 L30e-like compare
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 7O7Y_BG_B5,B8 0.58 0.94 2.25 0.19 L30e-like compare
1JJ2_F_0 1YHQ_F_0 0.99 1.0 0.16 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 4BW0_B_A 0.89 0.94 0.48 0.44 L30e-like compare
1JJ2_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1JJ2_F_0 3LWR_C_D 0.88 0.8 0.7 0.6 L30e-like compare
1JJ2_F_0 6AZ3_G_1,7 0.72 0.68 2.27 0.19 L30e-like compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare